genome.fa.s8.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  95  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30586206--30586385	40	4.5	40	91	2	283	27	25	23	23	2.00
30589037--30589260	40	5.6	40	82	10	246	24	27	22	25	2.00
30589037--30589261	79	2.8	78	82	7	274	24	27	22	25	2.00
30589037--30589261	119	1.9	120	83	8	298	24	27	22	25	2.00
30591096--30591135	20	2.0	20	85	9	55	45	17	5	32	1.70
30593703--30593828	27	4.7	27	80	11	114	37	11	19	30	1.88
30593703--30593843	54	2.6	52	82	6	140	39	12	19	29	1.88
30593724--30593831	27	4.0	27	81	4	119	37	12	19	30	1.89
30593757--30593843	27	3.2	27	80	6	104	41	12	19	26	1.87
30595300--30595510	40	5.3	39	88	3	237	28	27	20	23	1.99
30603858--30603898	19	2.2	19	95	0	73	51	0	14	34	1.43
30612138--30612267	47	2.8	47	86	6	183	21	15	27	35	1.94
30614292--30614341	22	2.3	22	89	0	73	12	0	44	44	1.41
30617144--30617272	46	2.8	46	78	7	136	39	20	17	21	1.92
30618491--30618572	41	2.0	41	95	0	146	36	9	4	48	1.58
30618589--30618625	17	2.2	17	100	0	74	35	27	10	27	1.90
30619847--30619898	25	2.1	25	96	0	95	42	21	0	36	1.53
30620583--30620708	63	2.0	63	92	0	207	23	21	13	41	1.89
30622409--30623390	490	2.0	491	96	0	1804	33	17	16	32	1.93
30626917--30626956	19	2.1	19	100	0	80	35	17	5	42	1.71
30630979--30631034	27	2.1	27	100	0	112	55	0	3	41	1.17
30634634--30634687	27	2.0	27	85	0	72	40	5	14	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30642578--30642765	40	4.7	40	88	3	290	25	27	22	24	2.00
30643653--30643677	13	1.9	13	100	0	50	72	8	4	16	1.24
30645126--30645373	123	2.0	123	96	0	451	25	22	14	37	1.92
30648306--30648385	27	3.0	27	88	0	106	40	22	20	17	1.92
30649384--30649777	110	3.6	110	85	2	479	31	23	18	27	1.97
30649371--30649777	220	1.9	220	83	3	541	30	23	18	27	1.97
30657574--30657629	28	2.0	28	89	0	85	17	26	3	51	1.62
30666129--30666256	23	5.5	23	79	7	107	28	20	17	32	1.96
30673710--30673829	23	5.2	23	69	13	77	25	18	20	36	1.94
30673718--30673831	24	4.9	23	73	9	97	25	19	19	35	1.95
30686042--30686126	43	2.0	43	84	13	113	28	30	17	23	1.97
30687233--30687318	43	2.0	43	81	0	100	22	22	29	26	1.99
30693148--30693257	44	2.5	44	85	7	136	25	23	1	49	1.60
30693688--30693792	27	3.9	27	77	1	95	30	23	16	29	1.96
30696964--30696989	11	2.4	11	100	0	52	38	26	0	34	1.57
30700297--30700397	29	3.5	29	81	4	116	29	15	29	24	1.96
30704041--30704263	40	5.6	40	93	0	374	27	21	28	22	1.99
30704041--30704290	120	2.1	120	90	0	385	26	20	28	24	1.99
30710138--30710331	47	4.1	47	90	0	289	32	10	29	26	1.90
30710167--30710238	22	3.1	22	64	24	58	33	13	29	23	1.93
30710212--30710287	23	3.2	25	62	24	63	28	13	34	23	1.92
30710301--30710435	48	2.8	48	97	0	252	34	7	27	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30710302--30710475	96	1.8	95	82	7	228	33	9	28	28	1.89
30710581--30710689	37	2.9	37	95	0	191	22	19	31	26	1.98
30711957--30712306	40	8.8	40	94	0	605	24	22	28	25	1.99
30716336--30716529	47	4.1	47	90	0	289	32	10	29	26	1.90
30716365--30716436	22	3.1	22	64	24	58	33	13	29	23	1.93
30716410--30716485	23	3.2	25	62	24	63	28	13	34	23	1.92
30716499--30716633	48	2.8	48	97	0	252	34	7	27	30	1.84
30716500--30716673	96	1.8	95	82	7	228	33	9	28	28	1.89
30716779--30716887	37	2.9	37	95	0	191	22	19	31	26	1.98
30718070--30718251	91	2.0	91	100	0	364	37	17	14	30	1.90
30719689--30719797	49	2.2	50	82	9	127	44	11	11	33	1.77
30726882--30726907	13	2.0	13	100	0	52	15	30	38	15	1.88
30743643--30743751	37	2.9	37	95	0	191	26	31	19	22	1.98
30743929--30744050	47	2.6	47	94	0	208	27	30	11	31	1.91
30747893--30748297	40	10.1	40	88	1	544	27	27	20	24	1.99
30749566--30749674	37	2.9	37	95	0	191	26	31	19	22	1.98
30749837--30749973	47	3.0	47	91	2	206	26	30	12	30	1.93
30756017--30756142	47	2.7	47	94	0	216	32	28	16	22	1.96
30757586--30757651	34	1.9	34	93	6	116	21	24	27	27	1.99
30757571--30757661	34	2.6	34	84	10	114	18	26	25	29	1.98
30769031--30769075	23	2.0	22	82	4	54	44	26	2	26	1.66
30771634--30771845	94	2.3	90	81	8	241	25	28	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30771634--30771845	46	4.6	45	76	16	177	25	28	16	28	1.97
30791656--30791695	20	2.0	20	95	0	71	22	5	27	45	1.73
30810806--30810840	15	2.3	15	95	0	61	25	14	11	48	1.77
30812760--30812970	46	4.6	46	77	8	171	22	27	20	28	1.99
30817012--30817225	40	5.4	39	86	6	254	25	27	22	24	2.00
30824767--30824983	40	5.5	40	87	3	280	25	28	23	23	2.00
30830398--30830595	39	5.1	39	89	0	288	24	28	24	22	1.99
30836175--30836333	39	4.1	39	90	0	246	24	30	23	21	1.99
30840915--30841014	37	2.7	37	88	0	146	26	33	17	24	1.96
30841158--30841582	48	8.9	48	96	0	760	30	28	6	34	1.82
30846888--30846934	18	2.7	18	93	3	78	51	27	12	8	1.69
30849381--30849564	40	4.6	40	82	6	196	23	20	27	28	1.99
30849381--30849561	80	2.3	81	83	9	221	23	20	27	27	1.99
30849462--30849611	40	3.8	38	80	10	131	25	22	28	24	1.99
30857225--30857408	40	4.6	40	82	6	196	23	20	27	28	1.99
30857225--30857405	80	2.3	81	83	9	221	23	20	27	27	1.99
30857306--30857455	40	3.8	38	80	10	131	25	22	28	24	1.99
30870218--30870324	40	2.7	40	84	5	119	25	27	21	26	1.99
30870264--30870444	80	2.3	80	83	9	219	28	27	20	23	1.99
30870261--30870444	40	4.6	40	80	9	189	28	26	20	23	1.99
30877852--30878076	49	4.5	49	80	4	245	29	26	18	26	1.98
30877856--30878082	100	2.3	98	83	4	267	29	26	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30881822--30881874	27	2.0	27	84	0	70	37	16	18	26	1.93
30881866--30881998	27	5.0	27	74	7	119	23	15	20	41	1.89
30881877--30881950	26	2.8	26	79	6	78	25	14	17	41	1.88
30882334--30882434	18	5.6	18	87	0	130	27	19	7	44	1.79
30886465--30886508	22	2.0	22	86	0	61	56	4	0	38	1.20
30892090--30892128	19	2.1	19	95	0	69	35	10	12	41	1.77
30897045--30897360	39	8.1	39	91	0	506	24	29	25	21	1.99
30899639--30899692	24	2.2	24	84	12	67	29	38	16	14	1.89
30900178--30900257	32	2.5	32	89	4	99	32	15	11	41	1.82
30906155--30906430	39	7.1	39	96	0	498	23	30	25	21	1.99
30909267--30909327	25	2.4	25	81	8	70	32	22	21	22	1.98
30909404--30909463	26	2.3	26	85	0	84	36	21	23	18	1.95
30911542--30911651	38	2.9	38	82	6	134	17	22	27	32	1.96
30911534--30911804	41	6.8	41	78	5	166	18	19	26	36	1.94
30911673--30911786	40	2.8	40	86	2	138	18	15	26	39	1.91
30917822--30917922	50	2.0	50	96	0	184	42	19	15	21	1.89
30926959--30927022	32	2.0	32	90	6	103	37	21	23	17	1.94
30930272--30930393	47	2.6	47	94	0	208	36	13	22	26	1.92
30930375--30930568	55	3.6	54	80	4	221	35	19	23	21	1.96
30937773--30938132	46	7.8	46	93	0	497	40	14	24	20	1.90
30948350--30948379	9	3.4	9	90	9	53	63	0	0	36	0.95
30948883--30948925	18	2.4	18	92	0	68	41	9	27	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30949945--30949985	20	2.0	21	90	9	68	29	0	39	31	1.57
30949977--30950072	44	2.1	46	86	3	133	34	5	28	32	1.79
30950234--30950268	18	2.0	17	88	5	52	54	0	0	45	0.99
30950192--30950264	27	2.7	27	76	8	76	52	2	0	45	1.15
30950375--30950408	16	2.2	16	89	5	52	55	0	0	44	0.99
30950153--30950420	143	1.9	146	92	6	467	46	3	2	47	1.34
30950494--30950528	18	2.0	17	88	5	52	60	0	0	40	0.97
30950360--30950579	120	1.9	117	94	2	386	49	6	2	42	1.41
30950569--30950615	17	2.9	16	78	18	53	46	2	6	44	1.40
30950588--30950621	17	2.0	17	94	0	59	50	0	5	44	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362