Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  358  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
118213299--118213374
33
2.4
33
76
12
86
46
6
18
28
1.74
118217913--118217952
16
2.5
16
87
0
62
57
30
0
12
1.36
118226130--118226212
32
2.6
33
88
5
109
21
12
9
56
1.64
118226147--118226212
32
2.1
32
97
0
123
21
12
9
57
1.62
118227872--118228002
65
2.0
65
96
0
244
40
14
15
29
1.87
118232823--118232860
20
1.9
20
88
0
58
15
10
2
71
1.25
118233964--118234029
32
2.1
32
100
0
132
34
9
19
36
1.84
118235869--118235947
13
6.1
13
77
5
88
35
7
21
35
1.82
118239378--118239535
82
1.9
81
82
7
194
46
12
6
34
1.67
118246854--118246878
11
2.3
11
100
0
50
64
8
0
28
1.22
118247460--118247517
25
2.5
23
74
20
57
58
1
3
36
1.25
118253034--118253086
21
2.5
21
82
11
56
58
0
0
41
0.98
118253709--118253760
8
6.0
8
77
16
50
23
1
3
71
1.13
118253709--118253760
18
2.9
18
77
11
61
23
1
3
71
1.13
118253695--118253755
25
2.3
28
83
13
76
22
0
4
72
1.04
118253708--118253766
18
3.3
18
72
11
50
23
1
5
69
1.18
118255812--118255866
29
2.0
28
89
7
85
47
14
9
29
1.75
118266514--118266540
11
2.5
11
100
0
54
29
7
0
62
1.22
118267891--118267933
21
1.9
23
86
13
63
39
2
11
46
1.53
118270643--118270690
22
2.2
22
81
7
53
39
4
2
54
1.32
118272804--118272835
12
2.7
12
90
0
55
15
68
15
0
1.21
118276092--118276116
4
6.2
4
100
0
50
72
0
0
28
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
118279907--118279945
19
2.1
19
100
0
78
41
15
10
33
1.81
118279972--118280024
26
2.0
26
100
0
106
22
22
0
54
1.45
118284613--118284677
12
5.9
10
73
23
51
64
3
3
29
1.23
118284627--118284661
3
11.7
3
93
0
61
65
0
2
31
1.07
118285946--118286351
175
2.4
170
86
2
571
29
21
18
30
1.97
118285990--118286267
87
3.2
85
75
9
281
30
21
18
29
1.97
118285972--118286438
44
10.7
45
69
13
203
28
22
19
30
1.97
118291936--118291981
24
1.9
24
100
0
92
17
30
19
32
1.95
118297481--118297897
44
9.7
42
71
12
228
30
19
22
27
1.98
118297570--118297975
175
2.4
170
88
2
589
30
19
21
28
1.97
118299243--118299301
9
5.9
10
75
16
52
28
3
3
64
1.26
118302919--118302958
20
2.0
20
90
4
64
52
15
20
12
1.74
118303201--118303258
29
2.0
29
89
0
89
36
10
10
43
1.73
118303204--118303275
29
2.5
29
81
0
81
43
12
6
37
1.70
118303889--118303939
22
2.3
23
83
16
72
45
5
0
49
1.26
118304305--118304430
60
2.1
60
88
1
182
30
7
25
37
1.83
118311837--118311869
2
17.0
2
93
6
59
51
0
0
48
1.00
118329505--118329565
29
2.0
31
84
6
81
34
1
9
54
1.44
118333926--118333986
31
2.0
31
83
6
79
34
4
1
59
1.29
118337317--118337354
19
2.0
19
100
0
76
15
31
21
31
1.94
118337802--118337850
24
2.0
25
96
4
91
32
14
16
36
1.89
118343176--118343222
23
1.9
26
83
12
64
48
2
12
36
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
118343608--118343703
40
2.5
38
80
8
104
33
7
9
50
1.62
118362129--118362185
15
4.0
13
76
15
51
45
1
5
47
1.35
118362455--118362543
30
2.9
30
83
6
99
37
10
8
43
1.70
118363721--118363760
15
2.6
16
84
11
57
22
10
0
67
1.20
118364735--118364791
27
2.1
27
100
0
114
26
40
0
33
1.56
118379465--118379517
28
2.0
26
82
14
63
32
7
3
56
1.45
118383709--118383764
29
1.9
29
85
7
78
53
3
0
42
1.18
118383710--118383763
20
2.7
19
81
16
56
55
1
0
42
1.10
118391815--118391860
21
2.2
22
88
7
69
21
19
36
21
1.95
118393587--118393845
131
2.0
131
91
1
421
38
13
15
31
1.87
118397330--118397402
31
2.4
31
80
0
92
47
2
8
41
1.47
118399919--118399945
8
3.4
8
100
0
54
33
0
25
40
1.56
118401867--118401919
27
2.0
27
81
7
63
47
3
18
30
1.67
118404033--118404058
2
13.0
2
100
0
52
0
50
0
50
1.00
118406398--118406442
21
2.1
22
95
4
83
48
0
11
40
1.39
118411480--118411529
21
2.4
22
80
10
68
10
10
12
68
1.41
118411544--118411574
16
1.9
16
100
0
62
32
6
3
58
1.40
118411704--118411737
16
2.2
16
90
10
54
35
0
2
61
1.11
118417165--118417195
16
2.0
16
93
6
55
51
0
0
48
1.00
118425602--118425704
51
2.0
51
98
0
197
38
22
14
24
1.91
118429110--118429143
12
2.8
12
86
0
50
0
11
67
20
1.21
118432730--118432788
31
1.9
31
82
6
75
28
11
16
42
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
118435230--118435406
86
2.1
86
96
0
327
48
12
8
30
1.70
118455947--118456011
32
2.0
32
100
0
130
38
40
9
12
1.75
118461943--118462018
28
2.7
28
70
15
66
31
11
3
52
1.56
118466876--118466915
4
10.0
4
83
0
53
30
2
22
45
1.66
118467830--118467855
8
3.2
8
100
0
52
23
0
11
65
1.25
118470450--118470482
11
2.9
12
91
8
52
63
0
0
36
0.95
118473053--118473396
72
4.8
72
92
1
530
25
37
14
22
1.93
118473066--118473627
144
3.8
145
86
7
779
24
37
14
23
1.92
118473399--118473627
72
3.2
72
92
0
368
22
38
15
24
1.92
118473240--118473627
159
2.5
159
85
6
518
22
38
15
23
1.92
118473168--118473883
231
2.9
242
85
7
887
23
39
14
23
1.91
118473312--118473483
87
2.0
87
95
0
308
21
37
14
26
1.92
118473635--118473672
15
2.5
15
91
0
58
10
42
15
31
1.81
118473537--118473735
108
1.8
108
94
0
353
22
41
14
22
1.89
118473476--118473801
180
1.8
180
96
0
607
22
40
14
22
1.90
118473650--118473816
72
2.3
72
93
0
289
22
41
13
22
1.89
118473794--118473836
15
2.9
15
82
0
50
13
39
18
27
1.89
118473722--118473885
87
1.9
87
96
0
301
23
41
14
21
1.89
118476195--118476219
13
1.9
13
100
0
50
28
24
0
48
1.52
118478866--118478899
17
1.9
18
88
5
52
52
2
0
44
1.16
118486878--118486964
42
2.1
42
100
0
174
33
2
11
52
1.50
118486886--118486952
21
3.2
21
61
23
50
34
2
13
49
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
118493561--118493608
18
2.8
17
84
6
60
39
8
0
52
1.32
118503039--118503064
12
2.2
12
100
0
52
50
30
0
19
1.48
118509946--118509979
18
1.9
17
88
5
50
44
17
2
35
1.64
118512408--118512456
25
1.9
26
83
4
64
16
8
6
69
1.33
118514409--118514451
12
3.5
12
75
6
50
27
11
20
39
1.88
118514399--118514451
25
2.1
25
100
0
106
26
13
20
39
1.89
118517661--118517759
43
2.3
44
84
8
125
50
13
4
32
1.60
118521605--118521697
43
2.2
44
90
3
145
52
13
5
27
1.62
118528452--118528512
31
2.0
29
84
6
77
60
1
3
34
1.23
118531344--118531761
183
2.3
183
97
0
773
48
25
7
18
1.74
118536885--118536920
14
2.6
14
86
0
54
50
0
2
47
1.15
118536886--118536931
23
2.0
23
86
0
65
45
0
2
52
1.13
118540812--118540868
17
3.6
16
83
6
71
22
1
21
54
1.54
118544670--118544728
21
2.8
22
85
7
70
69
6
0
23
1.12
118544773--118544814
17
2.4
19
80
15
54
66
0
0
33
0.92
118545193--118545229
18
2.0
20
89
10
60
56
5
5
32
1.45
118547927--118548254
179
1.8
179
80
3
392
35
20
17
27
1.94
118548920--118549447
182
2.9
183
83
6
651
41
19
13
25
1.88
118557060--118557112
21
2.5
21
84
0
70
32
35
7
24
1.84
118563901--118563962
30
2.0
30
81
9
72
48
11
1
38
1.49
118563943--118564004
22
2.7
23
71
14
56
56
4
1
37
1.30
118569040--118569083
21
2.1
21
86
0
61
75
0
4
20
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
118569049--118569104
21
2.7
21
86
2
69
71
0
5
23
1.06
118569352--118569420
29
2.4
30
80
7
81
39
2
0
57
1.13
118569544--118569697
80
1.9
78
82
12
188
33
9
12
44
1.74
118573345--118573507
83
1.9
84
90
5
256
22
14
12
50
1.76
118573148--118573589
187
2.3
196
83
7
528
22
15
11
50
1.76
118573428--118573716
109
2.8
105
83
5
363
22
15
11
51
1.74
118573537--118574079
187
2.8
189
78
10
557
21
15
11
51
1.75
118573641--118573803
83
1.9
84
90
5
256
22
14
12
50
1.76
118573234--118573982
296
2.6
295
94
2
1300
22
15
11
51
1.74
118573711--118574184
97
4.7
97
84
6
477
19
16
11
52
1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362