Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  131  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43379764--43379847
44
1.9
44
97
0
159
36
25
5
32
1.80
43383103--43383143
20
2.0
20
90
0
64
39
19
2
39
1.65
43383241--43383298
25
2.3
25
77
8
64
27
18
24
29
1.98
43383280--43383393
24
4.8
24
79
5
135
35
14
22
26
1.93
43383278--43383393
47
2.5
47
85
2
153
36
15
22
25
1.94
43384577--43384603
8
3.4
8
100
0
54
74
0
0
25
0.83
43393950--43393974
11
2.3
11
100
0
50
72
0
0
28
0.86
43395923--43395966
20
2.3
19
88
7
63
27
0
20
52
1.47
43396836--43396904
22
3.1
22
68
24
63
47
13
15
23
1.80
43396753--43397055
45
6.7
45
82
4
290
39
14
21
25
1.91
43396793--43397057
91
2.9
90
81
5
300
38
15
21
24
1.92
43400947--43400976
12
2.5
12
94
0
51
53
0
10
36
1.35
43403070--43403568
47
10.6
47
93
0
827
29
29
8
32
1.87
43403120--43403198
25
3.3
25
66
16
76
31
29
5
34
1.79
43409004--43409037
12
3.0
12
91
8
54
41
0
14
44
1.45
43410190--43410262
26
2.8
25
78
15
85
31
16
10
41
1.83
43410411--43410446
6
6.0
6
96
0
63
16
30
0
52
1.44
43429560--43429596
19
1.9
19
89
10
58
37
2
13
45
1.58
43433142--43433178
13
2.9
14
88
11
53
70
5
0
24
1.08
43433156--43433199
22
2.0
21
91
4
70
72
0
0
27
0.85
43439081--43439511
224
1.9
224
96
0
790
35
19
10
34
1.87
43440689--43440904
46
4.6
46
77
9
197
29
17
28
24
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43440830--43440955
47
2.7
48
82
6
152
31
15
26
25
1.96
43462287--43462327
19
2.2
18
86
4
55
24
7
4
63
1.40
43463388--43463573
40
4.7
40
89
2
268
23
26
23
26
2.00
43464832--43464872
21
2.0
21
85
9
57
36
26
2
34
1.70
43464843--43464882
21
1.9
21
84
0
53
37
25
2
35
1.69
43467472--43467695
46
4.8
44
75
11
166
27
20
29
22
1.98
43467474--43467695
94
2.4
94
78
14
237
27
20
29
22
1.99
43471777--43471832
29
1.9
28
86
13
78
12
33
28
25
1.92
43478964--43478996
13
2.5
13
95
0
57
6
42
27
24
1.78
43481182--43481448
47
5.6
48
72
14
189
26
17
31
23
1.97
43483000--43483316
95
3.3
93
81
9
320
23
28
20
28
1.99
43482998--43483316
48
6.7
48
77
8
285
22
28
21
27
1.99
43484817--43484861
20
2.2
20
92
0
72
40
8
4
46
1.55
43487580--43487807
48
4.8
48
75
5
194
28
19
28
23
1.98
43487618--43487804
96
1.9
96
82
6
236
29
17
28
24
1.97
43490436--43490494
29
2.0
29
86
3
82
49
8
6
35
1.60
43491732--43491856
60
2.1
60
89
0
187
10
24
36
28
1.89
43495937--43495972
18
2.0
18
88
0
54
22
13
44
19
1.86
43498519--43498582
26
2.4
27
76
5
69
20
20
20
39
1.93
43501882--43501922
20
2.0
20
100
0
82
24
19
21
34
1.97
43514762--43514890
46
2.8
45
89
2
195
20
20
28
29
1.98
43518131--43518414
50
5.7
49
80
11
299
24
17
28
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43518120--43518409
101
2.9
100
89
3
440
24
17
29
28
1.97
43519692--43519867
50
3.5
49
80
7
176
28
27
17
25
1.98
43519692--43519878
101
1.9
99
85
4
259
28
28
17
25
1.98
43522648--43522691
15
2.9
15
77
12
54
11
15
15
56
1.66
43525129--43525257
46
2.8
46
89
2
179
19
21
29
29
1.98
43540965--43541047
41
2.0
41
90
0
130
31
36
16
15
1.91
43551821--43551915
27
3.6
27
80
10
115
15
20
22
42
1.89
43559350--43559421
26
2.7
26
83
14
78
34
23
11
30
1.90
43559539--43559638
27
3.7
26
80
9
110
17
23
22
38
1.93
43561316--43561507
41
4.7
41
80
7
187
22
15
5
56
1.59
43561316--43561494
81
2.2
80
81
8
202
24
15
5
55
1.60
43561356--43561509
81
1.9
82
87
4
231
20
15
7
55
1.65
43561356--43561529
41
4.3
40
77
13
142
21
16
6
54
1.65
43561651--43561731
41
2.0
41
92
0
135
33
6
22
38
1.79
43564028--43564132
23
4.5
24
75
7
83
22
20
18
39
1.93
43564067--43564134
22
3.0
21
81
8
82
25
23
17
33
1.96
43569184--43569502
47
6.8
47
72
16
189
23
28
19
28
1.98
43574549--43574656
43
2.5
43
86
3
128
28
13
21
36
1.92
43578671--43578738
33
2.1
33
97
0
127
38
14
16
30
1.89
43580475--43580651
39
4.5
40
77
6
132
28
27
20
23
1.99
43587865--43587984
50
2.4
51
92
2
206
37
15
22
24
1.93
43587969--43588055
31
2.8
30
89
6
129
26
19
28
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43588073--43588196
47
2.7
46
82
2
149
28
14
26
30
1.95
43588210--43588235
12
2.2
12
100
0
52
34
7
26
30
1.85
43588222--43588328
56
1.9
57
94
1
189
28
12
27
31
1.92
43588271--43588398
42
3.0
42
89
3
186
31
13
25
29
1.94
43592359--43592735
47
8.1
47
93
1
607
31
9
30
28
1.88
43592359--43592735
93
4.0
94
93
1
607
31
9
30
28
1.88
43592359--43592735
140
2.7
140
91
1
605
31
9
30
28
1.88
43592854--43592932
37
2.1
37
90
0
122
24
18
31
25
1.98
43594806--43594999
39
5.0
39
79
5
169
28
27
20
23
1.99
43601431--43601456
2
13.0
2
100
0
52
50
0
0
50
1.00
43608826--43608902
21
3.7
21
91
0
127
12
36
27
23
1.91
43618385--43618502
43
2.8
42
83
2
155
23
16
26
33
1.95
43623550--43623801
93
2.7
90
80
10
267
33
19
10
36
1.86
43624346--43624410
22
3.0
22
86
10
82
29
4
0
66
1.12
43624392--43624448
20
2.9
21
76
12
75
40
0
0
59
0.97
43626032--43626065
16
2.1
17
88
5
52
38
0
2
58
1.13
43626087--43626127
20
2.0
20
86
9
57
56
4
0
39
1.21
43629887--43629936
14
3.6
14
91
0
82
24
58
16
2
1.49
43631601--43631680
36
2.2
36
82
10
92
35
3
3
57
1.34
43631654--43631696
17
2.4
18
82
14
54
46
2
0
51
1.13
43633672--43633696
12
2.1
12
100
0
50
68
8
0
24
1.16
43633935--43633961
12
2.2
12
100
0
54
59
7
7
25
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43633973--43634010
17
2.2
18
86
13
53
73
0
5
21
1.02
43634984--43635021
19
1.9
19
94
5
67
18
5
23
52
1.65
43640000--43640052
23
2.3
23
86
3
70
47
22
7
22
1.76
43650463--43650539
31
2.3
34
85
12
99
37
5
3
53
1.42
43650541--43650565
12
2.1
12
100
0
50
52
0
0
48
1.00
43653940--43653973
16
2.1
17
88
5
52
47
0
26
26
1.53
43656641--43656763
42
2.9
42
80
4
140
32
24
17
25
1.97
43656641--43656767
43
3.0
43
78
10
143
33
24
17
25
1.96
43656641--43656803
43
3.8
42
78
9
116
32
25
15
26
1.96
43659929--43659979
21
2.4
22
83
3
59
27
5
1
64
1.27
43662537--43662719
46
4.0
45
73
7
163
25
28
17
28
1.97
43662537--43662710
94
1.9
92
81
4
215
24
28
17
28
1.98
43663039--43663098
30
2.0
30
83
0
75
33
25
11
30
1.91
43665823--43665855
7
5.0
7
89
10
52
57
0
0
42
0.98
43671336--43671371
18
2.0
18
100
0
72
55
5
5
33
1.46
43672499--43672533
11
3.2
11
91
0
52
22
0
11
65
1.24
43672500--43672537
14
2.7
14
91
0
58
21
0
10
68
1.19
43672748--43672779
11
3.0
11
95
4
57
75
0
0
25
0.81
43674525--43674793
46
5.8
46
73
14
230
21
20
29
28
1.98
43674521--43674786
93
2.9
93
92
0
442
21
20
29
28
1.98
43687383--43687443
30
2.0
30
83
0
77
31
22
8
37
1.84
43692234--43692356
46
2.7
46
97
2
230
32
29
15
22
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43692855--43692912
30
2.0
29
93
3
98
31
20
5
43
1.74
43695290--43695473
40
4.6
40
82
6
196
23
20
27
28
1.99
43695290--43695470
80
2.3
81
83
9
221
23
20
27
27
1.99
43695358--43695519
40
4.1
39
81
8
132
26
19
27
26
1.99
43703129--43703312
40
4.6
40
82
6
196
23
20
27
28
1.99
43703129--43703309
80
2.3
81
83
9
221
23
20
27
27
1.99
43703210--43703359
40
3.8
38
80
10
131
25
22
28
24
1.99
43705493--43705523
16
1.9
16
93
0
53
35
22
0
41
1.54
43705490--43705529
20
2.0
20
85
0
53
37
22
0
40
1.54
43712789--43712966
27
6.6
26
80
6
169
26
16
28
28
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362