genome.fa.s8.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  137  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45353820--45353844	12	2.1	12	100	0	50	40	32	0	28	1.57
45355228--45355322	29	3.3	29	92	0	163	33	29	11	25	1.91
45357815--45358183	27	13.6	27	75	8	277	39	19	8	31	1.83
45358168--45358253	27	3.2	27	89	0	136	37	17	17	27	1.92
45358175--45358282	27	4.0	27	87	0	135	34	20	20	25	1.96
45358487--45358556	25	2.8	25	93	4	115	24	25	22	27	2.00
45358486--45358583	25	4.0	23	79	16	99	26	23	22	27	1.99
45364207--45364384	27	6.6	27	82	3	115	29	28	14	26	1.95
45364228--45364383	82	1.9	81	86	3	224	29	28	14	26	1.95
45371835--45372012	27	6.6	27	82	3	115	29	28	15	26	1.96
45371856--45372011	82	1.9	81	88	3	233	29	28	15	26	1.96
45371835--45372011	54	3.3	54	81	6	205	29	28	15	26	1.96
45381101--45381131	15	2.1	15	100	0	62	32	12	12	41	1.81
45391930--45392015	40	2.2	39	82	2	100	24	18	27	29	1.98
45416881--45416932	10	5.1	10	84	11	61	59	3	0	36	1.16
45416890--45416922	12	2.9	12	91	8	52	60	0	0	39	0.97
45416890--45416933	22	2.0	22	95	0	79	56	2	0	40	1.11
45420853--45421026	6	28.8	6	70	18	121	47	13	17	21	1.82
45420853--45421001	24	6.2	24	75	10	144	48	13	16	21	1.80
45420924--45421026	30	3.4	30	93	1	170	47	15	17	19	1.83
45421144--45421217	27	2.8	27	80	10	80	36	18	24	20	1.95
45421382--45421440	22	2.7	22	81	0	64	32	22	25	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45421528--45421610	27	3.1	26	86	5	103	38	21	20	19	1.93
45421823--45422004	54	3.4	54	84	6	226	26	17	19	36	1.93
45421812--45422004	81	2.4	81	79	3	201	26	18	18	36	1.93
45421812--45422004	27	7.1	27	82	2	156	26	18	18	36	1.93
45422009--45422177	27	6.3	27	88	0	230	40	9	21	27	1.84
45424490--45424621	43	3.1	42	78	4	113	30	28	15	25	1.96
45425107--45425165	30	2.0	30	86	6	84	30	27	3	38	1.73
45426533--45426676	40	3.6	40	87	4	193	34	26	16	22	1.95
45433649--45433686	19	2.0	19	89	0	58	39	15	10	34	1.82
45438300--45438462	27	6.0	26	83	4	166	40	20	8	30	1.82
45438303--45438461	54	2.9	54	86	3	214	40	20	8	30	1.82
45438300--45438462	81	2.0	81	84	7	215	40	20	8	30	1.82
45443542--45443621	29	2.8	28	81	7	99	28	33	13	23	1.93
45443542--45443621	28	2.8	28	81	7	99	28	33	13	23	1.93
45443841--45443875	16	2.2	16	100	0	70	11	22	17	48	1.79
45446830--45446962	27	4.9	27	81	3	151	37	21	12	29	1.89
45446826--45446988	54	3.0	53	78	8	168	37	21	11	30	1.88
45446833--45446989	81	1.9	80	88	5	235	38	20	10	30	1.87
45449330--45449376	21	2.3	21	85	3	60	42	0	21	36	1.53
45457409--45457632	39	5.7	40	84	7	246	25	21	27	25	2.00
45457409--45457632	79	2.8	79	82	9	242	25	21	27	25	2.00
45457410--45457632	40	5.6	39	83	6	220	25	21	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45457462--45457665	79	2.6	78	81	8	200	25	20	27	25	1.99
45460569--45460793	40	5.7	40	82	6	233	25	28	21	25	1.99
45460725--45460802	40	1.9	41	82	10	97	26	28	20	24	1.99
45665460--45665642	40	4.7	40	77	13	184	25	22	26	25	2.00
45673598--45673782	40	4.6	41	82	7	213	24	22	27	24	2.00
45673651--45673815	79	2.1	79	82	6	192	26	20	27	25	1.99
45687746--45687920	46	3.8	46	78	13	205	29	29	20	20	1.98
45687753--45687924	93	1.8	93	94	0	308	28	29	20	20	1.98
45695302--45695473	93	1.8	93	94	0	308	27	29	21	21	1.99
45695295--45695470	46	3.8	46	78	12	207	28	28	21	21	1.98
45704618--45704768	41	3.7	41	80	6	173	24	21	27	26	2.00
45704618--45704753	40	3.4	39	82	10	141	23	22	27	26	1.99
45713090--45713168	41	1.9	41	92	0	131	22	21	27	27	1.99
45713090--45713190	41	2.5	41	80	6	123	22	20	29	26	1.99
45717312--45717337	11	2.4	11	100	0	52	26	0	19	53	1.45
45720991--45721166	46	3.8	46	77	12	180	22	21	27	28	1.99
45720987--45721158	93	1.8	93	89	0	272	22	22	28	27	1.99
45724092--45724171	15	5.4	15	74	12	67	8	17	13	60	1.58
45726557--45726732	46	3.8	46	80	12	216	21	20	28	29	1.98
45726553--45726724	93	1.8	93	94	0	308	20	20	29	28	1.98
45732951--45732975	6	4.2	6	100	0	50	84	0	0	16	0.63
45744602--45744747	43	3.4	43	100	0	292	22	15	35	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45744729--45744802	29	2.6	29	89	4	105	25	16	32	25	1.96
45745192--45745548	40	8.9	40	88	0	480	25	21	26	26	2.00
45745113--45745548	120	3.6	120	85	2	502	25	21	27	25	2.00
45750030--45750175	43	3.4	43	100	0	292	22	15	35	26	1.94
45750157--45750230	29	2.6	29	84	4	96	25	17	31	25	1.97
45750622--45750974	40	8.9	40	88	0	483	25	21	27	25	2.00
45757454--45757583	71	1.9	70	84	7	176	20	30	16	33	1.94
45757452--45757609	68	2.3	70	80	7	171	20	27	15	35	1.94
45772468--45772618	40	3.8	40	91	2	225	21	29	25	23	1.99
45793592--45793636	23	2.0	23	100	0	90	24	22	13	40	1.90
45796740--45796800	27	2.3	27	85	5	79	40	19	21	18	1.91
45796757--45796814	27	2.1	28	84	9	75	34	25	22	17	1.96
45800739--45800849	27	4.1	26	81	7	123	36	20	23	18	1.95
45800739--45800849	54	2.1	54	84	3	143	36	20	23	18	1.95
45804917--45805094	27	6.6	27	81	5	180	28	28	16	26	1.97
45804938--45805093	82	1.9	81	86	3	224	28	28	16	26	1.97
45813018--45813193	27	6.5	27	81	4	176	28	28	16	26	1.97
45813018--45813194	55	3.3	53	83	4	212	28	28	16	26	1.97
45813038--45813193	82	1.9	81	86	3	224	28	28	16	26	1.97
45820468--45820570	40	2.6	40	90	0	152	27	24	17	31	1.97
45821953--45822178	49	4.6	49	80	5	265	30	27	17	24	1.97
45821954--45822183	100	2.3	100	90	3	349	30	27	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45822833--45822892	30	2.0	30	87	6	86	28	25	8	38	1.84
45828729--45828769	20	2.0	20	85	9	55	46	17	7	29	1.74
45831249--45831321	32	2.3	32	86	6	96	64	2	4	28	1.26
45832897--45833100	80	2.6	80	82	1	241	25	26	17	30	1.97
45833121--45833375	132	1.9	132	89	3	397	29	24	14	31	1.94
45833077--45833378	44	6.9	44	84	4	360	28	24	14	32	1.95
45845170--45845221	22	2.4	21	81	6	59	65	5	3	25	1.32
45845476--45845548	32	2.3	32	83	6	87	64	2	5	27	1.29
45846963--45846995	17	1.9	17	93	0	57	18	6	6	69	1.30
45854554--45854677	39	3.2	39	87	0	167	27	28	20	24	1.99
45861667--45861916	40	6.3	40	85	5	319	28	28	20	23	1.99
45868525--45868670	40	3.6	40	96	0	256	22	23	28	26	1.99
45876474--45876616	40	3.6	40	95	0	250	23	24	27	24	2.00
45876876--45876919	22	2.0	21	83	16	54	31	18	13	36	1.90
45878052--45878089	19	2.0	20	85	15	53	36	0	23	39	1.55
45885687--45885725	19	2.1	19	100	0	78	25	5	15	53	1.62
45895250--45895307	30	1.9	30	85	0	80	31	22	8	37	1.84
45899565--45899625	30	2.0	30	83	0	77	31	22	8	37	1.84
45903288--45903381	40	2.3	40	94	0	161	26	27	18	27	1.98
45914937--45914990	27	2.0	26	82	3	63	44	14	7	33	1.73
45918095--45918170	36	2.2	33	82	13	91	3	26	1	68	1.15
45921396--45921619	40	5.6	40	86	8	303	25	26	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45921396--45921619	83	2.8	80	87	6	310	25	26	23	24	2.00
45925790--45925816	6	4.5	6	100	0	54	85	0	14	0	0.61
45932287--45932451	78	2.1	78	85	2	224	19	22	27	30	1.98
45932288--45932431	39	3.7	39	90	0	225	19	22	29	28	1.98
45939480--45939559	25	3.2	25	81	0	97	27	23	25	23	2.00
45953454--45953658	27	7.6	27	83	7	227	27	14	28	30	1.95
45957411--45957471	30	2.0	30	83	0	77	31	22	8	37	1.84
45959424--45959645	40	5.6	40	88	2	315	27	26	22	23	2.00
45964323--45964452	43	3.0	43	79	8	113	28	26	17	26	1.98
45975846--45976016	93	1.8	93	91	2	281	29	28	21	21	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362