Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  320  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106653532--106653566
18
2.1
17
89
10
54
45
0
17
37
1.48
106655485--106655568
28
3.0
28
87
1
114
17
5
30
45
1.73
106655773--106655859
21
4.0
23
75
13
85
16
22
25
35
1.94
106657381--106657448
31
2.2
31
97
0
127
42
0
22
35
1.54
106658986--106659020
18
2.1
17
89
10
54
45
0
17
37
1.48
106661685--106661719
12
2.9
12
95
0
61
51
11
17
20
1.75
106667627--106667751
60
2.1
60
100
0
250
23
18
24
34
1.96
106668935--106668991
29
1.9
30
96
3
107
49
0
17
33
1.47
106669200--106669244
23
1.9
24
90
4
74
40
0
0
60
0.97
106669199--106669247
11
4.4
11
80
14
64
40
0
0
59
0.98
106670742--106670798
27
2.1
27
100
0
114
29
3
14
52
1.58
106671063--106671095
9
3.7
9
95
0
57
36
0
0
63
0.95
106671064--106671111
9
4.7
11
87
12
52
37
0
0
62
0.95
106677330--106677367
13
3.2
12
82
10
51
36
26
0
36
1.57
106678333--106678436
24
4.2
25
78
12
101
27
18
24
29
1.98
106678353--106678470
24
4.8
24
74
14
89
32
16
23
27
1.96
106678374--106678470
48
2.0
50
82
15
123
35
16
23
24
1.95
106982339--106982390
27
1.9
27
92
0
86
23
23
36
17
1.95
107001181--107001365
84
2.2
84
90
3
293
53
2
19
24
1.56
107001228--107001363
37
3.4
37
66
18
101
53
1
18
26
1.53
107001670--107001708
19
2.1
18
90
4
60
10
17
0
71
1.12
107002151--107002217
26
2.5
27
82
2
82
34
7
23
34
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107002181--107002215
14
2.6
14
90
4
54
28
8
22
40
1.84
107004091--107004130
20
2.0
21
90
5
64
47
5
2
45
1.38
107011500--107011571
16
4.5
15
84
3
63
40
6
23
29
1.81
107013788--107013837
26
1.9
26
84
8
66
36
8
0
56
1.29
107016908--107016972
32
2.0
32
93
0
112
15
23
7
53
1.67
107017174--107017200
12
2.2
12
100
0
54
59
33
0
7
1.25
107020192--107020297
40
2.7
40
92
0
176
48
5
37
8
1.57
107021389--107021897
46
11.0
46
92
1
707
22
24
13
39
1.90
107024027--107024076
21
2.5
20
84
9
75
46
4
0
50
1.20
107042947--107043122
46
3.8
46
77
15
191
21
19
29
29
1.98
107049283--107049369
21
4.0
23
77
10
92
14
19
25
40
1.90
107056653--107056688
19
2.0
19
89
10
58
66
5
0
27
1.13
107057404--107057450
24
2.0
24
82
0
58
27
4
2
65
1.22
107067258--107067330
10
7.1
10
75
14
60
31
1
2
64
1.16
107067258--107067323
32
2.1
31
83
8
80
28
1
3
66
1.15
107067332--107067369
20
2.0
20
89
5
60
34
0
10
55
1.34
107069102--107069277
79
2.2
79
89
0
262
40
13
7
38
1.74
107073798--107073947
42
3.6
42
81
1
158
30
28
17
24
1.97
107078604--107078689
7
12.0
7
87
4
73
38
0
3
58
1.15
107078609--107078742
22
5.7
22
74
13
83
35
0
3
61
1.14
107078657--107078744
9
10.6
9
76
21
70
34
0
2
63
1.07
107079404--107079586
21
8.6
21
68
9
66
44
32
1
21
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107079404--107079600
14
13.9
14
69
10
96
45
31
1
21
1.59
107079839--107079868
15
2.0
15
93
0
51
43
36
0
20
1.52
107079693--107079827
7
19.0
7
74
11
87
40
38
0
20
1.53
107080290--107080322
12
2.8
12
90
4
50
45
33
12
9
1.73
107084974--107085250
135
2.0
138
92
2
461
45
5
9
40
1.59
107085226--107085372
75
2.0
76
90
5
237
32
10
8
48
1.68
107095300--107095366
32
2.1
32
94
0
116
22
11
19
46
1.82
107095553--107095599
3
15.7
3
90
0
76
2
0
27
70
0.99
107097770--107097796
2
13.5
2
100
0
54
48
0
0
51
1.00
107098042--107098085
22
2.0
22
82
8
54
38
4
9
47
1.56
107099411--107099448
20
1.9
20
88
0
58
73
0
10
15
1.09
107104695--107104756
27
2.3
27
91
2
97
53
8
14
24
1.68
107104727--107104879
81
1.9
81
98
0
297
42
7
16
33
1.75
107108331--107108610
138
2.0
138
94
0
488
43
6
9
40
1.62
107108586--107108732
75
1.9
76
93
1
251
31
12
10
44
1.77
107112085--107112123
11
3.5
11
89
3
51
79
2
5
12
1.00
107112092--107112135
17
2.5
18
85
3
54
77
0
6
15
0.97
107114399--107114455
25
2.3
25
79
8
64
50
7
3
38
1.46
107124353--107124435
34
2.4
35
81
15
86
26
10
31
31
1.90
107130755--107130784
13
2.4
13
94
5
53
50
3
0
46
1.18
107132492--107132525
17
2.1
17
94
5
61
58
0
0
41
0.98
107135596--107135660
15
4.5
15
76
19
59
0
12
13
73
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107135611--107135648
19
2.1
17
90
9
58
0
7
15
76
1.01
107135851--107135885
15
2.2
16
90
5
54
25
8
8
57
1.57
107136119--107136982
44
18.6
44
69
13
221
27
20
19
31
1.97
107136445--107136993
51
11.7
51
70
18
361
27
20
19
32
1.97
107136477--107136949
140
3.4
140
90
0
757
27
20
19
32
1.97
107136445--107136981
191
2.9
185
79
10
465
27
21
19
31
1.97
107138230--107138269
14
2.7
14
92
7
62
2
22
0
75
0.93
107142758--107142830
22
3.2
22
77
11
67
60
2
6
30
1.37
107142954--107142980
9
3.0
9
100
0
54
77
0
0
22
0.76
107143863--107143927
14
4.5
13
78
16
58
3
10
12
73
1.20
107145772--107145819
23
2.0
24
88
4
71
29
12
10
47
1.74
107149427--107149460
14
2.4
14
95
0
59
17
5
0
76
0.98
107149503--107149568
33
2.0
33
91
5
107
42
0
0
57
0.98
107149534--107149586
21
2.6
21
90
3
81
41
0
0
58
0.98
107149650--107149709
17
3.4
17
78
13
66
41
1
0
56
1.09
107149657--107149701
20
2.2
21
84
7
58
42
2
0
55
1.12
107149641--107149709
27
2.6
26
78
17
70
40
1
0
57
1.07
107149745--107149790
23
2.0
23
91
4
76
45
4
2
47
1.34
107149674--107149800
57
2.2
59
87
11
181
40
3
3
53
1.33
107150615--107150728
33
3.5
32
76
9
113
28
11
25
34
1.91
107154116--107154189
29
2.5
29
82
8
87
59
2
8
29
1.40
107154191--107154237
15
3.5
15
72
27
59
19
17
0
63
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107154188--107154237
25
2.0
25
100
0
100
20
16
0
64
1.30
107161185--107161234
17
2.9
16
77
16
55
22
4
0
74
0.99
107164863--107164898
16
2.2
16
100
0
72
16
19
22
41
1.90
107171954--107172021
32
2.1
32
100
0
136
35
8
14
41
1.77
107179525--107179563
20
2.0
19
85
5
51
61
17
0
20
1.34
107181419--107181458
17
2.4
17
86
0
53
27
2
0
70
1.01
107181390--107181455
30
2.1
32
83
10
84
30
1
1
66
1.10
107186610--107186668
29
2.0
29
87
12
86
33
27
16
22
1.95
107195914--107195955
16
2.6
17
82
14
54
38
23
4
33
1.76
107199295--107199330
17
2.1
17
94
0
63
38
0
8
52
1.32
107201893--107201921
12
2.3
13
94
5
51
65
3
0
31
1.09
107209197--107209332
41
3.4
41
74
9
147
33
26
16
23
1.96
107216542--107216594
21
2.5
21
87
6
81
30
30
7
32
1.85
107219272--107219309
6
6.7
6
96
3
62
15
55
28
0
1.41
107219382--107219462
40
2.0
40
85
0
108
62
9
2
24
1.38
107219448--107219526
20
4.2
19
73
13
58
65
0
2
31
1.06
107219484--107219529
23
2.0
22
87
4
65
71
0
0
28
0.86
107229376--107229426
26
2.0
26
85
7
70
60
3
0
35
1.15
107237318--107237358
14
3.0
13
86
10
55
46
0
9
43
1.36
107242717--107242777
30
2.0
30
96
0
113
32
4
9
52
1.56
107245323--107245377
24
2.3
24
81
12
60
10
7
9
72
1.27
107250498--107250547
24
2.0
25
88
3
75
48
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107251167--107251211
14
3.5
14
71
22
53
60
6
6
26
1.47
107251165--107251210
24
1.9
24
100
0
92
58
6
8
26
1.52
107251166--107251220
24
2.3
24
90
0
83
58
5
5
30
1.44
107261961--107262018
30
1.9
30
96
0
107
29
27
20
22
1.99
107267025--107267097
26
2.7
26
73
25
62
58
4
2
34
1.31
107274469--107274513
20
2.3
20
85
11
58
62
2
11
24
1.40
107285140--107285290
29
5.3
29
78
10
143
26
13
31
28
1.94
107285895--107285925
5
6.2
5
96
0
53
19
22
22
35
1.96
107288938--107289049
51
2.2
51
93
0
188
28
24
16
31
1.96
107296684--107296844
51
3.2
51
95
0
268
29
22
14
32
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362