genome.fa.s8.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  168  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55319785--55319929	40	3.7	39	90	7	224	22	23	27	26	2.00
55319785--55319929	77	1.9	78	91	4	240	22	23	27	26	2.00
55319902--55319953	27	1.9	27	96	0	95	21	26	30	21	1.98
55319863--55319986	66	1.9	65	86	6	178	23	24	29	22	1.99
55327803--55328020	40	5.5	40	90	4	284	22	22	28	26	1.99
55330999--55331149	43	3.5	43	74	13	141	24	17	27	31	1.97
55330982--55331133	43	3.5	42	77	15	143	23	15	26	34	1.95
55330999--55331133	42	3.1	43	80	11	127	25	17	25	31	1.97
55335110--55335134	13	1.9	13	100	0	50	12	32	40	16	1.84
55345626--55346004	38	9.0	38	71	18	218	31	23	15	29	1.95
55345633--55345924	85	3.4	85	92	0	487	30	23	15	29	1.96
55345841--55345969	48	2.7	48	90	1	197	33	24	13	29	1.93
55345756--55346001	133	1.9	132	87	2	368	32	23	14	29	1.94
55346702--55347004	27	11.3	27	83	2	306	31	8	20	39	1.83
55346773--55347020	133	1.9	133	84	1	336	33	8	19	39	1.81
55354146--55354212	24	2.8	24	77	8	57	64	0	35	0	0.94
55354130--55354228	30	3.2	30	80	12	94	65	0	32	2	1.04
55359548--55359574	11	2.5	11	100	0	54	37	22	25	14	1.93
55365741--55365785	15	3.0	15	78	12	56	57	17	15	8	1.63
55378820--55378887	33	2.1	33	100	0	136	25	29	20	25	1.99
55382505--55382656	27	5.6	27	93	3	241	26	13	28	30	1.94
55382505--55382656	55	2.8	55	94	0	259	26	13	28	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55390337--55390488	27	5.6	27	93	3	241	26	13	28	30	1.94
55390337--55390488	55	2.8	55	94	0	259	26	13	28	30	1.94
55397473--55397641	27	6.3	27	82	5	207	34	18	20	25	1.96
55397471--55397642	81	2.1	81	84	6	231	36	18	20	25	1.95
55397886--55398151	100	2.7	99	92	2	437	19	25	20	34	1.96
55398254--55398363	6	17.8	6	69	15	73	18	17	14	50	1.79
55398257--55398320	25	2.6	25	87	0	92	17	18	15	48	1.81
55398254--55398363	31	3.5	31	72	14	100	18	17	14	50	1.79
55412346--55412375	15	2.1	15	93	6	53	36	26	6	30	1.82
55429224--55429253	15	2.1	15	93	6	53	36	26	6	30	1.82
55432965--55433011	24	1.9	25	86	4	69	25	4	21	48	1.68
55433607--55433731	45	2.8	45	88	2	162	24	14	26	34	1.94
55433644--55433742	45	2.2	45	87	5	139	26	16	24	33	1.96
55436026--55436085	30	2.0	30	86	0	84	56	15	1	26	1.48
55449288--55449463	46	3.8	45	73	11	160	22	21	27	28	1.99
55449284--55449455	93	1.8	93	90	2	274	22	22	28	27	1.99
55452143--55452278	46	3.0	46	88	0	200	27	28	8	36	1.85
55452252--55452584	47	7.1	47	95	0	558	25	30	12	31	1.92
55452505--55452582	24	3.2	25	63	17	65	29	29	10	30	1.90
55456590--55456942	40	8.8	40	88	0	499	24	28	23	24	2.00
55458432--55458568	46	3.0	46	85	0	184	26	30	8	34	1.87
55458542--55458733	47	4.1	47	93	0	294	27	30	10	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55458654--55458731	25	3.2	25	70	23	85	32	32	8	26	1.87
55462082--55462148	15	4.5	15	84	0	71	11	19	13	55	1.69
55464538--55464713	46	3.8	45	76	10	167	22	21	28	27	1.99
55464534--55464705	93	1.8	93	88	0	263	22	21	29	26	1.99
55467642--55467708	15	4.5	15	84	0	71	11	19	13	55	1.69
55467631--55467718	30	3.0	30	78	8	90	10	18	15	55	1.68
55471346--55471386	18	2.3	19	87	8	59	21	21	9	46	1.80
55484301--55484530	55	4.3	53	80	9	240	36	15	24	23	1.94
55484308--55484510	108	1.9	110	86	4	295	34	16	25	24	1.95
55484748--55484778	16	1.9	16	93	0	53	41	0	22	35	1.54
55490911--55491066	43	3.6	42	81	4	134	31	23	16	28	1.96
55491197--55491266	35	2.0	35	83	5	88	48	12	5	32	1.65
55493785--55493868	25	3.4	24	82	9	80	25	21	22	30	1.98
55493998--55494046	25	2.0	25	91	0	80	28	14	22	34	1.93
55501527--55501734	31	6.7	31	91	0	310	23	25	15	36	1.93
55501941--55502024	25	3.4	24	83	9	71	25	21	23	29	1.99
55501966--55502049	25	3.4	25	91	0	123	23	23	22	29	1.99
55502099--55502143	11	4.4	11	78	13	51	33	17	13	35	1.89
55502180--55502228	25	2.0	25	83	0	62	28	18	20	32	1.96
55503858--55503901	19	2.3	19	84	4	52	54	15	0	29	1.42
55514212--55514319	54	2.0	54	96	0	198	28	26	8	36	1.86
55524333--55524508	46	3.8	46	77	15	175	21	18	28	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55524329--55524500	93	1.8	93	88	4	267	22	19	28	30	1.98
55530550--55530608	30	2.0	30	82	0	73	44	6	18	30	1.76
55532796--55532891	40	2.4	40	87	0	138	30	22	15	31	1.95
55539371--55540529	47	25.1	47	94	3	1962	31	8	30	29	1.87
55539371--55540529	232	5.0	232	93	3	1923	31	8	30	29	1.87
55539782--55539854	22	3.3	22	64	17	60	28	10	31	28	1.91
55540216--55540487	86	3.1	86	91	4	418	32	8	29	29	1.87
55540648--55540726	37	2.1	37	90	0	122	24	18	31	25	1.98
55542576--55542678	43	2.4	43	100	0	206	22	15	35	26	1.94
55542660--55542733	29	2.6	29	89	4	105	25	16	32	25	1.96
55543043--55543199	40	3.9	40	78	7	140	26	22	26	24	2.00
55546593--55547379	47	16.8	47	96	0	1351	31	9	30	28	1.88
55547517--55547587	37	1.9	37	85	0	97	19	19	33	26	1.96
55554091--55554154	20	3.2	20	95	0	110	34	34	14	17	1.89
55565030--55565088	30	2.0	30	89	0	91	38	6	27	27	1.81
55565846--55566082	50	4.7	50	73	4	208	27	18	26	27	1.98
55565825--55566125	150	2.0	150	81	3	347	27	19	25	26	1.99
55575622--55575834	56	3.8	56	88	2	318	29	15	22	32	1.95
55578829--55578907	37	2.1	37	90	0	122	25	31	18	24	1.98
55579026--55579492	46	10.1	47	92	3	750	28	30	8	31	1.88
55579026--55579492	93	5.0	94	92	3	750	28	30	8	31	1.88
55582876--55582981	40	2.6	40	79	8	108	23	24	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55583324--55583402	29	2.7	29	86	5	106	27	32	15	24	1.95
55583384--55583529	43	3.4	43	94	0	256	26	33	15	24	1.95
55585382--55585460	37	2.1	37	90	0	122	25	31	18	24	1.98
55585579--55585774	47	4.2	47	88	1	277	27	30	9	32	1.89
55585579--55585774	93	2.1	94	87	0	277	27	30	9	32	1.89
55590633--55590660	13	2.2	13	100	0	56	28	0	14	57	1.38
55592081--55592282	40	5.1	40	87	4	293	23	19	27	29	1.98
55594361--55594427	27	2.5	27	82	4	82	22	25	17	34	1.96
55595387--55595519	27	4.9	27	84	0	158	37	17	17	27	1.92
55595506--55595630	27	4.6	27	82	0	142	41	18	9	30	1.82
55595582--55595654	27	2.7	27	82	0	83	38	20	12	28	1.89
55595717--55595808	27	3.4	27	87	0	130	34	20	23	20	1.96
55595949--55596044	27	3.6	26	78	5	93	20	22	20	35	1.96
55596185--55596249	33	2.0	33	93	0	112	26	20	21	32	1.97
55596195--55596264	33	2.1	33	83	0	86	28	21	21	28	1.99
55602297--55602381	34	2.5	34	84	5	102	29	22	22	25	1.99
55608028--55608116	27	3.3	27	80	0	88	28	14	17	39	1.89
55608068--55608503	27	16.4	27	80	11	415	31	11	19	37	1.87
55608070--55608502	54	8.2	53	81	9	465	31	11	19	37	1.87
55610576--55610654	34	2.6	28	75	21	86	25	10	21	43	1.84
55610591--55610672	34	2.4	34	97	0	155	25	10	23	40	1.87
55613680--55613753	31	2.4	31	90	4	114	16	29	35	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55615443--55615623	67	2.7	68	77	10	160	31	14	29	24	1.94
55615467--55615649	67	2.8	64	77	7	190	28	14	31	25	1.94
55623801--55623908	27	4.0	26	73	14	85	16	22	20	40	1.91
55623798--55623909	54	2.1	54	83	6	138	16	22	21	40	1.91
55627091--55627135	15	3.0	15	81	9	56	15	13	17	53	1.73
55627985--55628011	3	9.0	3	100	0	54	66	0	0	33	0.92
55634002--55634029	13	2.2	13	100	0	56	28	0	14	57	1.38
55635445--55635690	40	6.2	40	87	1	352	24	21	26	28	1.99
55642197--55642224	13	2.2	13	100	0	56	28	0	14	57	1.38
55643632--55643757	40	3.2	40	87	1	182	23	23	26	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362