genome.fa.s8.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  135  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44805690--44806002	82	3.8	81	84	3	378	26	15	28	29	1.96
44805690--44805976	109	2.6	109	97	0	540	27	15	27	29	1.96
44805689--44806004	136	2.3	136	85	3	413	27	15	28	29	1.96
44811870--44811960	43	2.2	41	82	4	101	30	19	19	29	1.97
44819950--44820055	43	2.5	41	80	8	115	27	17	23	31	1.97
44823389--44823954	283	2.0	283	98	0	1096	35	11	14	38	1.83
44828057--44828090	18	1.9	18	94	5	61	44	11	14	29	1.81
44829007--44829039	14	2.4	14	95	5	59	27	0	0	72	0.85
44830079--44830140	30	2.1	30	100	0	124	25	16	22	35	1.94
44836259--44836313	28	2.0	28	92	0	92	30	27	16	25	1.96
44838456--44838623	46	3.6	45	74	12	162	29	28	19	22	1.98
44838457--44838627	93	1.8	93	89	0	270	29	28	19	21	1.98
44849748--44849794	23	2.0	23	83	0	58	23	31	8	36	1.85
44855423--44855539	29	4.1	29	89	4	166	29	29	14	26	1.95
44860788--44860956	47	3.6	47	76	11	132	23	29	19	27	1.98
44860693--44861002	94	3.3	93	74	9	258	23	29	18	28	1.98
44868274--44868443	94	1.8	93	83	6	227	24	28	18	28	1.98
44870246--44870307	30	2.1	30	90	0	97	29	16	22	32	1.95
44873153--44873426	40	6.9	40	95	0	469	22	27	23	26	1.99
44881248--44881506	38	6.9	39	84	11	344	22	28	22	27	1.99
44881256--44881506	77	3.4	76	90	6	374	22	27	22	27	1.99
44885189--44885411	104	2.2	104	92	2	369	31	31	19	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44889457--44889509	26	2.0	26	88	0	79	30	33	18	16	1.94
44889469--44889614	69	2.1	68	87	3	204	30	29	16	23	1.96
44889627--44889674	25	2.0	25	95	4	89	29	33	25	12	1.92
44889536--44889739	100	2.0	101	89	6	317	31	29	20	18	1.96
44890077--44890138	28	2.2	29	85	8	83	29	27	6	37	1.82
44896899--44897048	69	2.1	72	90	3	234	30	29	17	23	1.97
44896899--44897084	69	2.6	69	85	8	212	30	30	17	20	1.96
44896968--44897188	103	2.2	103	92	4	367	31	31	19	18	1.95
44897512--44897575	30	2.2	29	81	10	76	29	28	6	35	1.82
44897519--44897575	30	1.9	30	85	3	80	29	24	7	38	1.82
44904515--44904738	104	2.2	104	93	1	378	31	31	19	17	1.95
44905067--44905130	30	2.2	29	81	10	76	29	28	6	35	1.82
44905074--44905130	30	1.9	30	85	3	80	29	24	7	38	1.82
44908635--44908858	49	4.7	49	70	11	169	25	27	19	27	1.99
44908642--44908949	141	2.2	141	87	2	431	24	28	19	28	1.98
44914724--44914820	50	1.9	50	93	0	167	27	19	24	27	1.99
44916535--44916594	27	2.2	28	82	14	81	33	25	13	28	1.93
44916544--44916596	27	2.0	27	92	7	90	33	18	16	30	1.94
44919005--44919228	50	4.5	50	79	9	258	29	24	20	26	1.99
44919042--44919223	101	1.8	101	86	2	267	28	24	21	26	1.99
44926240--44926515	50	5.5	50	78	9	258	30	25	18	25	1.98
44926235--44926515	101	2.8	97	76	10	266	30	25	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44928180--44928212	14	2.3	15	89	5	50	21	0	15	63	1.30
44933700--44933870	93	1.8	93	88	0	261	29	26	21	22	1.99
44933694--44933879	46	4.0	47	69	18	122	30	26	19	22	1.98
44943142--44944543	469	3.0	469	96	1	2500	31	10	29	29	1.90
44954400--44954515	28	4.2	28	87	2	164	17	23	22	37	1.94
44965331--44965425	38	2.4	42	86	10	128	30	12	27	29	1.93
44973110--44973185	28	2.7	27	86	9	100	27	14	25	32	1.94
44983018--44983122	43	2.4	43	88	3	149	33	21	16	28	1.95
44983987--44984068	43	1.9	43	87	0	119	32	21	15	29	1.95
44985079--44985272	27	7.2	27	83	0	208	31	22	7	39	1.81
44985079--44985260	54	3.4	54	85	0	229	32	20	7	39	1.80
44985795--44985903	6	17.8	6	70	14	71	19	18	13	48	1.81
44985785--44985852	31	2.2	31	86	0	91	20	19	13	47	1.82
44985785--44985882	37	3.0	31	78	16	106	19	19	13	47	1.81
44985796--44985894	37	2.7	37	91	0	153	19	18	13	49	1.79
44987881--44987987	27	4.0	27	76	4	83	39	20	8	31	1.82
44987939--44988012	27	2.7	26	81	8	76	41	22	9	25	1.84
44988006--44988173	27	6.2	27	86	1	201	30	22	6	40	1.79
44988476--44988539	31	2.0	32	87	3	94	20	23	18	37	1.94
44988677--44988800	6	20.3	6	68	18	69	20	20	12	47	1.81
44988689--44988773	31	2.8	30	89	1	125	20	23	10	45	1.81
44990846--44990928	27	3.1	27	80	16	100	38	19	12	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44990796--44990926	54	2.4	54	78	7	131	37	20	9	32	1.86
44990920--44991110	27	7.1	27	87	0	238	32	20	4	41	1.73
44990893--44991110	81	2.7	81	82	1	186	33	21	5	39	1.76
44991415--44991476	31	2.0	31	83	3	79	20	22	20	35	1.96
44991646--44991759	6	18.7	6	67	15	56	21	18	12	48	1.80
44991648--44991743	37	2.6	37	83	3	113	21	19	10	47	1.79
44993361--44993451	6	14.8	6	74	13	78	19	17	13	49	1.79
44993361--44993451	37	2.5	37	87	0	128	19	17	13	49	1.79
44995416--44995577	54	3.0	53	73	7	157	40	23	8	28	1.83
44995572--44995723	27	5.6	27	84	0	187	32	19	7	40	1.79
44995560--44995728	81	2.1	80	84	2	221	33	19	7	39	1.79
44996059--44996122	33	2.0	32	84	9	85	23	23	17	35	1.95
44996258--44996386	6	21.3	6	70	16	88	20	17	12	49	1.78
44998304--44998383	25	3.2	25	79	8	67	40	22	7	30	1.81
44998444--44998600	27	5.8	27	81	5	174	30	21	6	42	1.77
44998444--44998600	55	2.9	54	80	11	178	30	21	6	42	1.77
44998444--44998604	82	2.0	81	83	3	207	29	21	6	42	1.78
44999124--44999201	30	2.5	31	81	4	86	23	19	10	47	1.79
44999179--44999252	6	12.3	6	77	11	80	17	16	14	51	1.77
45001209--45001276	27	2.5	27	85	0	82	44	25	5	25	1.76
45001218--45001330	26	4.3	26	76	8	95	40	24	7	26	1.83
45001353--45001510	28	5.8	27	80	5	167	31	20	8	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45001353--45001514	82	2.0	81	83	6	202	30	20	8	40	1.82
45001377--45001507	53	2.4	54	84	3	156	30	19	8	41	1.81
45001845--45001909	34	2.0	32	82	11	78	23	23	16	36	1.94
45002104--45002178	6	12.3	6	74	20	59	17	16	14	52	1.76
45002105--45002131	13	2.1	13	100	0	54	14	14	14	55	1.70
45002091--45002151	19	3.2	18	77	11	59	18	19	13	49	1.79
45002118--45002178	23	2.6	25	80	15	67	16	16	14	52	1.75
45004152--45004223	28	2.5	28	80	12	76	43	23	8	25	1.81
45005091--45005158	19	3.6	19	69	21	54	19	16	14	50	1.79
45006418--45006506	27	3.3	27	78	12	85	41	20	10	28	1.84
45006361--45006505	54	2.7	53	78	5	148	41	21	8	28	1.83
45006485--45006641	27	5.8	27	85	0	197	31	20	7	40	1.81
45006485--45006645	81	2.0	81	87	0	232	31	20	8	40	1.81
45006973--45007036	33	2.0	32	84	9	85	23	23	17	35	1.95
45007175--45007252	30	2.5	31	81	4	86	23	19	10	47	1.79
45007230--45007304	6	12.3	6	75	13	73	17	16	14	52	1.76
45007197--45007295	37	2.7	36	87	1	126	19	19	12	49	1.79
45009338--45009416	27	3.0	27	73	17	83	37	18	12	30	1.89
45009287--45009416	54	2.4	53	80	3	127	38	20	10	30	1.86
45009411--45009604	27	7.2	27	85	2	237	28	21	7	42	1.80
45009411--45009604	81	2.4	81	89	0	280	28	21	7	42	1.80
45010108--45010229	6	19.8	6	70	14	79	20	18	12	49	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45010108--45010217	31	3.5	31	78	7	109	20	18	12	48	1.81
45010130--45010217	37	2.4	37	88	0	131	20	19	13	46	1.83
45010108--45010229	37	3.4	36	76	13	128	20	18	12	49	1.79
45012757--45012892	26	5.3	26	81	5	154	27	22	22	27	1.99
45012757--45012892	52	2.7	51	85	7	179	27	22	22	27	1.99
45012944--45012996	20	2.8	20	83	11	58	33	16	9	39	1.81
45018495--45018582	6	14.3	6	71	21	67	46	15	18	19	1.84
45018504--45018582	31	2.5	31	89	4	115	46	15	18	18	1.84
45019002--45019257	27	9.6	27	90	1	381	23	19	21	36	1.95
45019242--45019393	27	5.7	26	78	7	101	30	8	19	40	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362