Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  353  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116782922--116782973
26
2.1
24
82
13
61
17
15
13
53
1.72
116786523--116786569
23
2.0
23
95
0
85
38
29
14
17
1.89
116788980--116789042
30
2.1
30
96
0
117
26
3
12
57
1.51
116790355--116790705
121
2.9
120
90
2
533
31
14
19
33
1.92
116794807--116794858
24
2.2
24
89
0
77
55
9
1
32
1.43
116796777--116796828
24
2.2
24
89
0
77
55
9
1
32
1.43
116803103--116803132
15
1.9
16
93
6
53
30
6
0
63
1.20
116803863--116803903
19
2.1
20
90
4
66
7
12
4
75
1.16
116805937--116805972
3
12.0
3
100
0
72
33
0
0
66
0.92
116808056--116808117
25
2.3
27
75
13
65
38
0
1
59
1.07
116812026--116812094
31
2.2
32
86
2
95
55
10
0
34
1.34
116820506--116820540
17
2.1
17
100
0
70
34
11
17
37
1.85
116830595--116830641
24
2.0
24
95
4
87
48
17
8
25
1.74
116831620--116831825
102
2.0
102
97
0
385
37
14
18
29
1.90
116836372--116836411
20
2.0
20
100
0
80
60
5
5
30
1.40
116850633--116850690
30
1.9
31
85
3
82
43
15
1
39
1.57
116851339--116851385
18
2.7
17
81
12
51
6
8
8
76
1.15
116851486--116851685
63
3.2
63
97
0
373
37
6
19
37
1.77
116855113--116855226
61
1.9
61
88
1
176
57
3
4
35
1.36
116857126--116857169
18
2.4
18
81
7
54
68
0
0
31
0.90
116857131--116857199
32
2.1
33
84
7
88
65
0
1
33
1.02
116857122--116857193
29
2.5
30
75
16
71
66
0
0
33
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116860816--116860848
17
2.0
17
94
5
59
36
15
0
48
1.45
116861134--116861498
46
7.9
46
90
1
491
22
23
13
40
1.90
116871623--116871652
14
2.1
14
93
0
51
3
26
0
70
1.03
116871953--116872011
3
19.7
3
89
0
91
0
33
5
61
1.18
116875384--116875412
6
4.8
6
100
0
58
48
17
17
17
1.82
116876276--116876319
20
2.4
18
88
11
63
0
34
0
65
0.93
116878226--116878281
18
2.9
19
81
10
69
58
1
5
33
1.31
116878209--116878390
10
19.1
9
68
21
88
61
1
3
33
1.22
116878266--116878338
27
2.7
26
83
10
83
65
1
1
31
1.09
116882429--116882641
46
4.6
46
86
1
275
42
14
23
20
1.88
116886749--116886897
31
4.8
31
93
0
253
26
19
27
26
1.99
116886922--116887086
47
3.7
46
84
6
160
29
15
26
28
1.96
116887016--116887130
42
2.7
43
87
4
162
30
14
27
26
1.95
116889219--116889254
14
2.5
14
86
4
54
77
5
8
8
1.11
116893944--116893985
22
2.0
22
86
9
61
28
9
2
59
1.41
116894150--116894179
6
4.8
6
95
4
51
16
0
3
80
0.85
116904481--116904520
7
5.7
7
82
11
55
2
10
2
85
0.80
116904483--116904529
14
3.3
14
82
8
51
6
10
4
78
1.06
116904488--116904535
13
3.5
13
83
11
51
8
8
4
79
1.06
116904865--116904899
18
1.9
18
88
11
54
51
2
0
45
1.16
116905900--116905937
14
2.8
14
88
4
51
52
5
13
28
1.61
116907118--116907191
19
3.9
19
70
15
55
54
2
5
37
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116907235--116907277
9
5.0
8
78
15
50
69
2
0
27
1.00
116907241--116907295
21
2.7
20
83
13
60
63
1
0
34
1.05
116907241--116907288
19
2.5
19
82
3
60
62
2
0
35
1.07
116907326--116907373
17
2.9
16
76
11
53
62
0
4
33
1.14
116909738--116909788
19
2.7
20
72
6
52
72
5
1
19
1.15
116912178--116912221
23
2.0
22
81
4
52
59
6
0
34
1.24
116920681--116920710
10
3.0
10
90
0
51
86
0
13
0
0.57
116920680--116920713
11
3.2
11
87
8
52
85
0
14
0
0.60
116922534--116922607
38
1.9
38
91
0
121
48
10
16
24
1.77
116923953--116924121
42
4.0
42
88
1
241
28
28
15
26
1.96
116924153--116924450
149
2.0
149
97
0
569
43
17
15
23
1.87
116929512--116929689
21
7.9
21
77
16
169
33
8
29
28
1.88
116929531--116929659
27
5.2
27
71
21
129
31
10
29
28
1.90
116929512--116929689
48
3.8
48
88
4
260
33
8
29
28
1.88
116935242--116935268
2
13.5
2
100
0
54
51
0
0
48
1.00
116935812--116935924
56
2.0
56
98
0
217
27
14
20
38
1.91
116942948--116942985
13
3.0
13
88
3
51
34
0
0
65
0.93
116943376--116943428
23
2.3
23
81
15
65
64
0
0
35
0.94
116945985--116946086
21
4.8
21
75
12
100
58
1
4
34
1.30
116945985--116946087
44
2.4
44
85
6
131
59
1
4
33
1.30
116945998--116946102
20
4.9
19
72
26
61
57
1
5
35
1.34
116946383--116946424
18
2.2
20
87
12
61
61
0
2
35
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116946383--116946426
21
2.1
21
83
8
54
61
0
2
36
1.09
116950158--116950183
11
2.4
11
100
0
52
34
0
7
57
1.27
116950255--116950283
15
1.9
15
100
0
58
51
13
0
34
1.42
116954539--116954648
26
4.2
26
97
0
193
36
23
5
34
1.78
116955062--116955124
3
21.7
3
77
9
51
69
1
1
26
1.06
116959393--116959449
21
2.6
23
83
11
82
33
3
26
36
1.74
116959925--116960189
122
2.2
121
97
2
498
29
3
7
60
1.41
116960164--116960190
3
9.0
3
100
0
54
33
0
0
66
0.92
116960427--116960458
16
2.0
16
93
0
55
21
21
6
50
1.71
116960547--116960684
3
47.0
3
67
12
63
30
7
2
58
1.41
116960652--116960716
21
3.0
21
77
8
69
23
6
6
64
1.39
116970147--116970186
21
1.9
21
89
0
62
32
15
7
45
1.74
116970540--116970647
26
4.2
26
95
0
189
30
6
26
36
1.82
116973309--116973415
23
4.7
23
72
20
75
30
5
6
57
1.48
116973317--116973477
23
6.5
24
67
24
72
30
7
6
55
1.54
116973741--116973800
26
2.3
26
82
8
77
33
5
6
55
1.48
116973785--116973854
19
3.8
18
73
15
63
34
1
8
55
1.39
116974079--116974245
25
7.2
25
74
18
116
35
3
5
55
1.42
116974098--116974245
47
3.2
45
73
23
132
35
3
6
55
1.41
116981842--116981871
6
4.8
6
92
8
51
13
0
0
86
0.57
116981842--116981874
7
5.0
7
96
3
52
15
0
0
84
0.61
116981842--116981871
13
2.4
12
94
5
51
13
0
0
86
0.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116982966--116983001
18
2.0
18
94
0
63
36
16
2
44
1.63
116984608--116984685
26
2.9
26
71
16
68
32
2
2
62
1.22
116987140--116987183
20
2.1
22
87
8
65
45
0
4
50
1.22
116987245--116987282
20
1.9
19
94
5
67
50
15
2
31
1.58
116987266--116987303
15
2.7
14
84
11
51
42
13
2
42
1.57
116987266--116987303
14
2.7
15
88
8
53
42
13
2
42
1.57
116987397--116987425
2
14.5
2
100
0
58
51
0
0
48
1.00
116999948--117000001
26
2.1
26
89
0
81
31
18
5
44
1.73
117001563--117001809
127
2.0
122
92
6
412
46
7
6
38
1.58
117005296--117005359
28
2.3
27
86
2
92
34
4
21
39
1.75
117008518--117008985
124
3.8
125
73
8
391
36
20
13
28
1.91
117015239--117015765
215
2.4
213
83
4
608
28
13
14
43
1.83
117020726--117020763
19
2.0
19
100
0
76
36
26
5
31
1.79
117032211--117032391
90
2.0
90
100
0
362
39
16
16
27
1.90
117035021--117035064
15
3.0
15
81
12
56
45
0
6
47
1.29
117035962--117035988
8
3.4
8
100
0
54
33
11
0
55
1.35
117037284--117037326
17
2.4
18
81
14
54
72
0
0
27
0.85
117037699--117038080
55
6.7
59
79
8
373
10
10
21
57
1.61
117037870--117037961
29
3.1
31
66
23
79
10
10
23
54
1.67
117037869--117037965
33
3.2
33
62
27
77
10
11
22
55
1.65
117037698--117038073
168
2.2
170
83
5
456
10
10
21
57
1.62
117037728--117038062
60
5.8
59
70
15
191
10
9
21
58
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
117041898--117042434
239
2.2
240
98
0
1033
32
13
8
45
1.75
117042911--117042956
23
2.0
23
100
0
92
43
4
8
43
1.55
117048004--117048038
16
2.2
16
94
0
61
45
5
0
48
1.26
117048936--117049495
218
2.6
217
87
0
789
39
21
15
24
1.91
117050891--117050961
35
2.0
35
94
0
124
47
19
11
21
1.80
117055501--117055535
15
2.2
16
90
5
54
65
11
5
17
1.43
117055512--117055551
21
2.0
21
85
5
55
67
12
5
15
1.38
117055579--117055626
24
2.0
24
83
4
60
37
20
22
18
1.94
117057043--117057082
22
1.9
20
85
10
53
47
0
7
45
1.31
117057138--117057211
38
1.9
38
91
0
121
21
20
14
43
1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362