genome.fa.s8.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  206  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69567613--69567792	56	3.2	56	82	4	231	29	16	28	25	1.97
69567697--69567800	28	3.7	28	78	7	104	29	20	26	23	1.98
69582362--69582398	18	2.1	18	94	0	65	45	0	24	29	1.53
69589000--69589177	52	3.5	50	81	7	198	24	30	15	29	1.95
69589000--69589177	51	3.5	50	83	7	207	24	30	15	29	1.95
69591094--69591129	18	2.0	18	100	0	72	33	16	22	27	1.95
69591635--69591704	36	1.9	36	100	0	140	48	17	4	30	1.66
69595397--69595544	52	2.9	51	88	4	210	28	28	13	29	1.94
69600498--69600548	27	2.0	25	88	7	75	13	17	21	47	1.82
69600819--69600925	29	3.8	29	76	6	94	27	27	14	31	1.94
69601141--69601179	16	2.4	16	91	0	60	15	20	15	48	1.81
69610574--69610685	27	4.1	27	82	11	115	16	21	23	39	1.92
69610574--69610685	54	2.1	54	84	3	145	16	21	23	39	1.92
69611997--69612121	67	1.9	65	80	6	144	28	28	24	18	1.98
69613215--69613367	43	3.6	42	78	11	168	30	26	19	23	1.98
69619031--69619073	18	2.4	18	88	0	59	46	18	16	18	1.84
69619364--69619432	27	2.6	27	83	0	84	44	18	15	20	1.86
69619388--69619486	27	3.7	27	73	10	94	43	17	12	27	1.84
69619504--69619682	27	6.6	27	82	0	223	18	16	24	40	1.90
69622263--69622434	43	4.0	43	78	3	166	23	18	25	33	1.96
69624394--69624474	41	2.0	41	85	7	112	25	13	30	29	1.94
69642193--69642258	34	2.0	33	85	8	89	27	19	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69642415--69642518	52	2.0	51	86	1	145	32	22	6	38	1.80
69645515--69645656	40	3.6	40	88	2	207	24	22	26	26	2.00
69648931--69649009	34	2.3	33	86	4	104	24	20	22	32	1.97
69649875--69649983	37	2.9	37	94	0	182	27	31	18	22	1.97
69650129--69650313	48	3.8	48	90	4	291	30	26	7	35	1.83
69650129--69650312	98	1.9	97	91	4	300	30	26	7	35	1.83
69650376--69650447	22	3.1	22	64	24	58	23	29	13	33	1.93
69650283--69650455	47	3.7	47	90	0	256	25	27	12	34	1.91
69650184--69650466	94	3.0	92	77	7	259	27	27	9	34	1.89
69654275--69654436	43	3.8	42	77	11	168	32	24	17	25	1.97
69654275--69654436	86	1.9	85	83	8	213	32	24	17	25	1.97
69664966--69665100	55	2.5	55	78	4	146	28	29	27	14	1.95
69669563--69669729	47	3.6	47	90	0	244	31	7	31	29	1.86
69671955--69672235	40	7.1	40	89	2	386	24	22	27	24	2.00
69672434--69672540	56	1.9	56	86	3	153	24	18	28	28	1.98
69672416--69672566	56	2.7	55	75	13	141	25	15	28	29	1.96
69677977--69678159	79	2.3	81	83	7	223	24	22	27	24	2.00
69677978--69678161	40	4.6	40	82	9	207	24	22	28	24	2.00
69678030--69678194	79	2.1	79	83	6	201	26	21	27	24	1.99
69686128--69686312	40	4.7	40	80	6	207	23	22	28	25	1.99
69686181--69686345	79	2.1	79	82	6	192	25	20	28	25	1.99
69690271--69690297	13	2.1	13	100	0	54	14	37	33	14	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69691103--69691132	9	3.4	9	90	9	53	30	10	0	60	1.30
69700643--69700836	47	4.1	47	87	0	271	32	11	28	26	1.91
69700672--69700743	22	3.1	22	64	24	58	34	13	27	23	1.93
69700806--69701038	48	4.8	48	91	4	387	35	7	26	30	1.84
69700806--69701057	98	2.6	95	86	5	339	34	7	26	31	1.84
69700808--69701078	146	1.9	140	84	9	366	34	8	27	29	1.86
69701205--69701296	45	2.0	46	89	2	141	23	16	32	27	1.96
69709440--69709507	28	2.4	28	80	4	75	25	25	19	30	1.98
69714949--69715060	29	3.9	29	85	6	131	27	29	14	28	1.95
69719546--69719774	49	4.6	49	77	3	233	30	26	17	26	1.97
69726230--69726405	46	3.8	46	79	12	216	20	21	29	28	1.98
69726227--69726398	93	1.8	93	96	0	317	20	21	29	27	1.98
69730594--69730656	30	2.1	30	96	0	117	19	9	30	41	1.83
69733816--69733991	46	3.8	46	79	12	216	20	21	29	28	1.98
69733813--69733984	93	1.8	93	96	0	317	20	21	29	27	1.98
69736789--69736925	50	2.7	50	86	0	166	31	25	16	26	1.97
69739587--69739812	49	4.6	49	71	7	159	31	25	17	24	1.97
69742764--69742902	51	2.8	51	84	2	183	31	25	17	24	1.97
69748029--69748074	20	2.3	21	82	14	62	30	17	23	28	1.97
69750726--69750781	25	2.2	25	80	6	58	28	19	19	32	1.97
69758177--69758228	28	1.9	26	84	7	68	53	3	17	25	1.60
69758737--69758841	41	2.5	42	92	3	176	26	14	28	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69758822--69758861	20	2.0	20	100	0	80	35	5	25	35	1.78
69758779--69758904	63	2.0	63	92	0	207	27	12	27	31	1.93
69758738--69758947	106	2.0	104	93	1	357	26	14	28	30	1.95
69758842--69759023	43	4.2	43	89	0	229	25	14	27	32	1.95
69758983--69759212	54	4.2	54	92	2	352	27	13	24	33	1.94
69761713--69761846	42	3.1	43	81	11	159	30	26	17	24	1.97
69761713--69761862	42	3.5	43	78	13	150	30	26	18	25	1.98
69764427--69764593	40	4.2	40	81	6	97	25	27	23	23	2.00
69764450--69764593	40	3.6	40	84	6	184	23	26	24	25	2.00
69772399--69772566	40	4.2	40	83	4	106	25	27	23	23	2.00
69772422--69772566	40	3.6	40	85	4	193	23	26	24	25	2.00
69776665--69776874	43	4.9	44	75	5	171	30	15	22	31	1.95
69784008--69784041	17	1.9	17	88	5	50	14	41	29	14	1.86
69785721--69785755	18	2.1	17	89	10	54	48	11	14	25	1.77
69787902--69787951	20	2.5	21	83	9	68	38	8	0	54	1.30
69795129--69795315	50	3.8	49	81	7	198	25	17	27	28	1.98
69798320--69798371	15	3.5	15	77	17	63	11	13	13	61	1.57
69798312--69798371	30	2.0	30	90	6	95	10	11	16	61	1.55
69803512--69803580	20	3.4	19	75	25	70	27	15	10	46	1.78
69803499--69803560	21	3.0	21	72	27	69	30	14	12	41	1.83
69803499--69803582	41	2.0	41	97	0	159	29	16	11	41	1.84
69805681--69805752	28	2.6	28	95	0	126	34	27	6	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69805892--69805980	28	3.2	27	80	7	99	21	21	23	33	1.97
69805892--69805964	27	2.6	28	82	6	96	21	24	23	30	1.99
69807089--69807123	10	3.4	10	84	7	52	28	8	8	54	1.60
69813430--69813522	28	3.3	28	92	0	150	33	25	8	32	1.86
69813628--69813717	27	3.2	28	78	7	103	21	22	23	33	1.97
69835664--69835699	18	2.0	18	100	0	72	27	5	27	38	1.79
69836071--69836185	29	4.0	29	76	5	117	29	13	30	26	1.94
69838292--69838317	12	2.2	12	100	0	52	23	19	7	50	1.73
69838308--69838379	34	2.1	34	89	5	110	26	22	20	30	1.98
69840161--69840216	27	2.0	28	82	3	69	28	17	26	26	1.98
69852770--69852810	19	2.2	18	91	4	64	0	19	0	80	0.71
69852770--69852810	10	4.2	10	81	12	50	0	19	0	80	0.71
69854196--69854270	20	3.8	20	87	6	102	37	8	18	36	1.80
69854213--69854270	11	5.6	11	74	15	61	37	8	18	34	1.82
69854320--69854508	26	7.3	26	86	4	242	28	21	22	28	1.99
69863544--69863602	30	2.0	30	86	0	82	28	20	6	44	1.77
69867161--69867206	21	2.3	20	78	14	51	30	6	17	45	1.73
69879041--69879078	19	2.0	19	85	10	51	44	15	0	39	1.47
69879504--69879638	55	2.5	55	91	0	216	32	25	14	26	1.95
69882288--69882461	47	3.7	47	79	6	183	23	28	20	27	1.99
69882145--69882447	47	6.4	47	70	13	167	24	28	19	27	1.99
69882145--69882450	94	3.2	91	75	11	278	23	28	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69888375--69888533	43	3.7	43	77	10	164	24	17	28	28	1.97
69904505--69904714	29	7.3	29	80	4	178	38	23	11	26	1.89
69904509--69904675	87	1.9	87	84	4	221	41	22	12	23	1.88
69905850--69905883	17	1.9	17	88	5	50	26	29	0	44	1.55
69906110--69906145	17	2.1	17	100	0	72	22	11	11	55	1.66
69912287--69912382	49	2.0	49	95	0	174	33	18	20	27	1.96
69922155--69922330	57	3.1	57	89	0	253	36	19	4	38	1.73
69929897--69929929	12	2.7	12	95	4	57	27	18	18	36	1.94
69934678--69934741	24	2.6	24	85	7	76	35	3	3	57	1.30
69952166--69952223	30	2.0	29	93	3	98	32	25	15	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362