Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  324  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108372232--108372377
73
2.0
73
98
0
283
30
15
18
35
1.92
108374020--108374062
18
2.3
19
84
4
52
53
0
4
41
1.21
108375065--108375118
28
1.9
28
88
0
81
22
35
7
35
1.82
108375096--108375235
56
2.5
56
83
4
158
15
31
15
37
1.89
108382645--108382725
32
2.6
30
84
11
92
40
3
6
49
1.45
108382842--108382883
3
14.3
3
85
5
59
33
0
2
64
1.07
108391635--108391704
33
2.1
33
97
0
131
50
15
10
24
1.75
108392521--108392575
27
2.0
27
86
6
76
32
16
27
23
1.96
108394012--108394295
3
93.3
3
66
21
103
32
6
3
58
1.40
108394196--108394232
19
1.9
19
94
0
65
27
5
5
62
1.39
108394449--108394519
3
23.0
3
72
11
54
30
2
2
63
1.23
108395768--108395802
16
2.1
17
89
5
54
40
17
20
22
1.92
108403735--108403776
12
3.5
12
81
18
52
42
2
0
54
1.13
108405785--108405855
24
3.2
24
71
19
80
33
2
2
60
1.26
108409887--108409929
8
4.8
9
81
18
54
46
0
9
44
1.35
108419232--108419256
13
1.9
13
100
0
50
12
32
40
16
1.84
108422576--108422648
38
1.9
38
91
0
119
28
21
28
20
1.98
108428599--108428624
6
4.3
6
100
0
52
19
30
0
50
1.48
108429149--108429200
18
2.8
18
86
13
63
34
0
0
65
0.93
108436489--108436613
43
2.9
43
87
0
187
13
24
32
29
1.93
108436930--108437056
45
2.9
44
80
10
136
25
22
27
25
2.00
108442544--108442584
16
2.5
16
85
14
57
78
7
7
7
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108442545--108442583
15
2.4
16
87
8
53
76
7
7
7
1.15
108442749--108442798
26
1.9
26
84
8
66
64
0
36
0
0.94
108442844--108442876
16
2.0
17
88
5
50
18
3
15
63
1.43
108442873--108442931
26
2.2
27
81
3
75
42
8
8
40
1.66
108448204--108448341
72
1.9
72
90
0
222
35
19
23
21
1.96
108450744--108450802
16
3.8
16
66
8
50
22
6
5
66
1.36
108451115--108451394
135
2.1
137
84
2
357
30
8
6
55
1.56
108451889--108451936
19
2.6
18
78
15
53
0
35
0
64
0.94
108451974--108452033
10
6.1
10
72
18
54
1
28
0
70
0.97
108452208--108452245
17
2.3
16
90
4
58
5
5
5
84
0.88
108452625--108452672
25
1.9
25
91
8
80
37
20
0
41
1.53
108452625--108452680
25
2.2
25
87
6
78
39
19
1
39
1.62
108454183--108454245
31
2.0
31
100
0
126
41
12
15
30
1.85
108464512--108464670
27
5.9
27
84
5
182
33
21
25
19
1.97
108464512--108464673
54
3.0
54
91
2
247
33
21
25
19
1.97
108465065--108465095
8
3.9
8
95
0
53
6
25
25
41
1.79
108466273--108466354
26
3.2
26
94
0
137
36
23
7
32
1.82
108473100--108473412
93
3.3
94
81
7
307
21
27
20
30
1.98
108473099--108473414
47
6.7
45
74
12
226
21
27
20
30
1.98
108476236--108476273
14
2.9
13
81
11
51
57
10
13
18
1.63
108484978--108485046
34
2.0
34
97
0
129
26
21
11
40
1.87
108492048--108492113
19
3.2
21
87
6
64
34
19
9
36
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108492065--108492162
19
5.2
19
90
7
155
34
16
10
38
1.82
108492065--108492162
36
2.6
37
88
9
144
34
16
10
38
1.82
108506699--108506826
55
2.3
54
77
4
130
18
26
23
31
1.98
108516055--108516092
14
2.9
13
81
11
51
57
10
13
18
1.63
108517405--108517454
21
2.4
21
96
0
91
20
26
28
26
1.99
108540741--108540911
43
4.0
43
78
6
184
32
23
16
26
1.96
108542542--108542671
48
2.7
48
86
4
190
22
16
26
34
1.95
108545665--108545693
13
2.2
13
100
0
58
55
13
0
31
1.39
108546543--108546600
21
2.7
22
81
10
66
13
25
37
22
1.91
108549956--108550008
28
1.9
27
88
3
79
56
13
5
24
1.58
108553130--108553175
19
2.4
19
92
0
74
30
17
26
26
1.97
108558118--108558163
22
2.1
22
100
0
92
28
13
39
19
1.89
108567980--108568151
93
1.8
93
92
0
290
27
29
20
21
1.98
108567972--108568147
46
3.8
46
79
10
196
28
28
20
21
1.98
108570495--108570582
30
3.0
30
79
9
92
57
15
15
10
1.64
108570495--108570573
15
5.4
15
77
10
83
59
13
16
10
1.60
108570506--108570582
15
5.2
15
77
10
70
57
15
15
11
1.66
108573544--108573714
92
1.8
93
92
1
290
27
29
21
21
1.98
108573536--108573710
46
3.8
46
78
11
196
28
29
20
21
1.98
108582120--108582257
3
45.7
3
73
8
84
28
7
2
61
1.34
108582132--108582260
12
10.3
12
74
13
100
29
7
2
60
1.37
108585367--108585400
12
2.8
12
90
0
59
55
17
17
8
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108591121--108591208
45
2.0
45
84
4
115
28
12
12
46
1.78
108591984--108592301
92
3.5
90
74
9
304
31
16
22
29
1.96
108591905--108592394
181
2.7
181
88
0
701
31
17
22
29
1.96
108593786--108593921
3
45.7
3
71
7
80
28
6
2
61
1.36
108593788--108593839
11
4.7
11
88
4
70
28
3
3
63
1.30
108593825--108593926
27
4.0
26
76
10
93
28
7
1
61
1.34
108595837--108595916
23
3.4
23
70
21
76
27
6
11
55
1.59
108595827--108595920
47
2.0
47
100
0
188
27
6
14
51
1.67
108596202--108596279
18
4.6
18
71
19
60
33
2
10
53
1.48
108602271--108602423
76
2.0
75
85
1
207
37
13
25
24
1.91
108609370--108609529
76
2.1
77
89
1
241
36
13
25
25
1.92
108611784--108611847
27
2.4
26
84
2
83
37
3
6
53
1.42
108619229--108619254
13
2.0
13
100
0
52
30
38
23
7
1.83
108626659--108626706
21
2.2
22
81
3
53
54
20
4
20
1.61
108627757--108627829
29
2.5
29
88
0
101
26
31
19
23
1.98
108630424--108630449
6
4.3
6
100
0
52
46
15
19
19
1.85
108636590--108636680
45
2.0
45
100
0
182
34
24
6
35
1.81
108637744--108637780
18
2.1
17
90
5
56
48
0
0
51
1.00
108645202--108645241
18
2.3
17
91
4
62
72
0
25
2
0.97
108667407--108667458
27
1.9
27
84
7
70
80
1
5
11
0.96
108667499--108667543
21
2.1
22
84
12
58
73
4
4
17
1.17
108667578--108667659
4
20.5
4
74
18
57
71
1
2
24
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108667575--108667659
32
2.8
29
75
20
84
71
1
2
24
1.04
108672866--108673049
67
2.8
64
75
8
176
29
15
30
24
1.96
108681441--108681474
17
2.0
18
88
11
54
26
5
20
47
1.73
108683645--108683822
75
2.4
75
91
3
279
25
19
21
33
1.97
108683795--108683901
40
2.7
39
83
9
135
26
23
21
28
1.99
108683720--108684060
155
2.2
154
82
6
440
27
20
21
30
1.98
108684356--108684400
14
3.2
14
81
6
56
26
0
22
51
1.49
108684362--108684429
28
2.4
29
80
7
68
27
1
22
48
1.59
108684419--108684457
7
5.6
7
90
0
60
20
0
25
53
1.45
108685045--108685094
7
6.6
8
93
4
61
76
4
0
20
0.95
108685046--108685095
23
2.3
21
86
6
64
74
4
0
22
0.99
108685046--108685078
7
4.7
7
100
0
66
75
0
0
24
0.80
108689536--108689761
23
9.9
23
82
6
212
31
4
23
40
1.74
108690000--108690046
19
2.5
19
76
10
51
21
2
4
72
1.12
108690307--108690413
43
2.5
43
89
0
160
22
19
28
28
1.98
108690459--108690504
21
2.2
21
88
0
65
54
13
19
13
1.71
108690459--108690516
22
2.7
20
79
12
62
50
15
20
13
1.78
108692595--108692637
13
3.3
13
80
6
52
48
4
2
44
1.36
108694582--108694611
14
2.1
14
100
0
60
43
13
0
43
1.43
108695746--108695777
16
2.0
16
93
0
55
53
0
6
40
1.26
108704930--108704978
8
6.5
8
81
13
68
63
0
0
36
0.95
108704924--108704994
29
2.4
30
83
6
92
61
2
4
30
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108705015--108705052
20
1.9
20
84
10
51
63
5
28
2
1.30
108709167--108709217
25
2.0
25
84
0
66
7
17
15
58
1.60
108715190--108715268
26
2.9
29
66
12
67
39
0
2
58
1.12
108733947--108733971
5
5.0
5
100
0
50
40
0
0
60
0.97
108736920--108737044
55
2.3
55
84
0
151
25
32
28
14
1.95
108736920--108737060
55
2.6
55
82
0
129
26
30
26
15
1.96
108742568--108742597
15
1.9
16
93
6
53
36
6
3
53
1.44
108747166--108747253
7
10.9
8
75
20
76
30
0
3
65
1.09
108747169--108747227
7
8.0
7
87
7
82
28
0
1
69
0.98
108747169--108747227
15
4.0
14
87
10
82
28
0
1
69
0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362