Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  12  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3950281--3950364
26
3.1
26
75
12
80
61
4
8
25
1.44
3951000--3951131
27
5.0
27
72
9
83
54
3
6
35
1.42
3951152--3951217
25
2.6
26
83
9
75
63
1
3
31
1.19
3952066--3952095
13
2.3
13
94
0
51
33
13
13
40
1.83
3956925--3957008
26
3.1
26
75
12
80
61
4
8
25
1.44
3957644--3957775
27
5.0
27
72
9
83
54
3
6
35
1.42
3957796--3957861
25
2.6
26
83
9
75
63
1
3
31
1.19
3958705--3958734
13
2.3
13
94
0
51
33
13
13
40
1.83
3963565--3963648
26
3.1
26
75
12
80
61
4
8
25
1.44
3964268--3964399
27
5.0
27
72
9
83
54
3
6
35
1.42
3964420--3964485
25
2.6
26
83
9
75
63
1
3
31
1.19
3965325--3965354
13
2.3
13
94
0
51
33
13
13
40
1.83
3966028--3966069
19
2.3
19
80
19
54
33
11
14
40
1.82
3966036--3966126
19
4.9
19
85
8
134
36
10
16
36
1.84
3966057--3966112
18
3.5
15
81
18
60
35
10
17
35
1.85
3966044--3966133
35
2.5
37
85
10
125
36
11
16
35
1.84
3967332--3967413
26
3.2
26
91
0
137
34
7
23
35
1.82
3974928--3974985
11
5.5
10
84
15
73
86
0
10
3
0.69
3974928--3974979
11
4.6
11
85
4
77
86
0
9
3
0.69
3975917--3976056
43
3.3
41
68
16
115
32
22
21
22
1.98
3975911--3976114
84
2.4
85
85
2
284
33
23
20
22
1.97
3976239--3977159
207
4.5
207
93
0
1556
29
17
23
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3977549--3977639
19
4.9
19
88
8
143
37
10
15
36
1.83
3977570--3977625
18
3.5
15
81
18
60
37
10
16
35
1.83
3977557--3977646
35
2.5
37
87
10
134
37
11
15
35
1.83
3983332--3983388
30
1.9
30
85
7
80
59
1
0
38
1.08
3986860--3986934
36
2.1
35
80
14
82
37
1
2
58
1.20
3988254--3988307
23
2.4
23
84
6
67
57
7
3
31
1.44
3988257--3988327
3
23.3
3
71
8
54
60
5
2
30
1.34
3988910--3988971
17
3.6
17
70
8
54
20
3
6
69
1.25
3990660--3990760
51
2.0
51
96
0
184
45
7
14
31
1.74
4004293--4004352
32
1.9
31
87
12
88
31
1
3
63
1.20
4006442--4006489
26
1.9
24
87
8
69
64
6
0
29
1.18
4006441--4006515
21
3.3
21
80
14
62
68
5
0
26
1.11
4006479--4006530
12
4.6
12
76
13
56
67
9
0
23
1.20
4006460--4006518
21
2.8
21
80
12
68
69
6
0
23
1.12
4006618--4006643
5
5.2
5
100
0
52
0
42
57
0
0.98
4007551--4007599
16
3.2
16
75
24
61
53
0
0
46
1.00
4007553--4007639
28
2.9
28
76
22
88
48
1
0
50
1.08
4007653--4007723
15
4.6
15
74
16
65
50
1
0
47
1.09
4008176--4008214
14
2.8
14
88
0
51
30
17
10
41
1.83
4008384--4008416
15
2.2
15
100
0
66
21
18
9
51
1.73
4010536--4010571
18
2.0
18
88
0
54
0
55
16
27
1.42
4014768--4014965
98
2.0
98
98
0
378
22
16
14
46
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4038182--4038359
92
2.0
89
88
3
266
42
8
7
41
1.63
4042864--4043215
175
2.0
176
94
0
625
29
13
18
37
1.90
4044321--4044377
15
3.5
15
71
17
51
47
1
3
47
1.29
4049696--4049728
13
2.4
14
85
5
50
30
0
0
69
0.88
4054134--4054172
18
2.2
17
86
13
53
33
0
20
46
1.51
4054397--4054472
23
3.3
23
96
0
143
21
21
26
31
1.98
4061458--4061496
18
2.2
17
86
13
53
33
0
20
46
1.51
4061721--4061796
23
3.3
23
96
0
143
21
21
26
31
1.98
4063681--4063714
15
2.3
15
89
0
50
29
0
11
58
1.33
4065121--4065167
15
3.3
15
82
8
62
40
12
21
25
1.89
4065121--4065167
14
3.3
14
82
14
60
40
12
21
25
1.89
4068006--4068054
15
3.3
15
91
0
80
24
22
12
40
1.88
4077097--4077157
28
2.2
28
82
5
70
57
1
0
40
1.08
4078087--4078133
23
2.0
23
91
0
76
40
10
14
34
1.81
4078263--4078298
6
5.8
6
87
6
54
38
0
0
61
0.96
4078262--4078298
19
1.9
19
94
0
65
40
0
0
59
0.97
4094762--4094791
12
2.5
12
94
0
51
86
13
0
0
0.57
4100541--4100578
6
6.3
6
96
0
67
31
13
39
15
1.86
4104540--4104572
14
2.3
15
89
5
50
12
27
27
33
1.92
4111832--4111882
24
2.1
25
96
3
95
43
11
25
19
1.85
4111830--4111889
24
2.7
21
80
16
75
41
15
23
20
1.89
4113131--4113158
13
2.2
13
100
0
56
50
21
7
21
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4114161--4114185
10
2.5
10
100
0
50
24
0
28
48
1.52
4117556--4117580
2
12.5
2
100
0
50
52
0
0
48
1.00
4120390--4120419
12
2.5
12
94
0
51
53
10
26
10
1.66
4121430--4121495
34
1.9
34
100
0
132
27
22
21
28
1.99
4126712--4126745
16
2.2
15
89
5
50
41
0
0
58
0.98
4129112--4129163
20
2.5
20
87
3
68
65
5
17
11
1.44
4135921--4135969
20
2.5
20
76
6
55
63
0
4
32
1.13
4142148--4142172
3
8.3
3
100
0
50
0
64
0
36
0.94
4142385--4142455
10
7.0
10
79
12
74
66
0
1
32
1.01
4142381--4142485
21
5.2
20
73
15
92
64
0
0
34
1.00
4142388--4142498
19
5.7
19
68
20
61
65
0
0
33
0.99
4142386--4142498
40
2.9
39
78
12
117
66
0
0
32
0.98
4142381--4142469
30
2.9
29
79
11
90
65
0
1
33
1.00
4142382--4142561
10
18.4
9
67
19
60
61
2
1
35
1.18
4143288--4143350
30
2.1
30
82
5
74
53
0
3
42
1.16
4146908--4147367
230
2.0
230
99
0
902
40
16
11
31
1.84
4151490--4151574
35
2.4
35
88
7
118
61
1
2
35
1.17
4151517--4151574
17
3.4
17
69
4
53
65
0
3
31
1.09
4151510--4151584
35
2.2
34
87
2
105
65
1
4
29
1.19
4152500--4152556
19
3.4
16
79
13
53
43
0
1
54
1.10
4152500--4152550
17
2.9
17
85
8
59
43
0
0
56
0.99
4168783--4168813
3
10.3
3
92
0
53
0
29
0
70
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4171090--4171118
11
2.5
12
94
5
51
79
0
0
20
0.74
4171111--4171160
22
2.3
22
83
10
59
56
6
8
30
1.52
4177699--4177771
36
2.0
36
97
0
137
39
5
6
47
1.53
4183793--4183861
35
1.9
36
85
2
95
42
21
8
27
1.82
4191882--4191938
2
28.5
2
100
0
114
0
0
50
49
1.00
4192793--4192833
11
3.8
11
78
15
50
70
0
0
29
0.87
4193081--4193121
17
2.7
15
82
17
57
63
0
0
36
0.95
4196192--4196217
8
3.2
8
100
0
52
53
0
0
46
1.00
4200453--4200516
29
2.2
29
83
8
76
37
6
10
45
1.65
4210890--4210916
7
3.9
7
100
0
54
44
0
0
55
0.99
4223101--4223151
19
2.5
20
84
9
68
33
0
3
62
1.13
4223106--4223147
6
7.0
6
84
7
50
33
0
4
61
1.17
4230648--4230730
39
2.1
39
90
0
130
40
21
18
19
1.91
4230664--4230742
39
2.1
39
90
2
124
40
20
18
20
1.92
4230800--4231078
41
6.8
41
92
0
434
29
23
21
25
1.99
4231369--4231517
7
20.3
7
66
11
57
24
1
28
46
1.61
4231424--4231481
22
2.6
22
77
0
62
22
0
31
46
1.52
4231444--4231478
15
2.4
14
90
4
52
17
0
37
45
1.48
4231527--4231618
44
2.1
43
82
9
107
25
2
34
38
1.68
4231863--4231916
16
3.8
16
70
27
57
38
9
3
48
1.53
4232089--4232121
16
2.1
16
88
5
50
30
0
0
69
0.88
4233229--4233258
14
2.1
15
93
6
53
50
13
0
36
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4236478--4236527
23
2.2
23
96
0
91
36
16
14
34
1.88
4236650--4237095
241
1.9
241
97
0
838
34
18
14
32
1.91
4237206--4237333
9
13.6
9
76
9
121
46
21
0
31
1.57
4237223--4237300
39
2.0
39
97
0
147
46
21
0
32
1.52
4237219--4237331
57
2.0
57
89
0
172
46
23
0
30
1.58
4243191--4243341
43
3.5
43
82
3
198
27
29
17
25
1.98
4243341--4243531
99
1.9
100
92
3
323
25
17
21
35
1.95
4246451--4246481
8
3.8
8
91
8
53
51
0
0
48
1.00
4256559--4256609
22
2.5
21
84
15
63
45
1
0
52
1.12
4256574--4256636
29
2.1
31
82
11
78
50
1
0
47
1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362