genome.fa.s8.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  113  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37130208--37130390	79	2.3	81	85	7	241	25	27	22	24	2.00
37130187--37130390	40	5.1	40	83	8	247	25	27	22	24	1.99
37132209--37132277	9	7.5	10	81	14	53	69	1	4	24	1.15
37132246--37132278	3	11.0	3	100	0	66	66	0	0	33	0.92
37134001--37134368	43	8.6	43	93	0	592	31	32	24	11	1.91
37134361--37134484	38	3.2	38	78	4	106	29	24	20	25	1.99
37141542--37141748	46	4.5	44	78	9	198	28	19	29	22	1.98
37142503--37142586	31	2.7	31	92	1	134	28	25	16	29	1.97
37142807--37142876	25	2.8	25	91	4	106	24	24	27	24	2.00
37145986--37146043	30	1.9	31	86	10	84	37	3	6	51	1.46
37148215--37148352	43	3.2	42	84	11	165	24	18	25	31	1.97
37148215--37148376	85	1.9	85	81	5	193	25	16	25	32	1.96
37148443--37148482	19	2.1	19	95	0	71	35	0	22	42	1.54
37149400--37149543	51	2.7	52	76	11	132	21	24	33	20	1.97
37155941--37156097	43	3.7	43	79	9	169	24	19	26	29	1.99
37157525--37157703	41	4.3	41	88	5	254	20	19	24	36	1.95
37157545--37157701	84	1.9	84	90	5	255	19	19	24	36	1.95
37157525--37157711	84	2.2	84	85	5	247	20	18	22	37	1.94
37160872--37160900	15	1.9	15	100	0	58	34	3	13	48	1.60
37165136--37165225	27	3.4	27	83	3	112	27	18	7	45	1.77
37165151--37165237	25	3.4	25	76	12	86	28	16	10	44	1.80
37165257--37165355	27	3.7	27	83	4	128	40	23	8	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37165257--37165394	27	5.1	27	78	7	111	40	21	7	29	1.82
37165257--37165381	54	2.3	55	82	5	139	40	22	8	28	1.82
37165310--37165439	27	4.7	27	76	8	111	43	20	6	30	1.76
37165483--37165556	27	2.8	26	75	17	71	39	21	18	20	1.93
37168997--37169083	27	3.2	27	85	0	120	29	20	5	43	1.75
37169092--37169216	27	4.6	27	77	5	119	42	19	8	29	1.81
37169120--37169243	27	4.6	27	77	6	108	42	21	6	29	1.78
37169120--37169244	54	2.3	54	82	8	148	42	21	6	29	1.78
37170233--37170302	25	2.8	25	91	0	104	28	22	22	25	1.99
37173514--37173544	16	1.9	16	100	0	62	45	19	22	12	1.84
37173757--37173816	30	2.1	29	81	12	70	31	15	25	28	1.95
37187401--37187429	3	9.7	3	100	0	58	34	0	0	65	0.93
37187450--37187504	19	3.0	19	72	22	55	30	3	1	63	1.22
37193095--37193249	40	3.9	40	85	8	226	23	29	23	24	1.99
37193095--37193245	79	1.9	80	90	4	243	23	29	23	23	1.99
37196478--37196520	13	3.3	13	90	6	61	86	0	13	0	0.58
37196478--37196520	19	2.3	19	87	0	68	86	0	13	0	0.58
37197392--37197571	44	4.1	45	76	9	174	31	15	24	28	1.96
37197560--37198037	119	4.0	119	93	0	776	33	17	18	30	1.94
37197961--37198312	83	4.2	83	97	0	650	33	19	20	27	1.96
37200073--37200161	27	3.3	28	77	12	80	32	2	3	61	1.24
37200244--37200298	19	3.0	19	72	22	55	30	3	1	63	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37203901--37203954	23	2.3	23	83	0	72	20	16	22	40	1.91
37206998--37207113	39	3.0	38	84	5	151	28	26	20	24	1.99
37214665--37214849	40	4.7	40	78	7	180	25	28	21	25	1.99
37214781--37214858	40	1.9	41	82	10	97	26	28	20	24	1.99
37225732--37225837	40	2.7	40	87	0	158	38	22	14	24	1.91
37231202--37231331	40	3.2	40	89	2	181	23	21	29	26	1.99
37231311--37231352	21	2.0	21	100	0	84	23	19	23	33	1.97
37231271--37231392	61	2.0	61	93	0	208	25	20	25	28	1.99
37231332--37231439	40	2.7	39	83	7	137	27	22	25	25	2.00
37231240--37231422	101	1.8	101	87	2	278	25	21	26	26	2.00
37237391--37237608	40	5.5	40	92	2	343	23	23	27	24	2.00
37245620--37245837	40	5.5	40	88	2	307	24	22	27	25	2.00
37247393--37247479	31	2.8	31	92	1	138	27	13	33	25	1.94
37247456--37247591	56	2.4	56	87	0	191	27	14	24	33	1.94
37255466--37255499	8	4.2	8	84	0	50	47	14	29	8	1.75
37256200--37256264	34	1.9	33	84	9	87	23	24	27	24	2.00
37257664--37257798	56	2.4	56	93	0	234	27	14	25	32	1.95
37257664--37257827	56	2.9	56	88	3	206	26	15	26	31	1.96
37263436--37263482	10	4.6	10	80	12	51	53	29	0	17	1.44
37264010--37264145	67	2.0	67	100	0	272	34	23	5	36	1.79
37264281--37264407	44	2.9	43	81	10	127	35	26	14	22	1.94
37270727--37270901	40	4.4	40	85	3	203	25	28	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37271641--37271683	21	2.0	21	86	8	61	23	32	0	44	1.54
37278737--37278954	40	5.5	40	84	4	237	27	29	20	22	1.98
37278968--37279010	18	2.3	19	84	4	52	44	20	4	30	1.72
37280213--37280249	6	6.5	6	81	12	51	0	16	0	83	0.64
37280213--37280249	17	2.2	17	90	0	56	0	16	0	83	0.64
37280893--37280923	12	2.6	12	94	0	53	77	6	0	16	0.97
37284137--37284233	34	2.9	34	80	6	115	24	22	24	27	2.00
37285380--37285766	196	2.0	195	94	1	677	25	17	32	24	1.97
37290314--37290344	12	2.6	12	100	0	62	35	0	45	19	1.51
37290313--37290353	12	3.4	12	89	0	55	39	0	41	19	1.52
37292186--37292360	50	3.5	49	83	3	208	28	25	18	26	1.98
37292186--37292368	101	1.8	98	84	3	249	27	26	19	26	1.99
37292594--37292647	27	2.0	27	85	0	72	38	12	9	38	1.76
37298381--37298445	34	1.9	34	87	0	94	26	24	23	26	2.00
37300738--37300772	17	2.1	17	88	0	52	57	0	0	42	0.99
37305006--37305036	16	1.9	16	93	0	53	41	9	0	48	1.36
37314072--37314201	41	3.0	42	80	11	120	30	26	12	30	1.92
37314108--37314232	49	2.6	47	84	9	157	31	27	12	28	1.93
37314128--37314279	47	3.2	46	83	5	153	31	25	13	29	1.94
37314301--37314449	31	4.8	31	83	0	190	28	25	18	28	1.98
37314301--37314449	62	2.4	62	89	0	226	28	25	18	28	1.98
37319403--37319564	45	3.6	44	88	7	222	20	20	30	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37322248--37322314	27	2.5	27	85	0	80	17	26	25	29	1.98
37322404--37322452	22	2.3	20	80	13	53	63	4	30	2	1.24
37325997--37326090	48	2.0	48	95	0	170	29	23	13	32	1.93
37328334--37328459	39	3.2	39	86	0	171	32	19	25	23	1.97
37331285--37331313	14	2.1	14	100	0	58	34	6	31	27	1.83
37341616--37341744	46	2.8	46	94	2	206	30	29	20	19	1.97
37341624--37341763	46	3.0	45	87	6	133	29	29	20	20	1.98
37347583--37347749	43	3.8	43	93	1	280	29	32	25	11	1.92
37347771--37347889	38	3.1	38	81	2	130	30	25	21	23	1.99
37353976--37354007	15	2.0	17	88	11	50	25	0	31	43	1.55
37370451--37370674	56	4.0	56	84	4	256	34	22	15	27	1.94
37377114--37377249	56	2.4	56	85	0	191	31	24	13	30	1.94
37381661--37381736	38	2.0	38	94	5	136	32	26	14	26	1.94
37383009--37383094	31	2.8	31	87	1	138	23	24	18	33	1.97
37383299--37383381	25	3.4	25	86	8	91	27	24	20	27	1.99
37383312--37383381	25	2.8	25	91	0	113	28	24	22	24	1.99
37383429--37383485	20	2.8	20	94	5	98	33	17	10	38	1.84
37383429--37383497	11	6.7	11	77	14	76	33	17	11	37	1.86
37385868--37386316	47	9.6	47	93	0	673	34	12	28	25	1.92
37385837--37386350	94	5.5	94	89	0	686	33	11	28	26	1.91
37385932--37386005	23	3.2	23	62	24	55	28	10	29	31	1.91
37386097--37386172	22	3.3	22	66	16	64	32	11	28	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37386330--37386420	46	2.0	46	86	0	128	34	6	31	27	1.83
37394892--37394977	31	2.8	31	85	1	120	25	25	17	31	1.97
37395195--37395289	25	3.8	25	95	0	172	26	24	25	24	2.00
37395333--37395381	11	4.7	11	80	12	59	32	18	12	36	1.88
37415648--37415705	30	1.9	30	85	0	80	44	1	24	29	1.63
37416439--37416622	67	2.8	64	76	8	185	29	17	30	22	1.97
37420079--37420156	27	2.9	27	83	7	97	34	15	19	30	1.93
37420650--37420678	15	1.9	15	100	0	58	20	13	24	41	1.89
37436886--37436942	29	2.0	29	82	6	71	61	0	8	29	1.26
37437129--37437170	20	2.1	20	82	8	50	71	7	0	21	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362