genome.fa.s8.2.7.7.80.10.50.1000.321.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  321  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107299412--107299442	15	2.1	15	93	0	53	45	3	22	29	1.68
107299824--107300014	100	1.9	99	91	1	310	34	6	12	47	1.67
107300119--107300239	61	2.0	61	85	3	163	47	7	8	37	1.62
107302246--107302291	20	2.2	20	84	3	56	69	8	4	17	1.31
107313909--107314074	43	3.8	43	76	0	170	28	13	28	29	1.95
107313909--107314074	86	1.9	87	86	1	235	28	13	28	29	1.95
107314312--107314357	21	2.2	21	88	0	65	4	50	17	28	1.65
107314770--107314798	13	2.1	14	93	6	51	55	10	0	34	1.34
107318764--107318797	13	2.6	13	90	0	50	14	23	41	20	1.89
107319157--107319183	14	1.9	14	100	0	54	22	7	11	59	1.56
107322885--107323008	55	2.3	55	79	8	137	26	32	27	13	1.94
107327290--107327339	24	2.1	24	96	0	91	28	0	48	24	1.52
107327662--107327704	19	2.3	19	88	8	61	20	4	4	69	1.25
107327662--107327706	20	2.3	20	88	3	65	22	4	4	68	1.25
107327974--107328065	7	12.9	7	69	17	64	45	35	0	18	1.50
107327974--107328029	15	3.8	15	74	11	62	50	33	0	16	1.45
107327975--107328145	14	11.9	14	70	10	76	46	31	0	21	1.56
107328021--107328060	20	2.0	20	85	9	55	40	40	0	20	1.52
107328047--107328081	15	2.4	14	86	9	52	45	31	0	22	1.53
107328443--107328486	14	3.1	14	80	0	52	45	31	2	20	1.64
107328737--107328776	20	2.0	20	85	9	55	52	5	7	35	1.51
107334977--107335237	51	5.2	51	87	1	382	32	14	22	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107334977--107335240	101	2.6	101	95	0	456	32	14	23	29	1.94
107344945--107345005	16	4.0	15	79	10	70	45	9	1	42	1.47
107345087--107345118	16	1.9	17	93	6	57	43	15	3	37	1.63
107345092--107345126	16	2.2	16	89	0	52	51	14	2	31	1.57
107350298--107350350	26	2.0	26	85	7	72	37	22	15	24	1.92
107361213--107361252	18	2.2	19	86	4	55	80	0	5	15	0.88
107365731--107365763	16	2.0	17	88	5	50	54	3	3	39	1.31
107368151--107368180	16	1.9	15	93	6	51	36	0	0	63	0.95
107369802--107369831	15	1.9	16	93	6	53	23	0	3	73	0.98
107371119--107371143	13	1.9	13	100	0	50	24	16	0	60	1.36
107372443--107372501	30	2.0	30	96	0	109	35	22	10	32	1.87
107375793--107375967	94	1.9	94	83	4	228	28	18	28	25	1.98
107375892--107376019	48	2.7	48	87	2	186	24	18	31	25	1.98
107376620--107376664	11	3.9	11	80	11	54	35	0	2	62	1.08
107378794--107379113	46	7.0	46	91	0	480	38	15	23	22	1.92
107387753--107387783	13	2.3	13	94	5	53	0	9	0	90	0.46
107387753--107387782	11	2.7	11	94	0	51	0	10	0	90	0.47
107390887--107391150	132	2.0	132	97	0	501	30	23	11	34	1.90
107410113--107410151	3	13.3	3	84	15	55	28	0	0	71	0.86
107410113--107410154	13	3.1	14	90	10	70	28	0	0	71	0.86
107426388--107426485	49	2.0	49	95	0	178	38	10	29	21	1.86
107428652--107428772	29	4.2	28	80	4	125	28	28	14	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107433683--107433730	16	3.1	15	87	6	69	66	4	0	29	1.10
107433679--107433734	24	2.3	24	80	17	71	67	3	0	28	1.07
107433690--107433730	8	5.4	7	91	8	55	65	4	0	29	1.13
107433966--107434096	25	5.6	24	73	10	94	59	3	3	34	1.28
107433966--107434094	48	2.8	44	75	15	118	59	3	3	34	1.28
107434567--107434711	30	4.8	30	93	1	229	20	4	48	26	1.67
107435478--107435528	14	3.6	14	77	12	50	62	3	13	19	1.46
107435551--107435840	73	3.7	73	69	16	229	34	20	16	28	1.94
107435665--107435691	14	1.9	14	100	0	54	59	7	18	14	1.58
107435496--107436004	165	3.0	167	85	8	704	37	19	16	26	1.93
107435821--107435870	14	3.6	14	81	7	57	64	4	12	20	1.43
107435850--107436090	78	3.2	77	84	6	304	37	19	15	26	1.92
107435850--107436090	70	3.3	70	80	10	266	37	19	15	26	1.92
107436095--107436232	71	1.9	71	92	0	231	31	17	17	34	1.93
107435972--107436323	159	2.2	154	82	9	428	34	18	16	30	1.93
107436383--107436648	77	3.6	74	85	5	349	31	21	15	31	1.94
107435971--107436726	417	1.8	416	82	7	994	35	19	16	29	1.93
107436515--107436804	160	1.8	159	89	3	458	33	22	15	28	1.95
107436657--107436796	70	2.0	73	91	4	232	38	23	15	22	1.92
107436955--107437234	72	3.7	75	83	6	327	33	18	14	32	1.92
107437222--107437248	14	1.9	14	100	0	54	59	7	18	14	1.58
107437142--107437306	91	1.8	89	83	6	217	35	18	17	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107437142--107437324	89	2.1	88	81	10	212	37	18	17	26	1.93
107436950--107437606	77	8.5	77	74	12	474	33	19	15	31	1.93
107437624--107437800	72	2.5	70	84	4	205	33	22	15	28	1.94
107438574--107438679	41	2.6	40	79	10	108	15	28	15	41	1.87
107445920--107446285	48	7.6	47	83	6	326	28	20	27	23	1.99
107445917--107446285	96	3.9	95	84	2	391	28	20	27	23	1.99
107445959--107446285	144	2.3	144	81	3	363	28	20	27	23	1.99
107447473--107447553	21	3.9	21	91	1	119	11	38	25	24	1.89
107457904--107457947	14	3.0	14	80	6	52	47	0	6	45	1.29
107459281--107459305	13	1.9	13	100	0	50	24	0	20	56	1.43
107465720--107465773	20	2.6	21	82	11	67	35	0	7	57	1.27
107467939--107468213	46	6.0	46	83	5	306	41	14	22	21	1.90
107467950--107468198	138	1.8	138	87	1	374	42	14	22	20	1.88
107467935--107468208	92	3.0	92	86	2	381	41	14	22	21	1.89
107469635--107469748	56	2.0	56	98	0	219	35	7	21	35	1.80
107471110--107471163	20	2.6	21	82	11	67	35	0	7	57	1.27
107471149--107471191	20	2.2	20	87	4	61	23	2	0	74	0.93
107471153--107471199	14	3.8	12	78	15	51	25	2	0	72	0.96
107471149--107471199	19	2.7	20	84	6	61	25	1	0	72	0.95
107473280--107473511	46	5.0	46	88	2	313	42	15	21	20	1.89
107473294--107473511	92	2.4	92	92	0	346	42	16	21	19	1.89
107474228--107474294	29	2.3	29	84	5	82	20	22	22	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107474253--107474310	29	2.0	29	82	0	71	25	15	25	32	1.95
107474319--107474386	29	2.3	29	89	0	109	25	16	19	39	1.91
107474396--107474452	28	2.0	29	86	3	80	31	17	21	29	1.96
107476333--107476397	30	2.2	30	88	5	96	23	3	12	61	1.45
107478533--107478582	22	2.3	22	78	0	55	44	0	6	50	1.26
107478592--107478662	29	2.4	30	80	4	81	36	0	5	57	1.22
107480805--107480871	30	2.2	30	97	0	125	38	13	2	44	1.59
107481629--107481683	16	3.4	16	70	5	56	67	5	5	21	1.32
107481636--107481689	17	3.2	17	68	5	56	64	7	5	22	1.40
107481621--107481692	33	2.2	33	97	0	135	63	5	9	20	1.44
107483091--107483321	124	1.9	124	88	1	356	42	9	16	31	1.80
107484614--107484657	9	4.8	9	77	5	52	22	40	2	34	1.67
107488835--107489054	47	4.8	45	85	9	218	29	27	20	23	1.99
107488886--107489008	47	2.6	47	100	0	246	28	27	20	23	1.99
107491708--107491736	6	4.8	6	100	0	58	86	0	13	0	0.58
107526128--107526311	40	4.6	40	82	6	196	23	20	27	28	1.99
107526128--107526308	80	2.3	81	83	9	221	23	20	27	27	1.99
107526209--107526358	40	3.8	38	80	10	131	25	22	28	24	1.99
107541897--107542027	46	2.8	47	79	14	155	21	19	29	29	1.98
107541895--107542020	47	2.7	46	83	13	152	21	20	29	28	1.98
107549348--107549523	46	3.8	46	79	12	216	20	21	29	28	1.98
107549345--107549516	93	1.8	93	96	0	317	20	21	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107554838--107554875	17	2.2	18	90	4	60	21	26	34	18	1.96
107555047--107555198	27	5.6	27	88	0	214	41	21	7	30	1.80
107555055--107555254	54	3.7	54	82	1	240	39	22	8	30	1.83
107555037--107555199	81	2.0	81	90	0	254	39	20	7	31	1.80
107555047--107555252	81	2.5	81	84	3	236	40	22	8	28	1.83
107555072--107555287	27	8.0	27	78	8	109	38	21	7	31	1.82
107555298--107555405	27	4.0	27	89	2	137	33	21	21	24	1.97
107555796--107555857	22	2.9	21	80	7	70	20	25	22	30	1.98
107555984--107556084	27	3.7	27	81	5	114	21	22	18	36	1.95
107555986--107556089	54	1.9	53	82	1	127	21	23	18	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362