genome.fa.s8.2.7.7.80.10.50.1000.329.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  329  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109883351--109883457	26	4.2	26	92	1	180	32	6	24	36	1.81
109896511--109896550	5	8.0	5	94	0	62	60	35	0	5	1.19
109905319--109905353	18	1.9	18	94	0	61	65	2	0	31	1.07
109912028--109912087	30	2.0	30	93	0	102	58	13	3	25	1.50
109917227--109917268	13	2.9	14	80	13	50	52	0	0	47	1.00
109917231--109917267	15	2.3	17	86	13	60	56	0	0	43	0.99
109919174--109919350	24	7.2	24	88	2	237	14	24	25	35	1.94
109919174--109919387	72	2.9	72	82	6	243	15	24	24	35	1.94
109921708--109921752	22	2.1	21	83	4	54	46	4	6	42	1.50
109922070--109922287	114	1.9	113	88	0	328	28	16	24	30	1.96
109926984--109927428	87	5.1	86	65	14	237	27	23	18	30	1.97
109926781--109927450	176	3.8	176	88	2	916	26	24	17	31	1.97
109952506--109952555	24	2.1	24	92	0	82	12	34	2	52	1.50
109953403--109953441	18	2.2	18	85	0	51	23	5	12	58	1.54
109953593--109953699	40	2.7	41	82	4	139	37	20	21	20	1.95
109953766--109953957	41	4.7	41	88	4	237	18	21	27	32	1.97
109955022--109955124	21	5.0	20	70	13	59	21	0	40	36	1.60
109955054--109955090	14	2.6	14	91	0	56	24	0	40	35	1.55
109958484--109958646	43	3.8	43	89	1	229	22	16	31	29	1.96
109958482--109958646	86	1.9	86	89	0	258	22	16	30	30	1.96
109958718--109958761	22	2.0	22	90	0	70	43	25	20	11	1.85
109961687--109961751	32	2.0	32	100	0	130	40	3	24	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109964000--109964262	46	5.7	46	95	1	422	40	12	23	23	1.89
109964558--109964590	17	2.0	17	94	5	59	48	0	15	36	1.45
109966358--109966423	13	5.1	13	80	7	80	34	6	21	37	1.78
109975013--109975069	25	2.3	24	80	11	62	38	24	19	17	1.93
109975063--109975113	24	2.1	24	96	0	75	50	17	17	13	1.77
109978208--109978249	14	2.9	14	82	3	57	61	0	4	33	1.17
109981605--109981633	7	4.1	7	100	0	58	41	17	0	41	1.49
109985393--109985456	3	21.3	3	96	0	119	32	0	1	65	1.02
109985587--109985666	36	2.2	36	80	8	92	36	8	2	52	1.46
109985889--109985925	18	2.1	18	89	0	56	32	5	5	56	1.45
109985887--109985925	20	2.1	18	90	9	60	33	5	5	56	1.43
109998561--109998660	44	2.5	42	82	11	111	27	20	24	29	1.99
109998512--109998746	124	1.9	127	82	10	302	28	20	22	28	1.98
109998917--109999004	44	2.0	46	86	4	126	30	14	22	31	1.94
109998917--109999026	44	2.5	44	82	5	105	32	15	25	26	1.95
110000252--110000305	3	18.7	3	78	14	60	31	1	1	64	1.14
110000736--110000770	17	2.1	17	88	0	52	34	5	5	54	1.48
110000734--110000770	19	2.1	17	90	10	56	35	5	5	54	1.47
110001864--110001944	40	2.0	40	100	0	162	29	27	12	30	1.93
110007033--110007100	33	2.1	33	97	0	127	47	19	5	27	1.72
110012135--110012178	3	14.7	3	86	9	63	36	0	2	61	1.09
110012760--110012806	20	2.3	21	82	10	62	38	0	6	55	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110012760--110012833	22	3.5	21	74	22	57	37	2	6	52	1.42
110016469--110016519	24	2.1	25	88	3	77	60	5	7	25	1.47
110017701--110017794	43	2.2	42	88	7	138	26	19	1	53	1.52
110021224--110021281	29	2.0	29	100	0	116	34	10	20	34	1.87
110028015--110028046	3	11.3	3	87	12	50	28	0	0	71	0.86
110033673--110033710	14	2.7	14	91	0	67	36	5	10	47	1.61
110033822--110033873	21	2.6	18	77	19	50	1	30	0	67	1.02
110033983--110034040	27	2.1	27	84	6	73	17	22	37	22	1.93
110035258--110035302	19	2.3	21	75	21	53	53	0	0	46	1.00
110035252--110035299	25	1.9	25	83	8	62	52	0	0	47	1.00
110044421--110044447	14	1.9	14	100	0	54	44	0	7	48	1.31
110052639--110052866	113	2.0	113	100	0	456	32	19	14	33	1.92
110053400--110053431	12	2.7	12	95	0	55	9	31	31	28	1.88
110060397--110060443	20	2.3	20	85	10	60	61	8	4	25	1.43
110060436--110060490	24	2.3	24	83	0	74	70	1	1	25	1.06
110060496--110060526	15	2.1	15	93	0	53	58	0	3	38	1.15
110063420--110063471	3	17.3	3	95	0	95	63	0	0	36	0.95
110065346--110065393	26	1.9	24	87	8	69	41	2	2	54	1.24
110066706--110066740	18	1.9	18	88	11	54	25	2	0	71	1.00
110072275--110072342	27	2.4	28	75	12	66	44	2	0	52	1.16
110072456--110072489	9	3.8	9	88	11	52	58	0	0	41	0.98
110072456--110072489	17	1.9	18	94	5	61	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110072455--110072519	29	2.2	29	81	5	78	53	0	0	46	1.00
110074836--110074865	10	3.0	10	90	0	51	86	0	13	0	0.57
110074836--110074875	20	2.0	20	85	0	53	80	5	12	2	0.98
110079461--110079505	21	2.2	20	84	4	54	20	0	73	6	1.05
110082564--110082602	19	2.1	19	100	0	78	61	0	15	23	1.33
110084124--110084180	28	2.0	28	100	0	114	50	10	14	24	1.73
110092404--110092436	13	2.6	13	90	4	50	39	0	12	48	1.40
110096221--110096253	13	2.6	13	90	4	50	39	0	12	48	1.40
110098127--110098237	35	2.8	38	82	16	138	35	24	13	27	1.93
110098240--110098273	16	2.1	16	100	0	68	29	26	11	32	1.92
110106383--110106516	45	3.0	45	82	5	162	41	11	20	26	1.86
110107953--110108000	25	2.0	25	84	12	64	47	25	10	16	1.78
110107914--110108073	66	2.4	67	79	6	148	45	23	14	16	1.84
110120391--110120444	23	2.4	22	81	9	65	27	7	1	62	1.32
110122185--110122225	19	2.2	19	86	0	55	58	0	0	41	0.98
110123296--110123370	31	2.4	31	97	0	141	28	26	17	28	1.98
110123578--110123636	26	2.4	25	86	11	77	27	23	16	32	1.96
110123686--110123772	20	4.3	20	89	2	131	31	17	10	41	1.83
110124500--110124551	27	1.9	27	84	7	70	17	19	23	40	1.91
110124596--110124693	27	3.6	27	78	13	101	33	8	18	39	1.80
110124670--110124782	27	4.2	27	76	6	104	30	7	20	41	1.81
110124814--110124943	27	4.8	27	88	0	188	40	10	22	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110126717--110126863	42	3.1	50	65	25	147	34	2	12	50	1.55
110126750--110126893	49	3.1	49	61	19	126	31	2	11	55	1.46
110126716--110126897	90	2.0	90	100	0	364	31	2	12	53	1.50
110130581--110130805	40	5.7	40	85	5	260	25	28	22	24	2.00
110130583--110130805	119	1.9	120	82	6	283	25	27	22	24	2.00
110133404--110133442	20	2.0	19	85	5	51	35	5	0	58	1.20
110137053--110137180	20	6.3	20	69	4	69	37	20	28	14	1.91
110139041--110139077	18	2.0	19	85	15	51	32	16	8	43	1.77
110142939--110142977	18	2.1	19	90	4	62	41	0	10	48	1.37
110143217--110143327	38	2.8	40	72	5	100	23	19	27	29	1.98
110143473--110143513	19	2.2	19	87	12	59	46	0	24	29	1.53
110147987--110148036	5	10.0	5	82	8	66	42	0	2	56	1.11
110147987--110148037	19	2.5	20	72	18	52	43	0	1	54	1.11
110149352--110149390	18	2.1	19	90	4	62	41	0	10	48	1.37
110149886--110149926	19	2.2	19	87	12	59	46	0	24	29	1.53
110151533--110151585	21	2.5	21	96	0	97	22	22	3	50	1.64
110155808--110156297	89	5.5	87	78	8	426	53	11	7	27	1.63
110155808--110156301	176	2.8	173	78	11	509	53	11	7	27	1.63
110156582--110156658	33	2.3	33	93	0	127	31	24	12	31	1.93
110158023--110158247	121	1.9	120	81	8	282	60	5	4	30	1.39
110158313--110158349	12	3.0	13	84	11	51	64	8	0	27	1.21
110158440--110158521	3	27.3	3	72	24	59	64	1	2	31	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110158440--110158522	12	6.8	12	78	17	75	65	1	2	31	1.13
110158450--110158530	38	2.1	38	82	8	94	67	1	2	28	1.11
110159031--110159116	30	2.9	30	94	0	154	24	6	51	17	1.70
110159065--110159115	18	3.2	18	64	30	51	23	7	52	15	1.68
110159706--110159774	35	2.0	35	88	0	102	23	20	17	39	1.92
110159740--110160172	43	10.0	43	74	4	334	21	21	21	35	1.96
110159754--110160463	44	16.4	44	68	14	275	20	23	21	35	1.96
110159740--110160128	87	4.5	87	91	0	600	20	22	21	35	1.96
110159636--110160208	130	4.5	130	76	6	382	20	23	21	35	1.96
110160101--110160481	86	4.4	86	88	1	505	22	23	20	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362