Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  317  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105849176--105849231
27
2.1
27
86
0
76
33
1
3
60
1.24
105850793--105850851
31
1.9
31
85
0
82
45
15
10
28
1.78
105853333--105853391
29
2.0
29
100
0
118
45
23
6
23
1.76
105853596--105853641
22
2.1
22
84
8
58
47
0
0
52
1.00
105853598--105853646
21
2.4
21
83
12
66
46
0
0
53
1.00
105856355--105856396
22
1.9
22
90
9
68
14
14
30
40
1.85
105867158--105867229
24
3.0
24
95
0
135
44
8
18
29
1.78
105870544--105870615
20
3.5
20
78
10
81
27
0
22
50
1.50
105872412--105872443
12
2.6
13
90
9
50
50
21
6
21
1.71
105882869--105882904
16
2.2
17
95
5
65
66
0
0
33
0.92
105882955--105883021
32
2.0
33
88
5
100
59
0
2
37
1.13
105885069--105885108
21
1.9
21
89
0
62
40
7
2
50
1.44
105888051--105888105
28
2.0
27
85
3
74
67
5
7
20
1.35
105896103--105896261
49
3.3
49
89
0
221
25
25
6
42
1.80
105898499--105898536
3
12.7
3
94
0
67
34
2
0
63
1.09
105901506--105901535
3
10.0
3
92
0
51
63
0
3
33
1.11
105901635--105901716
3
27.3
3
75
9
78
62
4
1
31
1.24
105903533--105903706
57
3.1
55
91
4
287
36
17
15
31
1.91
105903878--105903907
13
2.3
13
94
0
51
66
10
13
10
1.44
105903644--105904136
177
2.8
171
83
4
596
36
17
17
29
1.92
105910898--105910941
21
2.0
22
82
4
54
63
4
0
31
1.14
105911258--105911331
3
24.3
3
75
8
69
62
5
1
31
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105917300--105917337
5
7.6
5
93
0
58
47
0
0
52
1.00
105917663--105917696
9
3.7
9
88
7
50
38
0
2
58
1.13
105917776--105917810
4
8.2
4
87
12
52
74
0
25
0
0.82
105917718--105917812
18
5.2
17
74
13
66
68
3
25
3
1.19
105918199--105918250
11
4.5
11
81
11
50
57
0
13
28
1.36
105918204--105918244
12
3.5
11
90
6
55
56
0
17
26
1.41
105918984--105919104
47
2.5
46
72
7
109
22
20
23
33
1.97
105921324--105921370
24
1.9
25
86
4
69
57
0
8
34
1.29
105921812--105921874
30
2.1
30
96
0
117
15
41
22
20
1.90
105928984--105929014
3
10.3
3
100
0
62
67
0
0
32
0.91
105944619--105944648
14
2.1
14
93
0
51
30
3
3
63
1.27
105947813--105947877
33
2.0
33
90
0
103
21
10
32
35
1.88
105947860--105947953
16
5.8
16
71
13
75
23
8
34
34
1.85
105947823--105947952
33
3.9
33
75
7
104
23
9
32
34
1.87
105951814--105951862
20
2.5
20
86
0
71
51
0
4
44
1.20
105951973--105952010
14
2.7
15
88
8
53
42
2
2
52
1.29
105955968--105956009
7
5.2
8
81
18
52
64
0
0
35
0.94
105955973--105956017
10
5.0
10
84
15
55
66
0
0
33
0.92
105955968--105956017
25
2.0
25
100
0
100
64
0
0
36
0.94
105955968--105956001
18
1.9
18
94
5
61
64
0
0
35
0.94
105956939--105956986
21
2.2
22
82
10
55
56
4
4
35
1.38
105957341--105957373
14
2.3
15
89
5
50
24
3
15
57
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105957466--105957541
29
2.7
28
87
4
107
38
9
19
32
1.84
105963963--105964088
50
2.5
50
84
3
148
30
27
15
26
1.96
105966546--105966718
43
4.0
42
74
11
127
34
26
16
23
1.95
105967241--105967279
19
2.0
20
85
9
55
48
23
2
25
1.63
105968358--105968390
11
2.9
11
95
4
57
69
0
0
30
0.88
105970440--105970518
39
2.1
38
95
2
140
20
41
22
15
1.89
105973203--105973255
27
2.0
27
88
7
81
56
0
7
35
1.28
105973209--105973263
27
2.1
26
86
3
74
58
1
5
34
1.32
105978464--105978550
11
7.9
11
67
10
52
37
19
0
42
1.52
105978754--105978807
26
2.1
26
100
0
108
18
7
12
61
1.54
105980394--105980435
18
2.3
18
91
0
66
21
28
7
42
1.79
105982961--105983055
27
3.5
26
84
8
136
40
18
22
18
1.92
105982961--105983072
54
2.1
54
89
3
172
37
20
23
18
1.94
105983179--105983240
26
2.3
26
83
2
70
29
8
25
37
1.85
105984477--105984526
25
2.0
26
96
4
93
20
38
6
36
1.77
105984477--105984540
25
2.6
25
87
5
76
17
40
4
37
1.70
105986820--105987052
126
1.8
126
93
1
405
25
20
20
34
1.96
105986976--105987127
77
2.0
78
92
1
252
19
20
23
36
1.95
105987629--105987674
21
2.1
23
88
8
69
45
34
0
19
1.51
105988589--105988622
18
1.9
17
88
5
50
41
8
8
41
1.67
105994552--105994602
3
17.3
3
80
11
61
64
0
35
0
0.94
105995151--105995289
59
2.4
59
92
0
233
35
12
20
30
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105995725--105995764
21
1.9
21
89
0
62
12
22
30
35
1.91
105996428--105996605
43
4.2
43
86
2
229
44
19
7
28
1.78
105998333--105998453
47
2.5
48
91
1
199
46
17
10
25
1.80
105998490--105998585
6
16.0
6
78
0
84
56
14
6
22
1.61
105998488--105998585
36
2.7
37
79
3
101
55
15
6
23
1.63
105998597--105998643
12
3.9
12
85
0
58
57
8
10
23
1.60
105999093--105999132
21
1.9
21
94
0
71
27
30
15
27
1.96
106006019--106006054
13
2.8
14
84
16
51
27
25
0
47
1.52
106006006--106006046
18
2.2
19
87
12
59
29
24
0
46
1.53
106006210--106006294
21
4.0
21
76
4
80
40
24
20
15
1.91
106006665--106006736
15
4.7
15
85
3
90
52
11
0
36
1.37
106006668--106006728
30
2.1
28
93
6
104
55
11
0
32
1.36
106006887--106006920
2
17.5
2
87
6
52
50
0
0
50
1.00
106006930--106006968
16
2.5
17
80
19
50
48
17
0
33
1.48
106008402--106008520
40
3.0
40
81
3
125
26
21
25
26
1.99
106009663--106009714
25
2.1
24
82
3
59
38
3
3
53
1.37
106012057--106012228
46
3.7
45
74
13
170
23
20
26
29
1.99
106012050--106012220
93
1.8
93
91
0
279
23
21
26
28
1.99
106013975--106014026
21
2.5
21
80
0
59
21
1
32
44
1.63
106014148--106014185
19
2.0
20
89
5
60
18
0
34
47
1.49
106015980--106016048
24
2.8
24
71
18
70
40
4
8
46
1.55
106017624--106017758
70
1.9
70
89
3
209
37
13
13
36
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106018911--106019027
9
12.3
9
77
10
117
45
22
0
31
1.58
106018917--106018994
39
2.0
39
97
0
147
46
21
0
32
1.52
106018913--106019025
57
2.0
57
89
0
172
46
23
0
30
1.58
106018912--106019023
39
2.9
36
80
18
129
46
22
0
30
1.58
106019482--106019519
20
1.9
20
88
0
58
28
34
15
21
1.94
106025292--106025336
21
2.1
21
91
0
72
28
20
51
0
1.48
106025647--106025790
41
3.4
42
78
6
121
32
20
19
27
1.97
106025689--106025780
43
2.1
45
84
8
118
30
18
20
30
1.96
106029566--106029643
38
2.1
38
97
0
147
48
8
5
37
1.57
106031227--106031294
9
7.6
9
81
0
73
42
17
8
30
1.80
106031227--106031294
18
3.8
18
80
7
84
42
17
8
30
1.80
106031314--106031354
6
6.5
6
83
10
55
17
0
4
78
0.93
106039749--106039786
17
2.4
17
91
8
62
55
0
13
31
1.38
106042969--106042993
10
2.5
10
100
0
50
8
20
32
40
1.81
106043882--106043915
16
2.1
17
89
10
54
61
0
2
35
1.11
106043898--106043959
22
2.8
22
85
4
72
56
0
1
41
1.09
106043898--106043938
22
1.9
22
95
5
75
56
0
2
41
1.13
106044260--106044296
18
2.0
19
89
5
58
48
0
0
51
1.00
106044526--106044603
19
3.9
19
81
8
66
39
3
2
53
1.33
106044554--106044603
10
4.9
10
82
4
64
44
0
0
56
0.99
106044554--106044603
21
2.4
21
90
3
75
44
0
0
56
0.99
106044554--106044622
31
2.2
30
84
5
93
46
1
0
52
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106052295--106052358
29
2.3
27
84
12
78
26
1
1
70
1.05
106060995--106061261
104
2.6
104
93
1
455
18
20
30
29
1.97
106064126--106064158
10
3.4
10
91
8
59
36
0
0
63
0.95
106064127--106064162
9
4.0
9
92
7
56
44
0
0
55
0.99
106064247--106064289
22
1.9
22
85
4
59
72
0
4
23
1.04
106075040--106075070
12
2.6
12
94
0
53
67
3
0
29
1.06
106076005--106076037
17
2.0
17
94
5
59
36
12
30
21
1.90
106076023--106076127
53
2.0
53
90
0
165
30
15
24
29
1.95
106078578--106078608
14
2.2
14
94
0
53
38
9
19
32
1.84
106078981--106079005
13
1.9
13
100
0
50
16
28
16
40
1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362