Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  316  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105606536--105606818
36
7.6
36
70
12
187
36
15
12
35
1.86
105606617--105606818
72
2.8
71
82
5
237
37
15
11
35
1.85
105606984--105607167
45
4.1
45
87
0
242
41
20
17
19
1.90
105607576--105607622
5
9.2
5
90
4
58
36
25
0
38
1.56
105607755--105607814
29
2.0
30
81
9
70
30
8
1
60
1.36
105607984--105608044
21
2.9
21
79
13
63
47
18
0
34
1.49
105609235--105609289
25
2.1
26
83
6
67
1
25
5
67
1.22
105609289--105609332
9
5.0
9
81
13
56
56
2
0
40
1.11
105609300--105609341
18
2.3
18
100
0
84
61
4
0
33
1.17
105610678--105610745
20
3.7
18
79
12
59
61
1
1
35
1.14
105610738--105610786
25
1.9
25
83
4
62
46
4
0
48
1.20
105610879--105610936
31
2.0
28
86
10
80
51
1
0
46
1.11
105613893--105613952
19
3.3
17
80
17
59
58
3
0
38
1.15
105613903--105613943
17
2.4
17
88
8
57
56
2
0
41
1.13
105622601--105622640
19
2.1
20
86
9
57
27
0
5
67
1.11
105624496--105624520
3
8.3
3
100
0
50
0
36
0
64
0.94
105625260--105625300
21
2.0
21
90
4
66
56
0
0
43
0.99
105625269--105625294
13
2.0
13
100
0
52
53
0
0
46
1.00
105635323--105635352
15
2.0
15
100
0
60
40
13
13
33
1.83
105635583--105635618
15
2.4
15
85
0
54
50
0
13
36
1.43
105638638--105638662
13
1.9
13
100
0
50
80
4
8
8
1.03
105653756--105653852
28
3.5
28
91
0
122
30
12
25
30
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105664195--105664345
40
3.8
40
81
8
168
28
19
23
29
1.98
105664773--105664836
22
2.9
22
86
4
85
25
1
46
26
1.61
105664801--105664833
15
2.3
15
89
5
50
24
3
51
21
1.62
105664801--105664842
14
2.9
14
82
10
50
23
2
47
26
1.64
105664868--105664944
14
5.4
14
70
20
52
20
1
36
41
1.61
105664906--105664955
22
2.3
22
83
10
59
24
0
38
38
1.56
105664902--105664950
15
3.4
14
81
13
55
20
0
38
40
1.53
105665449--105665492
18
2.4
18
85
7
54
22
40
0
36
1.54
105669447--105669532
21
4.1
21
86
0
100
36
25
22
16
1.94
105669902--105669959
15
3.8
15
88
2
89
51
12
0
36
1.39
105671235--105671269
5
7.0
5
100
0
70
60
0
0
40
0.97
105671292--105671320
8
3.6
8
100
0
58
62
0
0
37
0.96
105672379--105672412
15
2.3
15
94
0
59
14
11
20
52
1.73
105676457--105676660
90
2.3
90
78
5
232
29
14
21
34
1.93
105678406--105678464
10
5.9
10
76
7
66
20
10
3
66
1.36
105680153--105680371
40
5.5
39
91
2
280
23
27
24
24
2.00
105685528--105685561
17
2.0
17
94
0
59
44
50
0
5
1.26
105690167--105690200
17
2.0
17
94
0
59
44
50
0
5
1.26
105691037--105691090
3
18.3
3
78
17
60
62
0
3
33
1.12
105691303--105691355
3
18.3
3
80
7
65
60
0
5
33
1.20
105691704--105691766
17
3.5
17
72
10
54
57
6
6
30
1.49
105691894--105691936
22
2.0
22
86
9
61
51
11
0
37
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105692080--105692115
15
2.4
14
86
13
54
55
2
2
38
1.29
105692814--105692866
21
2.7
21
85
11
76
75
0
7
16
1.02
105692821--105692867
23
2.0
24
91
4
78
74
0
6
19
1.03
105694505--105694598
39
2.3
40
82
8
102
30
14
26
27
1.95
105695280--105695327
21
2.3
21
77
0
60
16
0
29
54
1.43
105695320--105695377
14
4.1
14
75
4
53
24
1
29
44
1.63
105695352--105695417
28
2.3
29
82
7
82
24
0
22
53
1.47
105695420--105695457
14
2.7
14
80
11
51
21
0
28
50
1.49
105695894--105695982
40
2.2
40
89
0
133
35
20
21
22
1.96
105699551--105699620
24
2.6
27
71
17
74
11
15
18
54
1.71
105701237--105701330
9
10.3
9
77
10
93
45
20
1
32
1.58
105701237--105701330
26
3.4
27
84
8
111
45
20
1
32
1.58
105706387--105706415
14
2.1
14
93
6
51
34
0
10
55
1.34
105707190--105707412
43
5.2
42
73
12
177
26
14
25
32
1.95
105708742--105708776
7
4.7
7
89
10
52
71
0
2
25
1.00
105708742--105708776
15
2.3
15
90
9
54
71
0
2
25
1.00
105712193--105712577
140
2.8
140
87
2
533
28
20
20
30
1.98
105712487--105712690
109
1.9
109
83
0
264
26
19
20
33
1.96
105712347--105712814
249
1.9
249
83
0
614
26
19
21
32
1.97
105715708--105715934
40
5.7
40
89
0
328
17
22
28
31
1.96
105719822--105719882
30
2.0
30
100
0
122
26
3
26
44
1.69
105725014--105725045
14
2.3
14
94
0
55
81
0
18
0
0.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105727125--105727164
21
1.9
21
90
10
64
12
0
35
52
1.39
105727955--105727995
9
4.6
9
90
0
64
58
4
34
2
1.32
105727955--105728006
6
8.7
6
86
0
59
55
5
34
3
1.42
105727964--105728059
18
5.4
18
69
16
74
52
11
33
3
1.53
105727975--105728086
53
2.1
53
100
0
224
50
14
32
3
1.60
105732008--105732048
21
2.0
21
90
0
64
29
21
29
19
1.98
105735854--105736038
35
5.2
35
77
10
162
24
15
16
43
1.86
105735851--105736101
36
7.0
36
76
9
183
23
16
17
42
1.88
105735863--105736101
72
3.3
72
77
6
202
23
15
17
43
1.87
105739568--105739606
19
2.0
20
85
5
53
23
0
10
66
1.22
105739952--105740087
9
14.4
9
72
18
75
33
1
0
64
1.08
105739951--105740063
19
5.8
20
73
17
69
34
1
0
62
1.11
105739980--105740055
10
7.7
10
73
19
52
32
0
1
65
1.01
105739976--105740008
11
3.0
11
86
13
50
36
0
0
63
0.95
105739977--105740035
10
5.8
11
79
16
56
28
0
1
69
0.98
105739979--105740088
29
3.8
29
76
11
95
30
0
0
67
1.03
105739980--105740063
19
4.3
20
74
15
77
32
1
1
65
1.08
105748061--105748105
23
2.0
23
86
8
65
48
4
4
42
1.43
105751902--105751932
14
2.2
14
100
0
62
41
0
22
35
1.54
105754838--105754894
27
2.1
27
93
0
96
54
7
24
14
1.64
105757431--105757499
31
2.3
31
85
9
99
43
20
10
26
1.83
105762580--105762961
189
2.0
189
92
2
633
23
27
18
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105771641--105771710
16
4.4
16
94
0
104
31
0
34
34
1.58
105771689--105771798
45
2.6
41
78
9
116
35
4
28
31
1.77
105771944--105771978
18
2.0
17
88
5
52
54
0
0
45
0.99
105771831--105772147
157
2.0
157
98
0
607
44
3
5
47
1.41
105772101--105772135
18
2.0
17
88
5
52
54
0
0
45
0.99
105771905--105772213
157
2.0
153
82
7
361
46
4
3
44
1.42
105779360--105779426
3
22.7
3
72
14
50
35
0
5
58
1.23
105780676--105780743
21
3.3
21
68
15
61
32
8
20
38
1.84
105780657--105780743
40
2.2
40
89
0
129
31
8
20
40
1.82
105783328--105783388
30
2.0
30
87
0
86
31
22
6
39
1.80
105784377--105784483
45
2.4
45
84
3
135
23
17
15
42
1.88
105790491--105790572
3
27.3
3
73
16
55
37
0
4
57
1.20
105791064--105791102
17
2.2
18
90
4
62
74
0
25
0
0.82
105791062--105791103
18
2.3
18
84
8
59
73
0
26
0
0.83
105792091--105792203
45
2.5
45
86
2
147
23
18
16
40
1.91
105803862--105804110
50
4.8
50
85
4
284
20
29
24
26
1.99
105803861--105804110
100
2.4
104
88
6
357
20
29
24
26
1.99
105804205--105804236
13
2.5
13
94
0
55
56
12
0
31
1.37
105804448--105804504
30
1.9
29
85
3
78
31
24
1
42
1.65
105809369--105809449
36
2.2
36
84
2
99
40
24
11
23
1.87
105813663--105813695
16
2.1
16
100
0
66
63
24
0
12
1.28
105816062--105816126
24
2.6
25
77
15
73
18
27
23
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105815994--105816126
25
5.4
24
72
14
92
18
27
20
34
1.95
105815994--105816156
74
2.2
75
82
9
208
18
27
19
34
1.95
105828784--105828888
52
2.0
52
94
0
183
27
23
19
29
1.98
105829169--105829207
21
1.9
20
89
5
60
20
23
28
28
1.99
105835271--105835350
42
1.9
42
100
0
160
25
30
11
33
1.90
105835612--105835680
9
7.7
9
88
0
93
50
20
4
24
1.66
105835612--105835680
36
1.9
36
93
0
120
50
20
4
24
1.66
105835700--105835744
6
7.2
6
87
9
63
20
0
2
77
0.87
105835772--105835802
5
6.2
5
100
0
62
0
0
58
41
0.98
105838244--105838330
42
2.1
42
100
0
174
36
17
9
36
1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362