Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  286  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96188853--96189067
46
4.7
46
78
10
156
27
18
27
26
1.98
96191830--96191863
16
2.1
16
88
0
50
61
0
14
23
1.33
96192539--96192582
17
2.6
17
96
0
79
20
4
25
50
1.67
96193112--96193147
18
2.0
18
100
0
72
33
5
27
33
1.80
96193220--96193269
22
2.3
22
79
6
57
32
4
10
54
1.52
96200244--96200308
26
2.5
26
82
9
71
52
0
20
27
1.47
96200411--96200446
18
2.0
18
100
0
72
33
5
27
33
1.80
96200955--96201044
42
2.2
42
78
9
96
24
33
25
16
1.96
96210258--96210313
29
1.9
29
100
0
112
33
12
21
32
1.91
96214215--96214278
7
9.0
7
91
1
101
25
1
14
59
1.44
96220969--96221144
46
3.8
45
79
12
205
19
21
30
28
1.97
96220965--96221136
93
1.8
93
94
0
308
19
20
31
27
1.97
96224464--96224857
126
3.1
125
86
2
560
30
17
14
37
1.90
96224955--96225078
34
3.7
34
73
10
112
42
15
1
40
1.56
96225613--96225653
13
3.2
13
80
13
57
65
0
0
34
0.93
96226377--96226450
30
2.4
31
77
11
80
28
5
0
66
1.14
96226379--96226507
11
12.4
11
69
10
58
27
6
0
65
1.16
96226372--96226434
21
3.0
21
85
2
72
26
6
0
66
1.15
96226393--96226459
21
3.3
20
81
8
66
25
5
0
68
1.12
96226399--96226524
20
6.3
20
74
13
91
26
4
0
69
1.08
96229744--96229838
32
3.0
32
88
0
136
28
26
10
34
1.89
96229917--96230015
28
3.5
28
81
0
126
23
28
19
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96229917--96230042
56
2.2
56
90
0
189
23
30
19
27
1.98
96229941--96230042
28
3.6
28
81
5
125
23
32
17
26
1.97
96236208--96236308
39
2.6
39
95
0
175
29
21
25
22
1.99
96236712--96236827
58
2.0
58
100
0
232
34
17
17
31
1.93
96238267--96238910
47
13.6
47
92
2
929
28
29
9
33
1.88
96238267--96238910
143
4.5
143
90
3
932
28
29
9
33
1.88
96240176--96240354
85
2.1
85
98
0
349
26
27
8
37
1.85
96246303--96246331
3
9.7
3
100
0
58
0
31
0
68
0.89
96264652--96264685
17
2.0
17
100
0
68
47
11
11
29
1.76
96276397--96276486
27
3.3
27
77
9
69
18
25
20
35
1.95
96278526--96278578
5
9.8
5
84
15
54
77
1
0
20
0.87
96278529--96278576
6
7.5
6
77
13
51
79
2
0
18
0.84
96286515--96287574
528
2.0
528
99
0
2093
21
22
24
31
1.98
96289548--96289594
5
9.0
5
82
17
60
76
2
0
21
0.89
96289542--96289596
22
2.4
23
88
11
87
74
1
0
23
0.91
96300420--96300457
18
2.1
18
100
0
76
60
5
13
21
1.52
96300636--96300693
29
2.0
29
93
0
98
44
3
17
34
1.65
96301164--96301461
89
3.1
95
80
14
294
27
0
13
58
1.41
96301205--96301467
89
2.8
95
82
12
305
27
0
14
57
1.41
96301495--96301535
21
2.0
21
90
9
66
29
0
4
65
1.13
96301830--96301854
13
1.9
13
100
0
50
52
8
0
40
1.31
96303653--96303806
43
3.6
42
78
6
125
28
16
23
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96306371--96306540
45
3.7
45
79
14
188
28
28
20
22
1.99
96306376--96306544
92
1.8
92
92
2
286
28
28
20
21
1.98
96311671--96311800
47
2.8
48
75
11
144
30
26
19
23
1.98
96312625--96312677
26
2.0
26
92
0
88
18
32
41
7
1.79
96313976--96314028
25
2.1
25
92
0
88
30
0
18
50
1.47
96314302--96314425
43
2.9
42
79
7
142
26
16
25
31
1.96
96318237--96318271
17
2.1
17
94
0
61
37
31
14
17
1.89
96321904--96322024
43
2.8
46
79
13
139
25
14
28
31
1.95
96327912--96328178
115
2.4
106
79
10
320
55
13
2
28
1.50
96328642--96328699
29
2.0
29
96
0
107
29
20
8
41
1.82
96330027--96330052
2
13.0
2
100
0
52
50
0
0
50
1.00
96330475--96330520
24
1.9
24
86
0
65
45
36
6
10
1.65
96330759--96330790
13
2.3
15
89
10
50
18
3
6
71
1.20
96335361--96335489
29
4.4
30
70
18
85
27
6
3
62
1.37
96341227--96341273
21
2.2
22
92
3
78
21
38
19
21
1.94
96367441--96367474
17
2.0
17
88
11
52
32
0
5
61
1.20
96368767--96368809
11
3.8
12
84
9
63
48
0
16
34
1.46
96368767--96368809
6
7.5
6
84
10
63
48
0
16
34
1.46
96368767--96368808
17
2.5
17
92
0
75
50
0
16
33
1.46
96368760--96368809
23
2.1
24
89
10
77
46
0
16
38
1.47
96368893--96368922
13
2.2
14
94
5
53
23
3
36
36
1.71
96368976--96369046
28
2.5
28
82
8
81
22
2
29
45
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96370660--96370692
11
3.1
11
86
4
50
36
0
0
63
0.95
96370815--96370877
30
2.1
30
96
0
117
57
12
3
26
1.51
96373913--96374028
17
6.6
17
88
5
169
39
12
12
36
1.80
96373905--96374028
35
3.5
36
95
2
216
39
11
12
36
1.80
96373897--96374028
52
2.5
52
83
11
162
39
12
12
36
1.80
96374336--96374369
12
2.9
11
87
12
50
35
0
0
64
0.94
96374337--96374442
21
5.3
21
68
19
59
36
2
0
59
1.19
96374334--96374364
16
2.0
16
93
6
55
35
0
0
64
0.94
96374821--96374858
3
12.3
3
88
5
58
31
0
0
68
0.90
96380313--96380373
13
4.5
13
80
15
54
83
0
14
1
0.72
96380316--96380371
22
2.5
22
88
8
87
83
0
14
1
0.72
96380314--96380373
31
2.0
30
86
3
84
83
0
15
1
0.73
96381449--96381529
17
4.6
17
90
6
126
39
12
12
35
1.81
96381441--96381529
35
2.5
36
94
3
162
39
11
13
35
1.80
96381456--96381538
19
4.4
20
81
13
74
40
9
14
34
1.79
96381443--96381535
17
5.3
17
71
20
75
39
10
13
35
1.80
96381837--96381870
12
2.9
11
87
12
50
35
0
0
64
0.94
96381838--96381946
21
5.3
21
66
20
61
36
2
0
59
1.18
96381835--96381865
16
2.0
16
93
6
55
35
0
0
64
0.94
96381886--96381992
7
15.7
7
69
18
50
38
4
0
57
1.20
96387894--96388186
78
3.8
78
89
3
457
32
20
23
24
1.98
96387894--96388186
154
1.9
154
90
1
471
32
20
23
24
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96388126--96388349
45
4.9
45
77
5
209
31
16
25
25
1.96
96388714--96388777
17
3.6
17
87
8
92
37
12
14
35
1.83
96388714--96388777
18
3.6
18
93
4
103
37
12
14
35
1.83
96388706--96388777
19
3.9
19
89
10
114
37
12
13
36
1.83
96388738--96388800
23
3.0
22
84
11
71
36
7
17
38
1.79
96389067--96389103
19
2.0
18
89
5
56
29
0
0
70
0.88
96391585--96391637
26
2.0
27
85
7
74
24
15
22
37
1.92
96393123--96393205
26
3.2
26
96
0
148
36
25
4
33
1.77
96393680--96393730
24
2.1
24
88
0
75
37
1
3
56
1.29
96397075--96397106
16
2.0
16
93
0
55
28
0
6
65
1.16
96403812--96403845
17
1.9
18
88
5
52
23
5
8
61
1.47
96405571--96405605
16
2.2
16
95
5
63
57
14
0
28
1.38
96408197--96408239
21
2.0
21
100
0
86
37
0
25
37
1.56
96412792--96412820
13
2.1
14
93
6
51
51
3
0
44
1.18
96413281--96413341
23
2.4
26
81
10
74
42
3
6
47
1.45
96413915--96413951
18
2.1
18
100
0
74
40
10
10
37
1.75
96416606--96416682
30
2.6
29
82
8
93
49
5
12
32
1.63
96418318--96418429
54
2.1
54
98
0
215
58
12
1
26
1.44
96418329--96418441
54
2.1
54
88
3
165
62
10
1
24
1.37
96425581--96425627
24
2.0
23
88
12
69
19
19
23
38
1.93
96428249--96428285
20
1.9
20
88
5
58
35
8
16
40
1.78
96439820--96439983
72
2.3
72
77
6
163
26
17
26
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96448483--96448523
19
2.3
19
79
8
50
36
4
7
51
1.51
96449404--96449977
286
2.0
286
95
0
1031
36
18
13
31
1.90
96451118--96451161
20
2.2
21
80
15
58
47
18
31
2
1.61
96469734--96469763
14
2.1
14
93
0
51
46
36
0
16
1.47
96475474--96475536
32
2.0
32
93
0
108
36
14
20
28
1.92
96477406--96477496
12
7.1
12
71
24
62
49
2
0
48
1.13
96477415--96477492
27
2.9
28
75
19
78
48
2
0
48
1.15
96477452--96477495
16
2.6
17
86
13
65
52
0
0
47
1.00
96480852--96480916
31
2.0
31
85
11
85
70
4
1
23
1.14
96493651--96493702
27
2.0
26
84
3
68
17
26
21
34
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362