genome.fa.s8.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  36  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10589615--10589649	16	2.2	16	100	0	70	8	28	31	31	1.87
10589788--10589912	60	2.1	60	95	0	223	35	8	13	43	1.74
10590239--10590777	104	5.2	105	91	4	851	35	7	4	53	1.48
10590921--10591126	18	11.0	18	69	10	110	45	14	4	35	1.65
10590921--10591163	9	26.3	9	67	15	70	45	15	3	35	1.64
10590883--10591142	74	3.5	73	84	7	324	46	14	3	35	1.63
10596624--10596674	21	2.4	21	86	0	75	31	17	49	1	1.58
10596929--10596995	31	2.2	31	83	0	80	17	7	17	56	1.63
10597070--10597181	42	2.6	44	83	5	149	29	23	17	29	1.97
10597801--10597919	7	15.4	7	68	22	53	62	0	4	32	1.20
10597801--10597851	15	3.5	15	81	5	61	68	0	0	31	0.90
10597871--10597917	24	2.0	23	88	12	69	63	0	2	34	1.06
10597871--10597917	12	4.0	12	78	10	53	63	0	2	34	1.06
10598020--10598079	32	1.9	32	86	3	86	61	1	6	30	1.31
10599475--10600051	45	13.0	45	68	14	247	26	27	14	31	1.95
10599475--10599893	90	4.7	90	88	1	581	26	26	14	31	1.95
10599475--10599972	180	2.8	178	84	3	627	26	27	14	31	1.95
10599811--10599972	81	2.0	82	85	1	218	26	30	12	30	1.93
10611998--10612023	13	2.0	13	100	0	52	61	7	0	30	1.24
10612038--10612089	7	7.3	7	77	12	52	67	0	0	32	0.91
10612044--10612195	19	8.4	19	64	24	53	64	0	3	31	1.12
10612038--10612089	15	3.6	15	82	5	63	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10612097--10612201	12	9.0	12	73	20	80	63	0	1	34	1.05
10612099--10612201	16	6.7	14	70	23	57	64	0	1	33	1.05
10612102--10612155	7	8.4	7	73	19	55	62	0	0	37	0.95
10612120--10612201	13	6.6	13	73	16	59	64	0	2	32	1.07
10612097--10612199	23	4.5	23	72	17	81	64	0	1	33	1.05
10612098--10612199	44	2.2	46	70	24	54	63	0	1	34	1.05
10612027--10612164	33	4.1	33	74	13	113	62	0	3	33	1.18
10612230--10612283	29	1.9	29	85	7	76	68	0	1	29	1.00
10612236--10612305	31	2.2	32	85	10	90	61	0	5	32	1.20
10613529--10613564	10	3.5	10	96	3	63	0	0	8	91	0.41
10613529--10613564	11	3.4	11	92	7	65	0	0	8	91	0.41
10613521--10613564	21	2.1	21	91	0	70	4	0	6	88	0.62
10614643--10614700	17	3.4	17	68	13	55	32	18	3	44	1.67
10614632--10614705	35	2.1	35	100	0	148	33	16	2	47	1.61
10616756--10616806	15	3.5	15	81	5	52	62	0	5	31	1.19
10628953--10629363	127	3.2	126	80	6	454	37	18	17	26	1.93
10630138--10630169	2	16.0	2	100	0	64	50	0	0	50	1.00
10631507--10631639	44	3.0	44	87	0	140	31	17	17	33	1.93
10631527--10631642	44	2.6	44	90	0	178	31	14	18	35	1.91
10631820--10631903	44	1.9	44	85	2	116	27	22	17	32	1.97
10631596--10632611	178	5.7	178	87	2	1396	29	21	18	30	1.97
10631596--10632611	357	2.8	357	90	0	1534	29	21	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10632725--10632849	64	2.0	64	90	3	198	36	15	17	31	1.91
10639226--10639362	60	2.3	60	86	8	181	24	24	21	29	1.99
10639214--10639326	28	3.9	28	71	21	90	24	25	21	28	1.99
10647090--10647479	128	3.1	126	80	6	376	38	19	16	25	1.92
10656008--10656062	28	2.0	28	96	0	101	56	12	7	23	1.61
10659718--10659742	4	6.2	4	100	0	50	0	28	0	72	0.86
10670386--10670488	49	2.1	49	98	0	197	36	18	4	39	1.72
10674894--10674925	16	2.0	16	93	0	55	34	18	0	46	1.49
10675136--10675369	50	4.6	50	77	6	256	28	24	17	29	1.98
10681547--10681600	27	2.0	27	96	0	99	57	5	18	18	1.59
10684324--10684379	26	2.2	26	90	3	87	41	19	21	17	1.91
10688101--10688164	32	2.0	32	93	0	110	54	14	7	23	1.65
10695619--10695709	19	4.9	19	87	12	145	38	9	15	36	1.81
10695997--10696034	18	2.1	18	90	9	60	31	0	0	68	0.90
10706025--10706186	89	1.8	87	81	7	202	30	19	24	26	1.98
10706219--10706326	57	1.9	57	88	0	162	31	19	26	22	1.98
10706262--10706492	78	3.0	78	91	2	392	31	18	24	25	1.98
10706433--10706705	45	6.0	45	76	9	261	31	15	27	25	1.96
10706433--10706705	89	3.0	90	80	10	272	31	15	27	25	1.96
10707056--10707111	18	3.5	15	81	18	60	37	10	16	35	1.83
10707054--10707132	35	2.2	37	86	13	121	37	10	16	35	1.82
10707054--10707125	19	3.9	19	89	10	123	37	11	15	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10707054--10707148	17	4.8	22	84	12	79	36	9	15	37	1.80
10707415--10707450	19	1.9	18	88	5	54	33	0	0	66	0.92
10720468--10720833	49	7.7	47	73	10	205	28	18	27	24	1.98
10727513--10727774	48	5.6	47	78	10	209	27	17	29	25	1.98
10727507--10727829	92	3.4	93	80	7	246	26	17	29	25	1.98
10727561--10727829	140	1.9	140	80	6	312	27	17	29	25	1.98
10773038--10773118	25	3.2	25	80	3	92	28	19	24	27	1.99
10773937--10773971	10	3.4	10	92	4	52	2	8	0	88	0.61
10773937--10773973	15	2.6	14	87	8	56	2	8	0	89	0.58
10778848--10778921	38	1.9	38	94	0	130	36	9	16	37	1.81
10779673--10779714	14	2.9	15	79	10	52	26	0	33	40	1.56
10779979--10780090	32	3.5	32	83	9	156	43	10	9	35	1.73
10782521--10782610	44	2.0	44	97	0	171	38	15	23	22	1.92
10782734--10782790	30	1.9	30	89	3	89	45	8	7	38	1.62
10786541--10786575	18	1.9	18	94	0	61	34	0	28	37	1.58
10791456--10791490	17	2.1	17	94	0	61	42	20	22	14	1.88
10791908--10791971	13	4.9	13	84	7	94	32	6	25	35	1.81
10792132--10792179	8	5.6	9	75	24	50	43	0	0	56	0.99
10792132--10792190	19	3.1	19	90	7	84	44	0	0	55	0.99
10792576--10792601	12	2.2	12	100	0	52	30	42	0	26	1.56
10794014--10794247	72	3.3	72	88	2	348	54	14	5	24	1.63
10794680--10794727	18	2.7	18	96	0	87	39	12	12	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10795658--10795748	21	4.3	21	80	8	103	43	6	13	36	1.70
10801101--10801208	26	4.2	26	91	0	180	33	7	23	36	1.83
10808131--10808290	26	6.2	26	90	1	241	33	6	23	36	1.80
10808131--10808290	52	3.1	52	92	3	268	33	6	23	36	1.80
10811114--10811162	26	1.9	25	87	4	71	69	4	8	18	1.30
10812078--10812128	20	2.6	20	84	3	68	54	0	1	43	1.11
10815445--10815573	37	3.5	37	76	4	116	51	11	20	16	1.74
10815454--10815598	74	2.0	74	81	8	170	51	13	17	17	1.76
10816674--10816707	16	2.1	16	88	0	50	67	2	8	20	1.31
10818348--10818387	20	2.0	19	85	9	53	37	20	7	35	1.81
10823914--10823960	21	2.2	22	92	3	78	21	19	38	21	1.94
10825005--10825117	37	3.1	37	76	6	108	48	14	15	21	1.80
10828042--10828080	14	2.8	14	80	0	51	38	0	5	56	1.22
10828131--10828196	11	6.0	11	69	25	50	39	3	6	51	1.42
10828132--10828196	24	2.6	25	83	7	71	40	3	6	50	1.43
10828247--10828287	19	2.3	17	87	8	55	26	2	2	68	1.15
10828332--10828414	42	2.0	42	100	0	166	31	9	8	50	1.65
10828488--10828528	3	13.3	3	94	5	73	31	0	2	65	1.05
10828766--10828825	26	2.4	23	77	17	66	33	3	6	56	1.42
10830743--10830822	37	2.2	37	90	4	126	47	11	22	18	1.80
10834270--10834368	26	3.9	25	90	4	162	36	23	8	32	1.84
10834270--10834376	51	2.1	52	92	1	180	37	23	7	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10839382--10839407	11	2.4	11	100	0	52	34	42	7	15	1.75
10841352--10841459	26	4.2	26	95	0	180	36	23	7	33	1.83
10842868--10842897	10	3.0	10	95	0	51	40	33	0	26	1.57
10847383--10847407	10	2.5	10	100	0	50	40	36	0	24	1.55
10848216--10848270	19	2.8	20	71	17	53	63	3	5	27	1.33
10853485--10853538	3	18.0	3	96	0	90	62	0	3	33	1.12
10854698--10854731	17	2.0	17	100	0	68	5	0	41	52	1.25
10857434--10857458	12	2.1	12	100	0	50	56	16	8	20	1.65
10863573--10863617	24	1.9	23	82	13	56	40	20	0	40	1.52
10864025--10864077	23	2.3	24	83	6	65	39	11	5	43	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362