Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  15  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4745753--4745786
17
2.0
17
94
0
59
50
0
5
44
1.26
4749898--4749942
23
2.0
23
87
8
67
46
2
2
48
1.26
4751553--4751613
28
2.1
27
82
8
68
49
1
1
47
1.21
4754703--4754800
9
10.6
9
73
23
62
57
1
2
39
1.17
4754703--4754790
18
4.9
17
75
21
81
57
1
2
38
1.18
4754720--4754790
9
8.1
8
79
16
70
57
1
0
40
1.07
4754720--4754791
27
2.7
26
81
10
83
56
1
0
41
1.07
4754720--4754790
17
4.1
17
76
20
74
57
1
0
40
1.07
4755512--4755885
181
2.1
180
87
3
536
25
25
21
27
1.99
4765495--4765533
19
2.1
19
100
0
78
33
15
10
41
1.81
4785753--4785791
20
1.9
21
84
5
53
35
0
7
56
1.28
4788698--4788737
21
1.9
21
94
0
71
32
10
15
42
1.79
4792524--4792563
21
2.0
21
85
5
55
35
5
7
52
1.51
4793792--4793841
26
1.9
26
100
0
100
58
4
8
30
1.45
4794434--4794459
9
2.9
9
100
0
52
11
57
11
19
1.63
4796510--4796539
11
2.6
11
94
5
51
40
0
6
53
1.27
4798158--4798201
22
2.0
22
86
13
63
34
0
18
47
1.49
4798466--4798503
18
2.1
18
90
0
58
39
13
23
23
1.90
4799119--4799144
7
3.7
7
100
0
52
57
15
0
26
1.38
4804672--4804745
34
2.2
33
83
9
96
60
1
0
37
1.05
4810218--4810242
3
8.3
3
100
0
50
32
0
68
0
0.90
4814857--4814892
18
1.9
19
88
5
56
0
19
13
66
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4815421--4815474
10
5.3
10
76
12
56
70
7
1
20
1.21
4815421--4815474
11
5.2
11
73
10
51
70
7
1
20
1.21
4816921--4816975
16
3.4
16
90
5
85
36
7
27
29
1.84
4816957--4817045
44
2.0
45
85
12
121
33
4
23
38
1.75
4817143--4817280
59
2.4
57
84
6
170
50
2
0
46
1.18
4817207--4817250
15
2.9
15
86
3
52
56
0
0
43
0.99
4817174--4817301
57
2.3
54
80
14
143
53
3
0
41
1.24
4819793--4820053
46
5.6
47
78
10
198
25
29
18
26
1.98
4819840--4820053
48
4.6
49
79
11
209
25
29
17
26
1.98
4825541--4825592
26
2.0
25
85
3
68
51
3
0
44
1.19
4825670--4825765
44
2.1
45
83
7
115
33
22
5
38
1.77
4825752--4825798
16
2.9
16
90
0
67
27
23
6
42
1.78
4826726--4826757
16
2.0
16
93
0
55
43
15
6
34
1.72
4830401--4830468
34
2.0
34
100
0
136
29
23
5
41
1.78
4832139--4832203
32
2.0
32
100
0
130
33
9
24
32
1.87
4833152--4833183
16
2.0
16
100
0
64
31
18
6
43
1.75
4833877--4833922
18
2.8
17
78
15
53
0
28
41
30
1.56
4834484--4834518
5
7.4
5
87
12
56
62
0
0
37
0.95
4836395--4836468
36
2.1
36
86
0
103
32
18
10
37
1.86
4841875--4841956
42
2.0
42
85
0
110
30
10
21
36
1.88
4846725--4846757
7
4.7
7
88
11
50
0
69
0
30
0.88
4858161--4858201
20
2.0
20
100
0
82
39
24
17
19
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4860083--4860133
14
3.7
14
75
12
52
49
5
3
41
1.45
4860115--4860147
14
2.4
14
90
5
50
54
0
3
42
1.15
4860429--4860476
22
2.3
21
86
13
64
66
0
4
29
1.10
4860532--4860565
12
3.0
12
91
8
54
70
0
8
20
1.13
4860644--4860690
19
2.3
22
75
17
55
34
4
0
61
1.15
4860896--4860956
30
2.1
29
82
14
74
27
1
1
68
1.08
4861724--4861800
30
2.8
28
84
13
97
24
5
19
50
1.68
4862496--4862538
16
2.8
15
86
6
59
30
6
0
62
1.21
4862642--4862673
16
2.0
16
93
0
55
21
21
6
50
1.71
4862783--4862820
12
3.1
13
81
11
53
31
5
0
63
1.17
4862866--4862926
22
2.8
22
80
2
61
18
6
6
68
1.33
4869327--4869431
40
2.6
41
92
3
178
38
12
25
23
1.90
4873543--4873598
16
3.4
16
76
13
60
12
7
21
58
1.57
4873533--4873597
33
1.9
34
87
3
96
16
7
21
53
1.68
4873842--4873875
13
2.6
13
90
9
52
35
0
0
64
0.94
4875158--4875214
24
2.4
24
78
0
69
40
14
14
31
1.85
4880312--4880350
16
2.5
15
83
4
51
51
5
0
43
1.24
4887719--4887774
16
3.5
16
85
4
78
35
5
28
30
1.80
4887756--4887849
44
2.1
44
86
4
125
32
6
26
34
1.82
4887936--4888055
58
2.1
58
82
3
143
49
2
2
45
1.29
4891130--4891194
33
2.0
33
93
0
112
47
10
30
10
1.73
4894738--4894778
3
13.7
3
100
0
82
34
0
0
65
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4899942--4900572
44
13.8
44
72
12
441
32
18
21
28
1.97
4899899--4900632
232
3.2
232
98
0
1407
31
18
21
27
1.97
4902281--4902315
3
11.7
3
100
0
70
34
0
0
65
0.93
4906448--4906499
16
3.2
16
83
0
59
28
19
5
46
1.73
4906458--4906514
16
3.6
15
81
9
60
28
17
3
50
1.62
4913731--4913800
29
2.5
28
80
11
72
58
2
2
35
1.28
4913722--4913794
37
2.0
37
86
5
103
60
2
2
34
1.25
4913965--4914002
20
1.9
20
84
10
51
63
0
2
34
1.09
4914163--4914210
19
2.5
20
79
3
53
39
2
0
58
1.10
4916685--4916743
18
3.3
18
82
0
73
30
11
18
38
1.87
4917450--4917505
21
2.7
21
80
0
67
21
26
30
21
1.98
4925085--4925136
8
6.8
8
80
8
63
38
1
1
57
1.21
4932372--4932444
28
2.6
28
95
4
130
43
13
10
31
1.79
4937770--4937950
40
4.5
40
97
0
326
21
18
29
30
1.97
4941097--4941159
32
1.9
33
83
3
83
63
4
7
23
1.41
4942353--4942437
44
1.9
44
80
7
100
45
0
7
47
1.30
4943860--4943900
20
2.1
19
86
13
57
65
0
0
34
0.93
4948716--4948745
11
2.7
11
94
0
51
86
0
13
0
0.57
4958736--4958803
30
2.3
30
84
5
84
48
5
17
27
1.70
4961215--4961488
46
6.0
46
92
0
415
39
14
22
22
1.90
4962081--4962122
5
9.0
5
85
15
63
40
0
0
59
0.97
4962081--4962122
13
3.0
14
89
10
68
40
0
0
59
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4962088--4962122
18
2.0
17
94
5
61
40
0
0
60
0.97
4965912--4966052
57
2.4
58
79
8
144
29
21
18
31
1.97
4966295--4966323
14
2.0
15
93
6
51
31
0
20
48
1.50
4966838--4966867
15
2.0
15
93
0
51
26
0
16
56
1.40
4967440--4967568
43
3.0
43
78
13
131
24
19
26
30
1.98
4971431--4971531
49
2.1
47
85
7
143
28
15
9
45
1.79
4974493--4974519
6
4.5
6
100
0
54
55
29
14
0
1.40
4975436--4975470
17
2.1
17
94
0
61
31
8
11
48
1.69
4983362--4983423
31
2.0
31
100
0
124
48
9
19
22
1.78
4986919--4986959
13
2.8
15
78
14
50
58
2
0
39
1.11
4987033--4987084
23
2.4
21
87
6
68
48
0
3
48
1.20
4987023--4987084
23
2.8
23
77
18
60
48
0
3
48
1.17
4993223--4993341
43
2.8
41
81
7
148
30
15
26
27
1.96
4993428--4993473
20
2.3
20
84
0
65
32
4
30
32
1.77
4998510--4998661
32
4.7
33
75
6
94
34
11
23
30
1.91
4998521--4998632
33
3.5
33
79
2
102
32
10
23
33
1.89
4998814--4998856
16
2.7
16
74
0
50
41
9
9
39
1.69
5003680--5003709
8
3.8
8
90
0
51
70
0
0
30
0.88
5003683--5003714
16
2.0
16
93
0
55
65
0
0
34
0.93
5005783--5005875
18
5.2
18
88
0
141
27
23
16
32
1.96
5005783--5005875
36
2.6
36
91
0
159
27
23
16
32
1.96
5018340--5018382
16
2.7
16
82
7
52
37
16
2
44
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5019336--5019381
18
2.5
19
86
6
60
8
15
2
73
1.16
5019410--5019471
29
2.1
31
79
11
76
46
1
1
50
1.20
5023649--5023681
2
16.5
2
100
0
66
51
0
0
48
1.00
5026853--5026975
14
9.3
14
69
20
59
33
4
2
59
1.32
5026878--5026954
11
6.5
11
72
20
57
36
2
0
61
1.10
5026889--5026954
25
2.7
24
88
4
80
34
3
0
62
1.11
5026995--5027019
12
2.1
12
100
0
50
32
8
0
60
1.26
5030075--5030126
26
2.0
26
96
0
95
28
34
23
13
1.92
5030178--5030229
26
2.0
26
96
0
95
28
34
23
13
1.92
5030044--5030306
103
2.6
103
92
3
424
30
30
20
18
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362