genome.fa.s8.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  120  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39630218--39630446	99	2.3	99	84	3	273	25	19	27	28	1.99
39634496--39634532	19	2.0	19	85	15	51	67	16	0	16	1.23
39636079--39636119	22	1.9	22	85	5	57	17	29	41	12	1.85
39637239--39637508	47	5.8	44	77	12	213	22	30	20	27	1.98
39637335--39637504	46	3.7	46	83	9	202	21	30	22	25	1.99
39637240--39637508	94	2.9	91	80	11	269	22	30	20	26	1.98
39637240--39637504	140	1.9	141	84	3	356	22	30	20	26	1.98
39638724--39638752	10	2.9	10	100	0	58	20	37	31	10	1.86
39642433--39642501	27	2.6	27	80	0	75	26	13	18	42	1.87
39642834--39642871	19	2.0	19	89	0	58	23	23	10	42	1.85
39643770--39643892	46	2.6	46	82	7	133	26	20	29	24	1.99
39654491--39654713	112	2.0	112	91	0	365	26	27	25	21	1.99
39665634--39665687	21	2.6	21	96	0	99	25	12	11	50	1.74
39666309--39666480	93	1.8	93	89	0	272	27	28	20	22	1.99
39666301--39666476	46	3.8	46	77	7	176	28	27	20	22	1.99
39683153--39683201	6	8.0	6	84	4	62	14	6	0	79	0.91
39683153--39683226	24	3.0	25	82	9	82	16	6	0	77	0.98
39683162--39683226	12	5.3	12	73	12	53	15	6	0	78	0.94
39683173--39683226	19	2.8	18	86	8	63	14	7	0	77	0.97
39686087--39686119	13	2.6	13	90	4	50	39	0	12	48	1.40
39689474--39689735	46	5.6	46	78	11	250	23	28	19	28	1.98
39689474--39689741	94	2.9	89	78	12	274	23	28	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39697369--39697440	26	2.8	26	87	2	101	26	23	20	29	1.99
39697657--39697742	31	2.8	31	92	1	147	32	17	25	24	1.97
39713553--39713663	42	2.6	42	81	2	125	33	15	22	28	1.94
39716347--39716455	37	2.9	37	90	0	173	27	31	19	22	1.97
39716602--39716900	48	6.1	48	89	5	456	32	25	5	36	1.79
39716602--39716900	100	3.1	98	92	2	494	32	25	5	36	1.79
39716605--39716897	148	2.0	149	92	2	491	32	25	5	36	1.80
39719654--39719767	43	2.7	42	78	5	131	28	16	24	29	1.97
39719646--39719767	42	2.9	42	79	4	147	29	15	24	30	1.96
39720484--39720517	15	2.3	15	89	0	50	11	2	41	44	1.56
39732023--39732155	49	2.7	50	79	11	157	26	21	29	23	1.99
39736672--39736826	42	3.7	42	79	6	154	27	18	24	29	1.98
39737728--39737796	21	3.0	23	76	20	72	28	15	14	40	1.87
39743254--39743305	17	3.0	17	80	8	52	69	1	7	21	1.24
39743267--39743310	17	2.6	17	81	0	52	70	0	6	22	1.11
39746151--39746203	26	2.0	27	85	7	74	24	13	22	39	1.90
39747234--39747341	26	4.2	26	93	0	189	36	24	7	32	1.83
39757289--39757403	42	2.7	42	84	1	140	26	33	22	17	1.96
39765235--39765383	40	3.7	40	90	3	237	26	27	22	24	2.00
39767047--39767204	38	4.1	38	83	6	185	23	21	24	30	1.99
39767047--39767204	76	2.1	78	84	4	205	23	21	24	30	1.99
39769742--39769783	21	2.0	20	86	13	59	50	11	0	38	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39772716--39772890	45	3.8	46	79	13	216	20	20	29	29	1.98
39780228--39780399	45	3.8	45	75	17	183	20	19	30	29	1.97
39782200--39782238	20	2.0	20	90	10	62	5	7	20	66	1.36
39788300--39788444	41	3.5	40	80	10	143	23	20	28	26	1.99
39790194--39790230	18	2.1	19	90	10	60	29	8	27	35	1.85
39795751--39795919	41	4.1	41	77	8	148	26	28	21	23	1.99
39795777--39795919	41	3.5	41	83	7	159	26	28	21	23	1.99
39812746--39812903	43	3.7	44	71	12	121	26	16	24	32	1.96
39817258--39817359	34	3.0	34	100	0	204	35	8	23	32	1.86
39820534--39820709	46	3.8	46	78	12	207	20	20	29	29	1.98
39820531--39820702	93	1.8	93	94	0	308	20	20	29	28	1.98
39823003--39823159	42	3.7	43	75	10	142	28	19	22	29	1.98
39822998--39823140	43	3.3	41	80	11	128	27	20	22	30	1.98
39827072--39827108	14	2.6	14	95	0	65	8	40	13	37	1.74
39829590--39829714	29	4.3	29	86	1	171	32	29	13	24	1.94
39837051--39837242	40	4.8	40	92	0	285	20	28	26	23	1.99
39845041--39845230	40	4.8	40	92	3	287	21	29	24	24	1.99
39845041--39845234	79	2.5	80	88	5	295	21	28	24	25	1.99
39847565--39847611	19	2.5	19	86	6	60	25	19	10	44	1.82
39854076--39854107	14	2.4	14	90	10	50	25	6	28	40	1.79
39854073--39854352	50	5.6	50	79	3	249	25	15	27	32	1.96
39854502--39854543	19	2.2	19	95	0	75	26	4	28	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39856618--39856880	40	6.6	40	88	3	325	26	27	20	24	1.99
39864428--39864687	39	6.6	40	86	4	298	26	28	20	25	1.99
39864428--39864648	79	2.8	78	86	4	302	26	28	19	25	1.99
39864431--39864687	79	3.3	80	85	4	256	26	28	20	24	1.99
39868436--39868662	48	4.8	47	80	7	201	24	32	18	24	1.97
39868444--39868801	94	3.8	92	75	11	241	24	28	19	27	1.98
39868390--39868799	49	8.6	48	77	10	276	24	28	19	27	1.98
39875640--39875686	23	2.1	23	96	4	87	25	29	17	27	1.97
39876186--39876406	40	5.6	40	80	2	232	24	24	23	26	2.00
39876186--39876406	80	2.8	79	83	3	257	24	24	23	26	2.00
39880650--39880716	32	2.1	32	100	0	134	37	14	16	31	1.89
39880922--39880972	26	2.0	26	84	0	66	39	25	17	17	1.92
39885555--39885670	58	2.0	58	98	0	223	44	16	13	25	1.84
39901118--39901239	45	2.7	44	80	8	129	37	15	19	27	1.92
39901258--39901812	45	12.0	45	70	10	283	35	16	18	29	1.93
39901514--39901883	96	3.9	96	76	6	326	35	18	17	28	1.93
39901539--39901707	89	1.9	89	87	0	248	35	17	18	28	1.93
39901802--39901983	44	4.1	44	78	2	186	34	16	18	31	1.93
39903927--39903968	20	2.1	20	100	0	84	23	23	26	26	2.00
39905090--39905147	25	2.3	25	84	0	80	32	24	15	27	1.95
39911009--39911139	48	2.7	50	82	13	161	29	20	25	23	1.99
39936320--39936497	40	4.5	40	87	3	218	24	28	24	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39938598--39938768	46	3.7	46	73	13	170	29	27	20	22	1.98
39940362--39940461	29	3.5	29	83	1	121	29	30	15	26	1.95
39941182--39941207	7	3.7	7	100	0	52	42	46	11	0	1.40
39944067--39944143	24	3.3	23	78	8	75	11	23	18	46	1.81
39944075--39944143	16	4.3	16	86	0	84	11	24	17	46	1.81
39944093--39944134	8	5.2	8	91	0	57	9	23	21	45	1.81
39944619--39944651	13	2.6	13	90	4	50	48	12	0	39	1.40
39947563--39947619	23	2.5	23	78	18	66	75	0	3	21	0.95
39955601--39955702	29	3.6	29	79	11	120	25	28	18	27	1.98
39967611--39967838	45	5.0	45	76	10	189	28	19	28	22	1.98
39967612--39967872	139	1.9	137	82	9	323	29	19	27	23	1.98
39970228--39970340	40	2.8	40	75	9	104	31	29	15	23	1.95
39973726--39973785	25	2.4	25	80	0	66	33	18	23	25	1.97
39977301--39977452	42	3.6	41	84	5	178	30	24	13	31	1.94
39985049--39985081	16	2.0	17	94	5	59	60	0	0	39	0.97
39985091--39985130	17	2.4	17	79	4	55	42	0	0	57	0.98
39988056--39988092	17	2.1	17	90	5	56	64	0	0	35	0.94
39988051--39988092	10	4.4	9	82	17	50	64	0	0	35	0.94
39988191--39988256	29	2.2	29	86	5	87	36	1	3	59	1.22
39988232--39988279	21	2.3	22	85	10	73	35	6	4	54	1.45
39988564--39988601	20	1.9	20	88	0	58	34	34	5	26	1.79
39990097--39990272	46	3.8	46	78	12	198	30	29	19	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39990106--39990275	93	1.8	93	94	0	304	28	29	20	21	1.98
40006526--40006657	65	2.0	66	97	1	248	45	10	13	30	1.77
40007782--40007823	18	2.3	18	87	4	57	38	7	9	45	1.64
40010650--40010679	14	2.1	14	93	0	51	60	0	0	40	0.97
40014093--40014136	17	2.6	18	85	10	65	47	9	11	31	1.71
40015242--40015440	57	3.5	57	93	0	344	28	14	18	38	1.90
40018274--40018338	32	2.0	32	87	0	94	52	21	3	23	1.61
40018537--40018592	22	2.5	22	97	0	103	26	26	30	16	1.96
40020373--40020442	35	2.0	35	100	0	140	48	11	20	20	1.79
40022793--40022842	24	2.0	24	84	3	64	52	6	16	26	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362