Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  331  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110494411--110494592
46
4.0
46
86
1
213
20
22
14
41
1.89
110495037--110495075
19
2.1
19
95
0
69
51
10
5
33
1.58
110495927--110495976
15
3.3
15
82
0
73
36
2
12
50
1.51
110496611--110496651
19
2.2
19
87
12
59
48
0
21
29
1.50
110496599--110496649
13
4.1
13
81
18
56
49
0
23
27
1.51
110499224--110499256
11
3.1
11
82
8
50
9
30
0
60
1.27
110499645--110499692
11
4.2
11
79
10
51
62
2
0
35
1.07
110501357--110501387
15
2.1
15
93
0
53
83
0
16
0
0.64
110516242--110516274
16
2.0
17
88
5
50
45
9
3
42
1.51
110523612--110523888
152
1.8
151
88
2
430
42
8
30
18
1.79
110524152--110524216
33
2.0
33
96
0
121
27
10
9
52
1.67
110525530--110525582
24
2.2
25
77
16
58
52
0
0
47
1.00
110525510--110525569
24
2.5
25
81
10
63
48
1
0
50
1.11
110525559--110525617
31
1.9
30
89
3
91
59
1
0
38
1.08
110526457--110526512
18
3.1
18
87
7
69
53
7
0
39
1.28
110526512--110526604
31
3.1
30
76
7
91
56
1
2
39
1.18
110526556--110526603
20
2.3
20
92
3
78
58
0
2
39
1.10
110526565--110526607
20
2.2
20
100
0
86
55
0
0
44
0.99
110527041--110527119
23
3.4
23
74
19
83
36
0
2
60
1.10
110527043--110527114
25
2.9
26
74
19
82
36
0
2
61
1.11
110527064--110527130
10
6.5
10
71
19
57
34
0
1
64
1.03
110537633--110537681
25
1.9
26
84
12
66
57
4
2
36
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110537710--110537752
19
2.3
18
80
11
50
60
0
0
39
0.97
110538314--110538346
11
2.9
12
86
13
52
33
0
0
66
0.92
110538469--110538532
30
2.1
31
85
8
87
57
9
4
28
1.50
110538569--110538609
11
3.7
11
86
0
64
53
9
17
19
1.70
110539000--110539042
22
2.0
22
86
4
61
48
0
2
48
1.14
110539683--110539715
17
1.9
17
88
11
50
66
3
24
6
1.28
110542615--110542640
7
3.7
7
100
0
52
0
30
0
69
0.89
110551018--110551096
26
3.1
27
83
7
94
18
25
18
36
1.94
110554054--110554123
26
2.8
26
85
10
85
18
22
22
35
1.95
110554914--110554990
25
3.2
25
83
5
88
40
16
19
23
1.91
110559023--110559058
14
2.6
14
95
0
63
0
25
0
75
0.81
110563072--110563121
19
2.4
21
77
16
59
32
14
0
54
1.40
110566867--110566911
22
2.1
21
83
4
54
37
0
8
53
1.32
110566983--110567048
33
1.9
35
81
6
82
39
3
3
54
1.31
110567784--110567827
23
1.9
23
86
9
63
54
0
15
29
1.42
110574567--110574668
26
3.9
26
94
0
168
37
24
5
32
1.80
110580384--110580493
26
4.2
26
93
4
168
35
23
5
35
1.78
110580937--110581001
21
3.2
21
73
20
75
40
23
26
10
1.87
110580920--110581019
39
2.6
39
93
0
164
37
24
26
13
1.91
110580958--110581021
18
3.4
18
75
12
65
35
25
26
12
1.91
110581072--110581113
20
2.1
20
100
0
84
47
19
19
14
1.82
110581817--110581867
25
2.0
25
100
0
102
41
23
0
35
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110582130--110582168
20
2.0
20
100
0
78
30
20
15
33
1.94
110582606--110582644
15
2.6
15
95
0
69
33
20
20
25
1.97
110584603--110584657
21
2.8
20
80
5
58
21
40
23
14
1.90
110584540--110584796
141
1.8
141
91
0
424
20
28
24
26
1.99
110588890--110589156
104
2.6
104
92
2
455
18
20
30
29
1.97
110602099--110602327
99
2.2
105
87
9
332
32
31
18
17
1.94
110625887--110625951
26
2.4
27
82
12
73
49
4
3
43
1.39
110628178--110628208
14
2.2
14
94
0
53
48
12
0
38
1.42
110631145--110631185
21
2.0
21
90
4
66
14
2
12
70
1.26
110634361--110634394
18
1.9
18
88
5
52
29
0
5
64
1.17
110636399--110636439
18
2.2
19
86
4
57
4
12
7
75
1.16
110637190--110637326
26
5.5
24
78
12
107
29
7
2
60
1.36
110637183--110637382
50
3.9
50
80
9
190
31
6
2
60
1.34
110637212--110637562
26
13.3
26
72
12
216
29
6
2
60
1.37
110637304--110637360
16
3.7
16
72
15
57
33
1
0
64
1.04
110637212--110637562
80
4.4
80
72
13
226
29
6
2
60
1.37
110637449--110637561
53
2.2
51
85
6
147
26
6
3
63
1.34
110647451--110647486
2
18.5
2
94
5
65
50
0
0
50
1.00
110647451--110647483
17
1.9
17
100
0
66
51
0
0
48
1.00
110655024--110655069
16
2.8
16
84
15
67
54
0
0
45
0.99
110657216--110657259
19
2.2
20
84
8
54
50
0
29
20
1.49
110657183--110657274
47
1.9
49
85
12
129
46
0
31
21
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110657214--110657261
20
2.3
21
75
13
55
50
0
31
18
1.48
110660041--110660222
46
4.0
46
89
1
249
42
14
21
21
1.88
110662758--110662988
35
6.6
35
84
2
295
32
25
12
30
1.92
110663711--110663756
5
9.4
5
95
4
85
41
0
0
58
0.98
110665026--110665082
15
3.9
15
88
2
89
35
0
12
52
1.39
110665454--110665519
23
3.0
23
84
6
100
15
18
24
42
1.88
110670648--110670799
47
3.2
47
80
5
155
30
27
15
25
1.96
110670719--110670978
53
5.0
51
84
6
253
31
27
15
25
1.96
110670766--110670978
53
4.0
53
88
2
304
30
28
15
25
1.96
110670766--110670978
107
2.0
104
87
4
302
30
28
15
25
1.96
110672717--110672770
20
2.6
21
82
11
67
37
0
5
57
1.22
110672760--110672787
11
2.5
11
100
0
56
28
0
0
71
0.86
110676602--110676762
84
1.9
83
96
1
295
28
19
11
40
1.87
110678049--110678087
19
2.1
19
95
0
69
48
15
2
33
1.58
110678900--110678995
48
2.0
48
91
4
158
34
14
14
36
1.87
110686316--110686831
150
3.5
150
91
2
794
29
6
6
57
1.51
110686869--110686942
16
4.6
16
72
9
69
21
5
2
70
1.20
110687290--110687322
12
2.7
12
95
4
57
0
24
0
75
0.80
110687292--110687336
17
2.7
18
83
10
60
0
31
0
68
0.89
110687573--110687623
22
2.3
23
75
18
54
27
9
9
52
1.65
110690194--110690370
3
59.7
3
74
4
135
28
7
2
61
1.36
110690227--110690376
51
3.0
51
92
1
241
28
8
2
61
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110690453--110690528
26
2.9
26
72
16
66
22
7
1
68
1.23
110693775--110693835
29
2.1
28
81
3
68
49
6
3
40
1.45
110699379--110699510
71
1.9
71
83
0
174
30
11
8
50
1.68
110699502--110699548
18
2.6
18
80
6
60
25
2
2
70
1.10
110707105--110707143
20
2.0
20
100
0
78
56
20
7
15
1.63
110711020--110711050
15
2.1
15
93
0
53
67
0
32
0
0.91
110711333--110711401
27
2.6
26
88
4
102
18
17
33
30
1.94
110711690--110711727
19
2.0
20
89
5
60
39
0
5
55
1.23
110714635--110714800
62
2.7
62
91
0
260
36
5
8
50
1.56
110716024--110716050
14
1.9
14
100
0
54
37
3
22
37
1.72
110716025--110716058
14
2.4
14
90
0
50
44
2
17
35
1.64
110722324--110722494
3
56.0
3
75
9
132
30
4
2
62
1.28
110723244--110723727
131
3.7
132
76
7
364
34
19
18
27
1.95
110723388--110723744
130
2.7
131
78
5
368
33
18
18
29
1.95
110724634--110724675
21
1.9
21
90
9
66
64
14
4
16
1.45
110728160--110728212
27
2.0
27
96
0
97
16
49
15
18
1.80
110732139--110732181
22
1.9
23
90
4
70
37
2
0
60
1.10
110734041--110734150
26
4.2
26
91
2
168
36
5
22
35
1.78
110735764--110735884
27
4.4
27
86
1
161
19
23
22
34
1.96
110735764--110735903
54
2.6
55
88
2
194
19
23
21
35
1.96
110735764--110735903
27
5.2
28
84
7
139
19
23
21
35
1.96
110741176--110741284
26
4.2
26
95
1
184
33
4
24
36
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110742901--110743013
27
4.2
27
85
3
129
16
23
23
36
1.94
110742899--110743013
54
2.1
54
88
3
169
16
23
23
36
1.94
110757024--110757134
38
3.0
37
72
18
97
38
1
2
56
1.24
110757084--110757140
20
2.8
20
82
15
71
42
1
1
54
1.21
110757075--110757123
25
1.9
26
83
4
64
38
2
0
59
1.09
110757395--110757432
13
2.8
14
84
4
51
76
0
7
15
1.01
110758489--110758513
12
2.1
12
100
0
50
16
24
20
40
1.91
110758491--110758596
45
2.4
45
84
7
128
20
16
19
42
1.89
110759632--110759886
55
4.8
54
79
9
260
36
17
24
21
1.94
110759639--110759839
108
1.8
110
89
4
318
34
17
24
22
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362