genome.fa.s8.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  100  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32467477--32467578	45	2.2	45	81	6	107	21	26	19	32	1.97
32468188--32468248	30	2.0	30	90	0	95	34	21	6	37	1.79
32472144--32472254	44	2.5	43	81	12	118	30	11	22	35	1.90
32472146--32472349	48	4.5	47	78	6	181	27	12	24	35	1.92
32478620--32478819	48	4.4	47	78	6	173	27	13	24	35	1.93
32478617--32478819	91	2.2	89	78	10	214	27	13	23	35	1.92
32495654--32495846	40	4.9	40	93	1	327	26	22	28	22	1.99
32495654--32495872	79	2.8	80	88	4	331	27	23	27	21	1.99
32503696--32503844	40	3.8	39	88	5	221	24	24	28	22	1.99
32506998--32507026	14	2.1	14	100	0	58	20	17	27	34	1.95
32519077--32519135	30	2.0	30	93	0	100	54	13	3	28	1.55
32519698--32519746	6	7.6	7	90	9	54	55	0	0	44	0.99
32519704--32519748	6	7.3	6	92	2	72	51	0	0	48	1.00
32519709--32519759	12	4.2	12	92	2	66	52	0	1	45	1.12
32521812--32521869	31	1.9	31	82	6	75	43	10	5	41	1.61
32524243--32524301	31	1.9	31	89	0	91	33	27	11	27	1.92
32524266--32524479	60	3.7	61	75	15	198	31	25	12	30	1.93
32524288--32524395	54	2.0	54	85	3	146	31	25	13	29	1.94
32525847--32525981	56	2.4	56	92	2	218	30	16	23	29	1.96
32525847--32526012	56	3.0	56	85	8	180	30	16	23	30	1.96
32528165--32528273	37	2.9	37	95	0	191	26	31	19	22	1.98
32528333--32528467	50	2.7	50	95	0	234	32	25	5	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32528438--32528629	47	4.1	47	93	1	298	26	29	11	32	1.92
32528529--32528604	22	3.3	22	67	22	66	25	30	13	31	1.93
32536168--32536225	26	2.2	26	96	0	107	39	0	20	39	1.53
32536861--32536996	56	2.4	57	92	2	222	26	15	26	31	1.96
32536861--32537027	56	3.0	56	87	5	205	25	14	26	32	1.95
32538066--32538237	85	2.0	85	96	0	317	32	4	21	41	1.74
32543478--32543692	48	4.5	48	75	8	204	26	27	16	29	1.97
32543508--32543682	96	1.8	96	84	7	239	27	28	16	28	1.97
32543478--32543729	48	5.2	48	75	9	185	25	26	17	30	1.97
32546612--32546708	38	2.6	38	89	0	149	30	19	19	29	1.97
32549888--32549922	17	2.1	17	100	0	70	31	5	17	45	1.71
32549894--32549931	17	2.2	17	90	0	58	28	7	18	44	1.78
32550910--32551082	43	4.0	42	75	14	140	23	17	26	32	1.97
32553378--32553538	42	3.9	41	73	6	126	30	26	13	29	1.94
32553378--32553550	84	2.1	84	80	2	186	31	26	13	29	1.94
32559683--32559748	34	1.9	34	90	6	107	25	24	24	25	2.00
32569103--32569230	64	2.0	64	98	0	247	29	27	21	21	1.98
32569852--32569904	27	2.0	27	88	0	79	33	15	16	33	1.90
32575987--32576077	40	2.3	40	88	3	130	25	13	24	37	1.91
32589376--32589695	46	7.0	46	93	0	480	21	23	15	39	1.91
32591654--32591692	11	3.5	11	96	0	69	66	0	5	28	1.12
32591666--32591741	20	3.7	21	77	10	68	59	6	1	32	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32596526--32596698	86	2.0	86	85	2	231	21	16	23	38	1.92
32596528--32596698	43	4.0	43	80	6	177	22	16	22	38	1.93
32598168--32598291	48	2.6	48	88	0	185	26	16	29	27	1.97
32599601--32599772	93	1.8	93	91	0	281	28	30	20	20	1.98
32599593--32599768	46	3.8	46	76	12	189	29	29	20	20	1.98
32601187--32601250	31	2.1	31	90	0	101	25	23	14	37	1.92
32601444--32601585	24	6.0	24	89	5	209	29	21	19	28	1.98
32601465--32601584	23	5.1	23	92	3	195	30	20	19	29	1.97
32601465--32601585	47	2.6	47	94	0	215	30	20	19	29	1.97
32601637--32601701	20	3.2	20	93	0	112	32	21	12	33	1.90
32601637--32601690	11	5.3	11	70	17	53	31	20	12	35	1.90
32601738--32601785	25	2.0	24	87	4	69	27	14	25	33	1.94
32604087--32604306	48	4.5	48	81	2	260	26	18	28	26	1.98
32608583--32608874	50	5.8	50	75	6	232	32	25	16	26	1.96
32608745--32608874	52	2.6	50	82	2	152	33	26	13	25	1.94
32611037--32611066	14	2.1	14	93	0	51	23	6	6	63	1.43
32624297--32624387	35	2.6	35	89	0	137	40	29	10	18	1.85
32627879--32627932	25	2.1	27	83	16	71	27	3	5	62	1.34
32631719--32631879	42	3.7	43	73	13	130	27	28	19	24	1.98
32631711--32631879	90	1.9	90	84	0	230	27	28	19	24	1.99
32635608--32635938	48	6.9	48	97	0	599	34	6	28	30	1.82
32636079--32636181	37	2.8	37	90	0	161	22	18	33	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32638666--32638843	27	6.6	27	83	3	205	26	15	28	29	1.96
32638667--32638822	82	1.9	81	88	3	233	26	15	28	29	1.96
32638663--32638843	82	2.2	81	83	2	229	27	15	27	29	1.96
32642310--32642487	27	6.6	27	83	3	205	26	15	28	29	1.96
32642311--32642466	82	1.9	81	88	3	233	26	15	28	29	1.96
32642307--32642487	82	2.2	81	83	2	229	27	15	27	29	1.96
32648434--32648466	17	2.0	17	88	5	50	69	0	0	30	0.88
32648421--32648472	25	2.1	25	85	7	70	67	1	1	28	1.12
32652286--32652319	17	2.0	17	94	0	59	41	0	2	55	1.15
32652404--32652441	18	2.2	17	90	4	58	34	2	0	63	1.09
32652286--32652943	120	5.5	118	89	5	900	42	1	3	51	1.30
32652646--32652800	18	9.0	17	65	22	74	42	1	1	54	1.19
32652692--32652734	22	1.9	23	85	4	61	37	0	2	60	1.10
32652286--32652830	241	2.3	239	93	2	925	42	1	3	52	1.27
32652886--32652920	18	2.0	17	88	5	52	45	0	0	54	0.99
32652886--32652940	15	3.4	16	80	16	53	47	0	1	50	1.11
32652286--32652943	241	2.7	238	87	6	870	42	1	3	51	1.30
32653156--32653224	16	4.2	16	92	3	120	39	34	0	26	1.57
32653156--32653224	33	2.1	32	94	2	120	39	34	0	26	1.57
32653955--32653987	13	2.5	14	90	9	52	69	0	0	30	0.88
32655739--32655773	17	1.9	19	88	11	56	62	2	5	28	1.32
32656641--32656714	9	8.2	9	69	11	53	33	1	2	62	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32656784--32656817	17	2.1	16	88	5	50	35	0	0	64	0.94
32657245--32657303	31	1.9	31	85	0	82	32	16	16	33	1.92
32657580--32657640	25	2.4	26	81	13	74	31	3	1	63	1.20
32659456--32659519	18	3.4	19	79	14	71	35	0	4	59	1.18
32659450--32659533	19	4.5	20	68	19	65	36	0	3	59	1.15
32661988--32662017	3	10.0	3	100	0	60	0	33	0	66	0.92
32667007--32667101	46	2.1	46	100	0	190	38	14	6	40	1.72
32669913--32669990	38	2.1	38	97	0	147	28	20	8	42	1.82
32670072--32670273	45	4.6	44	74	15	179	29	27	17	25	1.98
32672879--32672982	24	4.4	23	77	9	79	33	16	24	25	1.96
32675979--32676089	43	2.5	44	83	1	143	32	14	26	27	1.95
32676112--32676222	48	2.5	43	77	12	107	27	15	22	34	1.94
32683692--32683731	21	1.9	21	94	0	71	62	0	10	27	1.27
32692148--32692255	43	2.5	43	81	0	108	35	15	19	29	1.93
32692244--32692335	48	1.9	48	86	0	130	28	15	23	32	1.95
32692193--32692345	48	3.3	47	73	8	127	29	15	21	33	1.94
32701293--32701402	43	2.6	43	86	4	159	26	10	24	38	1.88
32701304--32701417	43	2.6	42	82	10	124	25	11	26	36	1.90
32715324--32715428	42	2.5	42	78	10	106	26	18	24	30	1.98
32732701--32732766	32	2.1	32	97	0	123	39	30	9	21	1.84
32737047--32737156	54	2.0	55	96	1	204	28	21	16	33	1.95
32746851--32747020	46	3.6	48	79	11	167	23	31	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32746802--32747020	46	4.6	46	75	16	164	24	30	17	27	1.97
32751705--32751754	18	2.8	18	90	0	64	38	20	24	18	1.93
32752069--32752192	27	4.6	27	85	1	151	42	18	16	22	1.88
32754019--32754164	37	3.9	37	95	0	238	25	30	19	24	1.98
32754373--32754807	47	9.1	47	88	5	620	26	30	12	31	1.93
32754485--32754562	23	3.2	25	66	29	69	30	30	8	29	1.88
32754463--32754537	22	3.3	22	66	29	57	26	30	12	30	1.92
32756989--32757167	85	2.1	85	98	0	349	26	27	8	37	1.85
32761071--32761118	25	1.9	25	86	0	69	25	29	12	33	1.92
32761229--32761587	40	9.0	40	90	0	538	27	28	20	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362