genome.fa.s8.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  128  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42238745--42238787	22	2.0	22	86	9	61	69	6	2	20	1.23
42239695--42239751	11	5.5	10	73	22	55	77	0	17	5	0.95
42239695--42239751	5	11.0	5	75	20	55	77	0	17	5	0.95
42239695--42239749	16	3.5	16	87	9	78	78	0	16	5	0.93
42239825--42239874	24	2.1	24	84	0	64	56	0	26	18	1.42
42239880--42239918	18	2.1	19	85	4	53	66	2	23	7	1.30
42243859--42243923	26	2.5	26	80	10	69	29	15	24	30	1.96
42247219--42247404	91	2.0	91	93	0	318	31	11	30	26	1.91
42249167--42249267	27	3.7	28	85	5	127	40	21	17	19	1.91
42249318--42249367	23	2.2	24	82	13	61	26	14	22	38	1.91
42249629--42249684	18	3.1	18	76	19	71	23	19	19	37	1.94
42250450--42250659	106	2.0	105	87	2	305	46	10	21	21	1.81
42251511--42251653	70	2.0	70	84	0	187	25	25	21	27	1.99
42251517--42251675	70	2.3	70	83	0	174	25	22	21	30	1.99
42258466--42258541	22	3.3	22	66	28	59	35	13	27	23	1.92
42258067--42258544	47	10.2	47	90	0	650	34	11	28	26	1.91
42260053--42260316	46	5.7	46	81	8	259	23	30	19	27	1.98
42260053--42260310	140	1.8	140	85	6	362	22	30	19	27	1.98
42263542--42263758	47	4.6	47	75	8	167	24	29	17	29	1.97
42263546--42263807	46	5.6	47	75	11	186	23	29	17	29	1.97
42263633--42263806	94	1.9	92	82	7	217	21	28	19	30	1.98
42263554--42263807	140	1.8	140	84	5	352	23	28	18	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42266215--42266325	39	2.9	38	73	15	100	30	22	18	27	1.98
42287687--42287711	8	3.1	8	100	0	50	40	0	24	36	1.55
42289801--42289839	16	2.4	17	87	12	64	48	5	25	20	1.70
42290055--42290179	29	4.3	29	90	2	189	25	15	29	29	1.96
42293132--42293159	13	2.2	13	100	0	56	71	0	14	14	1.15
42297395--42297419	10	2.5	10	100	0	50	20	0	8	72	1.10
42297459--42297636	51	3.5	50	87	4	241	27	15	28	28	1.96
42297871--42297898	14	2.0	14	100	0	56	42	14	14	28	1.84
42305131--42305171	19	2.1	20	82	13	50	63	7	24	4	1.40
42306397--42306433	16	2.2	18	80	14	51	21	0	2	75	0.92
42306398--42306452	24	2.4	22	85	11	67	20	3	1	74	1.06
42311887--42311912	13	2.0	13	100	0	52	15	30	38	15	1.88
42319406--42319517	55	2.0	55	96	0	206	40	13	14	32	1.84
42323026--42323174	40	3.7	40	83	3	192	33	20	21	24	1.97
42323117--42323239	65	1.9	64	89	1	192	30	19	23	26	1.98
42323186--42323295	39	2.8	40	84	4	134	31	20	22	24	1.98
42323758--42323912	7	21.9	7	74	7	80	19	0	30	49	1.53
42323754--42323955	14	14.2	14	70	12	63	19	0	34	45	1.55
42326604--42327122	23	22.7	23	78	9	474	33	5	22	38	1.77
42326594--42327116	137	3.8	136	76	10	467	33	5	23	37	1.78
42326623--42327122	206	2.4	206	94	1	869	32	5	23	38	1.78
42327823--42328093	43	6.4	43	79	5	273	22	13	30	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42327823--42328090	85	3.2	84	84	4	340	22	13	30	33	1.93
42327823--42328092	128	2.1	127	80	3	292	22	13	30	33	1.93
42332825--42332862	16	2.5	16	87	8	53	18	0	2	78	0.86
42332825--42332862	5	7.6	5	82	11	51	18	0	2	78	0.86
42337240--42337278	16	2.5	15	91	4	60	17	0	5	76	0.96
42337240--42337278	5	7.6	5	88	5	60	17	0	5	76	0.96
42337584--42337622	19	2.1	19	95	0	69	12	20	12	53	1.71
42338940--42339157	46	4.7	47	80	11	209	28	18	28	23	1.98
42338988--42339157	93	1.8	94	83	6	229	28	18	28	24	1.98
42338886--42339155	47	5.8	47	75	13	222	29	18	28	23	1.98
42338888--42339157	140	1.9	141	87	3	393	29	18	28	23	1.98
42343610--42343785	46	3.8	45	76	10	185	21	19	29	30	1.97
42343606--42343777	93	1.8	93	91	0	281	20	19	30	29	1.97
42346643--42346710	15	4.5	15	83	0	82	11	17	13	57	1.65
42346633--42346720	30	3.0	30	80	11	92	11	17	15	55	1.68
42349662--42349836	46	3.8	46	78	14	207	20	20	29	29	1.98
42349659--42349829	92	1.8	93	94	1	308	21	21	29	28	1.98
42351563--42351593	15	2.1	15	100	0	62	25	35	19	19	1.95
42356738--42356775	18	2.2	18	90	4	60	57	0	2	39	1.12
42357512--42357573	30	2.1	30	87	0	88	27	1	11	59	1.41
42357910--42357952	22	2.0	22	81	9	52	58	9	13	18	1.62
42360343--42360450	46	2.3	46	82	9	130	21	31	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42624927--42625141	40	5.4	39	87	3	234	27	27	20	23	1.99
42633048--42633227	40	4.5	40	83	3	202	28	26	21	23	1.99
42636475--42636515	20	2.0	20	95	0	73	39	7	17	36	1.77
42639838--42639901	25	2.6	25	82	0	74	42	12	6	39	1.68
42640080--42640133	22	2.4	23	90	3	83	31	22	29	16	1.96
42640099--42640143	23	2.0	23	82	8	56	37	22	22	17	1.94
42641715--42641783	24	2.7	26	86	4	88	26	23	17	33	1.96
42650640--42650670	3	10.3	3	100	0	62	35	0	0	64	0.94
42659765--42659849	43	2.0	43	100	0	170	40	30	9	20	1.84
42669344--42669397	20	2.8	20	71	2	56	64	1	0	33	1.04
42678314--42678425	43	2.7	43	81	2	138	31	14	23	31	1.94
42680606--42680656	23	2.3	23	93	3	86	19	23	25	31	1.98
42694306--42694572	98	2.7	100	83	6	327	28	27	17	26	1.98
42694347--42694572	49	4.6	50	85	4	300	28	27	18	25	1.98
42703769--42703827	29	2.0	29	100	0	118	33	6	3	55	1.43
42703769--42703818	16	3.3	16	72	16	61	34	6	4	56	1.43
42706729--42706946	40	5.5	40	90	1	314	23	22	27	26	2.00
42710564--42710693	42	3.1	41	70	14	111	30	25	17	26	1.97
42710557--42710874	48	6.9	48	73	13	227	27	27	19	26	1.99
42710649--42710867	96	2.3	96	83	6	257	26	28	18	26	1.98
42722989--42723025	18	2.0	19	94	5	67	54	5	10	29	1.57
42724074--42724179	27	3.9	28	78	9	103	39	18	21	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42725603--42725649	24	2.0	24	91	0	76	23	38	2	36	1.67
42732758--42733012	55	4.8	53	76	6	214	36	16	25	22	1.94
42732765--42732965	108	1.8	110	86	2	289	34	16	24	24	1.95
42739713--42739896	40	4.6	40	82	6	196	23	20	27	28	1.99
42739713--42739893	80	2.3	81	83	9	221	23	20	27	27	1.99
42739794--42739943	40	3.8	38	80	10	131	25	22	28	24	1.99
42747526--42747705	39	4.6	39	81	11	183	23	21	27	27	1.99
42747605--42747752	39	3.8	38	82	7	145	25	22	28	24	1.99
42747526--42747742	78	2.8	77	79	5	222	24	21	27	26	1.99
42763282--42763306	2	12.5	2	100	0	50	0	52	0	48	1.00
42763849--42763965	55	2.1	55	81	6	130	21	23	29	26	1.99
42784491--42784637	70	2.1	70	88	1	215	34	12	15	37	1.85
42785019--42785169	43	3.5	42	72	9	135	23	20	25	29	1.99
42797638--42797894	40	6.5	40	91	3	387	24	22	27	25	2.00
42797634--42797894	119	2.2	119	89	4	393	25	22	27	25	2.00
42801467--42801500	17	2.0	17	100	0	68	41	11	17	29	1.85
42802171--42802233	20	3.2	20	72	17	58	47	20	23	7	1.76
42810824--42810874	20	2.7	18	82	14	59	37	21	0	41	1.54
42811068--42811092	13	1.9	13	100	0	50	56	16	12	16	1.68
42817308--42817341	12	2.8	12	100	0	68	32	17	0	50	1.47
42820130--42820162	17	1.9	17	93	0	57	21	36	0	42	1.53
42822687--42822741	27	2.1	26	96	3	101	16	25	18	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42824987--42825131	40	3.6	40	85	4	193	25	24	26	23	2.00
42832989--42833132	40	3.6	39	85	5	180	25	24	26	23	2.00
42837842--42838049	40	5.2	40	86	3	125	25	27	23	23	2.00
42837865--42838049	40	4.6	41	89	3	243	24	26	23	24	2.00
42837829--42838047	80	2.7	81	81	6	241	24	26	24	24	2.00
42845918--42846125	40	5.2	40	87	3	116	25	27	23	23	2.00
42845941--42846125	40	4.6	41	89	3	252	24	26	24	24	2.00
42871923--42872145	46	4.9	46	89	0	295	18	24	14	42	1.88
42872951--42873101	51	3.0	51	96	0	275	27	22	11	39	1.88
42877817--42877864	18	2.6	18	86	6	60	85	0	4	10	0.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362