Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  319  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106352368--106352463
40
2.4
40
83
0
120
30
9
23
36
1.87
106352573--106352645
36
2.0
36
97
0
137
28
10
28
31
1.91
106369992--106370127
68
2.0
68
97
0
254
38
14
23
23
1.92
106370384--106370691
46
6.7
46
92
0
438
40
14
23
21
1.90
106373424--106373512
29
3.1
29
65
18
76
50
10
6
32
1.62
106373397--106373512
58
2.0
58
96
0
214
50
10
6
32
1.63
106388719--106388765
19
2.3
20
76
20
53
38
4
17
40
1.69
106389071--106389138
28
2.3
30
87
12
97
39
1
5
52
1.34
106390560--106390598
18
2.2
18
85
0
51
30
15
20
33
1.94
106392158--106392195
14
2.7
14
87
0
58
42
10
15
31
1.81
106394566--106394843
18
15.1
18
74
10
168
38
15
11
34
1.83
106394642--106394843
72
2.8
71
81
5
228
38
15
11
34
1.84
106395062--106395095
6
5.5
6
86
6
50
44
17
20
17
1.87
106395060--106395095
12
2.8
13
91
4
56
41
19
22
16
1.90
106396749--106396799
24
2.1
24
100
0
102
45
7
19
27
1.78
106396831--106396875
19
2.4
18
86
13
65
0
33
0
66
0.92
106405390--106405427
20
1.9
20
88
0
58
23
36
26
13
1.91
106406165--106406221
30
1.9
30
96
0
105
31
15
7
45
1.73
106409323--106409355
13
2.6
13
90
4
50
39
0
12
48
1.40
106412069--106412104
13
2.8
13
100
0
72
52
30
16
0
1.44
106414766--106414825
6
9.7
6
79
13
68
15
1
0
83
0.73
106414764--106414824
11
5.5
11
75
14
63
16
1
0
81
0.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106414764--106414825
22
2.8
23
83
13
85
16
1
0
82
0.75
106414766--106414840
22
3.4
22
82
14
84
16
4
0
80
0.87
106415743--106415776
17
1.9
18
88
5
52
23
20
5
50
1.70
106417707--106417739
13
2.6
13
90
4
50
39
0
12
48
1.40
106421621--106421683
31
2.0
31
93
0
108
11
14
20
53
1.70
106434062--106434154
35
2.7
35
86
0
132
29
9
10
50
1.69
106444335--106444368
16
2.1
16
94
0
59
35
0
0
64
0.94
106454385--106454462
40
2.0
39
94
2
138
15
15
10
58
1.62
106456546--106456598
22
2.4
21
75
9
52
37
0
1
60
1.08
106462991--106463038
20
2.6
17
76
20
51
83
0
8
8
0.82
106462990--106463039
13
3.9
13
75
12
50
84
0
8
8
0.79
106463982--106465550
205
7.6
205
92
0
2406
31
18
21
29
1.97
106466986--106467043
11
5.2
11
76
12
55
41
0
1
56
1.09
106467121--106467176
24
2.4
23
78
3
67
30
3
1
64
1.21
106469811--106469848
20
1.9
20
88
0
58
52
5
7
34
1.53
106470261--106470321
31
2.0
31
93
0
104
40
11
11
36
1.77
106475742--106475879
50
2.8
49
82
2
161
30
15
21
32
1.94
106476045--106476143
37
2.7
36
82
1
126
30
18
25
26
1.98
106485847--106485873
13
2.1
13
100
0
54
14
33
37
14
1.88
106495596--106495669
36
2.1
36
100
0
148
24
5
32
37
1.78
106506176--106506495
159
2.0
159
100
0
640
39
22
3
34
1.70
106507065--106507121
25
2.3
26
87
9
91
43
17
19
19
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106507254--106507310
24
2.4
25
79
5
64
31
19
29
19
1.96
106514145--106514204
20
3.0
19
80
9
75
23
8
1
66
1.28
106514147--106514203
30
1.9
30
86
13
82
22
8
1
66
1.29
106514924--106514957
17
1.9
18
88
5
52
23
8
0
67
1.18
106520558--106520599
13
3.3
12
90
9
66
21
2
0
76
0.90
106522183--106522222
20
2.0
20
90
9
64
20
7
2
70
1.24
106528171--106528275
46
2.3
44
83
12
133
26
27
15
30
1.96
106533809--106533842
18
1.9
17
88
5
50
0
11
2
85
0.71
106534818--106534884
5
12.6
5
76
16
55
76
4
2
16
1.08
106534818--106534884
11
6.3
10
74
16
55
76
4
2
16
1.08
106534841--106534884
16
2.8
16
83
10
56
75
2
4
18
1.09
106534977--106535058
20
4.0
20
76
4
65
79
2
3
14
0.98
106534996--106535020
13
1.9
13
100
0
50
88
0
0
12
0.53
106534981--106535053
11
6.0
12
74
18
53
79
2
2
15
0.96
106534983--106535058
17
4.1
17
80
11
71
80
2
3
13
0.96
106536747--106536817
35
2.0
35
94
0
124
33
18
11
36
1.86
106537352--106537394
19
2.3
19
96
4
79
30
9
18
41
1.82
106540436--106540466
13
2.4
13
100
0
62
54
16
0
29
1.42
106546967--106546995
13
2.2
13
100
0
58
55
13
0
31
1.39
106549442--106549484
16
2.7
16
82
7
52
44
2
16
37
1.60
106553318--106553356
19
2.1
19
100
0
78
43
15
10
30
1.80
106556373--106556448
30
2.5
30
79
12
84
40
0
3
55
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106556427--106556463
19
1.9
19
88
0
56
43
0
0
56
0.99
106559033--106559060
3
9.3
3
100
0
56
67
0
32
0
0.91
106563793--106563852
19
3.1
20
85
4
70
63
5
0
31
1.16
106566575--106566612
20
1.9
20
100
0
76
60
0
0
39
0.97
106570506--106570766
127
2.0
128
99
0
515
24
22
14
39
1.91
106572304--106572339
19
1.9
18
88
5
54
33
0
5
61
1.19
106573269--106573325
29
2.0
29
82
6
71
43
5
3
47
1.43
106576088--106576128
9
4.6
9
85
8
57
24
0
7
68
1.15
106576086--106576147
9
6.6
10
78
14
53
22
1
6
69
1.20
106576246--106576413
86
1.9
88
81
3
205
35
9
17
38
1.82
106579444--106579476
15
2.1
16
88
11
50
15
0
3
81
0.80
106580571--106580680
55
2.0
55
96
0
202
33
24
7
34
1.83
106581626--106581678
18
2.9
17
81
13
54
20
0
9
69
1.15
106582256--106582303
24
2.0
25
87
4
71
54
12
8
25
1.65
106583672--106583698
3
9.0
3
100
0
54
66
0
0
33
0.92
106585404--106585659
44
5.8
44
75
10
155
30
21
17
30
1.96
106585400--106585842
89
4.9
89
74
10
301
30
21
16
32
1.95
106585397--106585656
133
2.0
132
81
2
306
30
21
17
31
1.96
106586283--106586396
44
2.6
44
79
6
124
32
24
14
28
1.95
106586413--106586596
94
2.0
94
82
2
226
26
20
19
33
1.96
106587296--106587347
15
3.5
15
86
5
61
1
5
7
84
0.84
106590975--106591100
47
2.7
47
85
4
157
29
24
15
30
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106591124--106591330
31
6.7
31
88
0
288
26
25
19
29
1.98
106591310--106591486
50
3.5
50
86
2
230
26
20
16
36
1.93
106595759--106595884
47
2.7
47
86
2
155
29
25
15
29
1.96
106597245--106597420
46
3.8
46
78
12
207
21
21
28
28
1.98
106597242--106597413
93
1.8
93
94
0
308
21
21
29
27
1.99
106598727--106598895
31
5.5
31
92
0
266
26
27
18
28
1.98
106598873--106599049
50
3.5
50
86
2
248
26
21
15
36
1.94
106602112--106602140
5
5.8
5
100
0
58
79
20
0
0
0.74
106603665--106603725
3
20.3
3
100
0
122
67
0
0
32
0.91
106603751--106603801
19
2.7
21
80
20
67
80
3
3
11
0.98
106604018--106604056
17
2.2
19
86
9
55
64
2
10
23
1.37
106605321--106605363
18
2.4
18
88
7
61
53
0
0
46
1.00
106605588--106605675
30
2.9
30
87
0
131
42
11
9
37
1.73
106612494--106612560
33
2.0
33
97
0
125
43
11
14
29
1.82
106614198--106614243
23
2.0
23
83
4
58
47
8
4
39
1.54
106614205--106614249
23
2.0
23
81
0
54
42
11
6
40
1.67
106617159--106617250
21
4.4
21
74
10
71
39
16
26
18
1.91
106617235--106617289
21
2.6
21
82
0
56
43
20
20
16
1.88
106617156--106617287
42
3.1
41
77
4
111
41
16
24
17
1.89
106619874--106620006
47
2.8
47
80
0
149
24
24
15
35
1.94
106625782--106625820
14
2.8
14
92
0
60
23
7
28
41
1.82
106629167--106629207
14
2.9
14
92
0
73
19
7
34
39
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106640498--106640544
23
2.0
23
95
0
85
44
21
6
27
1.76
106641603--106641651
10
4.9
10
79
0
53
24
10
2
63
1.37
106642519--106642609
41
2.2
41
79
11
98
28
9
1
60
1.36
106642538--106642612
41
1.9
38
87
12
109
26
10
1
61
1.37
106645469--106645553
15
5.4
15
67
23
50
22
3
1
72
1.06
106645491--106645552
30
2.1
30
84
6
81
24
3
1
70
1.10
106645481--106645552
20
3.8
19
77
14
69
23
2
1
72
1.06
106647463--106647513
23
2.2
23
92
0
84
39
5
29
25
1.79
106647463--106647523
23
2.6
23
84
2
59
42
6
27
22
1.78
106649852--106649890
16
2.4
16
91
0
60
25
15
15
43
1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362