Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  11  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3687705--3688155
135
3.5
128
74
10
322
29
23
21
25
1.99
3687948--3688109
86
1.9
87
88
6
249
30
24
20
24
1.99
3688451--3688495
21
2.1
21
100
0
90
0
57
17
24
1.40
3689053--3689090
19
2.1
18
85
9
51
52
0
7
39
1.31
3694641--3694680
21
1.9
21
94
0
71
47
12
10
30
1.74
3696614--3697131
133
3.9
133
99
0
1018
51
18
9
20
1.74
3700869--3700944
39
2.0
38
85
7
102
40
23
5
30
1.77
3701124--3701455
41
8.1
40
85
4
394
18
22
22
35
1.96
3701905--3701948
23
2.0
22
86
4
61
45
13
20
20
1.85
3705448--3705907
27
17.0
27
85
0
560
40
20
6
31
1.79
3705457--3705991
27
19.8
27
81
4
458
40
20
7
31
1.81
3706025--3706106
27
3.1
27
91
1
130
34
19
21
24
1.97
3708185--3708230
16
2.9
16
78
15
51
78
4
2
15
1.01
3707923--3708434
280
1.8
280
92
0
864
50
11
9
27
1.70
3708806--3708867
19
3.2
19
90
4
97
35
9
19
35
1.85
3715294--3716001
44
16.1
44
74
9
541
32
17
23
27
1.97
3715286--3716004
132
5.4
132
93
0
1141
31
17
23
27
1.97
3716575--3716672
19
5.2
19
92
7
164
37
10
16
35
1.82
3716565--3716672
36
2.9
35
78
20
112
37
10
15
36
1.82
3719704--3719743
12
3.3
12
89
0
62
10
27
40
22
1.86
3727526--3727550
6
4.2
6
100
0
50
48
0
0
52
1.00
3731020--3731069
12
3.9
13
79
10
59
34
2
0
64
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3731038--3731083
21
2.2
21
88
7
67
34
4
0
60
1.16
3731079--3731115
19
1.9
19
88
0
56
35
5
2
56
1.36
3731620--3731775
71
2.3
67
84
9
199
30
6
11
51
1.63
3739092--3739255
46
3.6
46
86
1
222
20
24
14
40
1.90
3739202--3739273
35
2.2
33
79
15
87
22
23
19
34
1.96
3739219--3739290
35
2.1
35
97
0
135
23
22
19
34
1.96
3741238--3741278
20
2.0
21
90
4
66
0
24
0
75
0.80
3746961--3747758
44
18.1
44
88
1
1107
31
15
26
26
1.95
3746961--3747852
132
6.8
132
84
3
735
30
15
27
27
1.96
3749311--3749360
12
3.9
13
79
10
59
34
2
0
64
1.05
3749329--3749374
21
2.2
21
88
7
67
34
4
0
60
1.16
3749908--3750063
71
2.3
69
83
9
194
28
6
12
52
1.63
3753937--3753966
16
1.9
15
93
6
51
6
20
20
53
1.67
3762905--3762942
5
7.8
5
94
5
69
18
0
0
81
0.69
3762905--3762941
14
2.6
14
95
4
65
18
0
0
81
0.70
3762906--3762942
19
1.9
19
100
0
74
18
0
0
81
0.70
3767289--3767320
5
6.6
5
92
7
57
18
0
0
81
0.70
3767289--3767319
9
3.3
9
91
8
53
19
0
0
80
0.71
3774634--3774676
19
2.4
19
88
7
63
37
13
11
37
1.82
3774642--3774678
19
1.9
19
100
0
74
37
10
16
35
1.83
3775678--3775728
20
2.4
21
87
6
68
62
3
5
27
1.36
3789640--3789702
23
2.8
22
83
9
65
63
3
4
28
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3838361--3838544
40
4.6
39
81
7
194
25
21
27
25
2.00
3838407--3838544
39
3.5
39
86
4
179
26
20
27
26
1.99
3838414--3838577
79
2.1
78
82
5
197
26
19
27
26
1.99
3853380--3853445
6
11.0
6
83
6
80
18
3
1
77
0.98
3854817--3855043
112
2.0
112
99
0
445
31
14
20
33
1.93
3859434--3859460
14
1.9
14
100
0
54
59
11
7
22
1.56
3859818--3859843
13
2.0
13
100
0
52
15
38
30
15
1.88
3862468--3862568
39
2.6
39
87
0
148
13
25
22
37
1.92
3862486--3862550
19
3.2
21
67
20
57
13
24
20
41
1.88
3863254--3863282
3
10.0
3
92
7
51
68
0
0
31
0.89
3865671--3865710
21
1.9
21
89
0
62
47
17
7
27
1.74
3866341--3866380
14
2.9
14
80
0
53
27
10
30
32
1.89
3870153--3870201
18
2.7
18
93
0
80
36
0
8
55
1.30
3870155--3870202
3
16.0
3
82
0
60
35
0
6
58
1.23
3870155--3870202
12
4.0
12
91
0
69
35
0
6
58
1.23
3870343--3870400
24
2.5
22
78
13
62
46
0
22
31
1.52
3870559--3870654
39
2.5
39
80
6
108
20
23
28
27
1.99
3872961--3873090
50
2.6
49
84
3
163
29
26
17
26
1.98
3876255--3876301
25
1.9
25
86
4
69
23
10
10
55
1.65
3879944--3880018
27
2.7
27
89
6
105
48
0
1
50
1.09
3891903--3891941
16
2.4
17
86
4
53
17
2
5
74
1.12
3891943--3891981
20
1.9
21
85
15
55
35
0
5
58
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3892535--3892583
21
2.2
24
79
17
61
34
0
4
61
1.15
3899815--3899879
30
2.2
29
97
2
121
23
16
24
35
1.95
3907265--3907314
25
2.0
25
100
0
100
20
12
28
40
1.87
3910731--3910784
20
2.7
20
75
11
56
46
1
0
51
1.11
3914324--3914359
19
1.9
18
88
5
54
27
0
0
72
0.85
3914511--3914551
21
1.9
22
90
5
66
24
36
17
21
1.94
3915106--3915182
40
1.9
40
94
0
136
35
5
22
37
1.76
3916682--3916734
26
2.0
25
82
13
63
39
22
11
26
1.88
3922073--3922149
40
1.9
40
97
0
145
33
5
23
37
1.77
3932655--3932738
26
3.1
26
75
12
80
61
4
8
25
1.44
3933368--3933499
27
5.0
27
72
9
83
54
3
6
35
1.42
3933520--3933585
25
2.6
26
83
9
75
63
1
3
31
1.19
3942167--3942209
15
2.8
16
82
3
52
72
23
0
4
1.04
3942417--3942475
23
2.6
22
76
21
59
69
23
1
5
1.18
3942417--3942645
19
11.4
20
73
21
78
77
15
0
6
1.00
3942475--3942626
5
31.2
5
74
19
83
81
12
0
5
0.86
3942327--3942658
89
3.9
84
76
13
229
77
13
0
7
1.03
3942408--3942626
94
2.4
90
78
12
211
78
15
0
5
0.95
3942327--3942620
83
3.4
83
70
21
223
77
14
1
7
1.02
3942497--3942624
1
128.0
1
71
0
67
83
10
0
6
0.80
3942491--3942656
9
18.2
9
72
14
85
81
10
0
8
0.88
3942931--3943018
17
4.8
18
69
22
58
77
12
1
9
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3942933--3943421
14
32.8
14
67
17
118
77
12
1
9
1.04
3942951--3943001
18
2.8
17
85
14
59
78
9
1
9
1.04
3942936--3943021
40
2.2
40
83
10
106
79
10
1
9
1.00
3942991--3943407
16
26.4
15
66
23
109
77
12
0
9
1.02
3943056--3943221
55
2.9
56
75
10
169
80
9
1
9
0.97
3943083--3943131
1
49.0
1
85
0
62
91
4
0
4
0.49
3943139--3943419
41
6.7
41
67
19
143
77
12
0
9
1.04
3943269--3943303
10
3.3
10
85
14
52
77
11
0
11
1.00
3943325--3943421
11
8.5
12
68
26
52
81
10
1
7
0.92
3943063--3943396
89
3.8
83
75
19
249
77
11
0
9
1.00
3943368--3943429
12
5.0
13
75
16
60
82
12
1
3
0.87
3943481--3943641
19
7.5
21
70
19
68
76
13
1
9
1.08
3943482--3943545
23
2.9
22
80
17
78
76
17
1
4
1.03
3943528--3943664
41
3.4
38
80
11
130
78
10
1
9
1.04
3943563--3943722
19
7.9
18
67
22
70
77
11
1
10
1.05
3943594--3943663
1
70.0
1
76
0
50
85
7
1
5
0.79
3943569--3943770
23
9.5
21
73
17
116
78
12
1
7
1.03
3943572--3943812
16
14.4
16
73
16
104
78
12
1
7
1.04
3943570--3943812
18
12.4
18
70
21
102
78
12
1
7
1.04
3943568--3943799
84
2.8
82
75
18
232
78
12
1
7
1.03
3943568--3943751
43
4.4
39
73
14
122
78
11
1
8
1.03
3943484--3943746
124
2.1
129
80
13
296
76
13
1
8
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3943557--3943697
41
3.4
40
72
20
119
78
10
1
9
1.04
3943711--3943799
26
3.3
26
81
9
81
80
13
2
3
0.93
3943685--3943813
46
2.9
44
76
11
113
76
15
1
6
1.05
3943568--3943770
22
9.5
22
72
15
92
78
12
1
7
1.02
3943710--3943813
12
8.5
12
70
20
65
79
14
1
3
0.95
3943823--3943873
23
2.3
22
81
18
61
76
13
0
9
1.02
3943878--3944577
203
3.4
207
90
3
1084
30
17
23
28
1.97
3944963--3945053
19
4.9
19
88
8
143
37
10
15
36
1.83
3944984--3945039
18
3.5
15
81
18
60
37
10
16
35
1.83
3944971--3945060
35
2.5
37
87
10
134
37
11
15
35
1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362