Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  332  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110760079--110760109
16
1.9
16
93
0
53
41
0
22
35
1.54
110770033--110770070
12
3.2
12
85
3
51
28
0
2
68
1.03
110774068--110774092
12
2.1
12
100
0
50
60
8
0
32
1.26
110777151--110777229
39
2.1
37
81
13
90
40
12
7
39
1.72
110777191--110777281
17
5.2
17
73
5
92
47
10
10
30
1.73
110777191--110777302
35
3.1
35
78
5
118
47
10
11
30
1.74
110777190--110777302
18
6.3
18
73
10
97
46
10
11
30
1.74
110777477--110777523
20
2.5
19
77
16
53
44
8
17
29
1.78
110777886--110777976
8
11.0
8
75
15
87
0
18
0
81
0.69
110777885--110777965
18
4.6
17
80
13
101
0
17
0
82
0.66
110777887--110777974
26
3.2
26
78
13
97
0
18
0
81
0.68
110778092--110778159
15
4.5
15
75
10
50
1
10
22
66
1.30
110778293--110778327
3
11.3
3
87
6
52
2
28
0
68
1.04
110778392--110778442
17
3.1
17
81
18
56
0
31
0
68
0.90
110778688--110778804
30
3.9
29
77
11
94
44
3
22
29
1.69
110778703--110778804
30
3.4
30
84
2
134
44
3
22
29
1.71
110778803--110778835
14
2.3
15
89
5
50
24
0
3
72
0.98
110779076--110779187
54
2.1
55
91
1
181
36
16
16
29
1.92
110779166--110779199
14
2.4
14
90
0
50
58
2
17
20
1.51
110778991--110779267
142
1.9
142
80
11
325
35
18
16
29
1.93
110779131--110779536
85
4.6
87
81
11
465
37
17
17
27
1.93
110779131--110779537
175
2.3
173
84
8
547
37
17
17
27
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110779482--110780281
192
4.2
191
96
1
1480
34
20
13
30
1.92
110789986--110790096
34
3.2
34
77
6
109
51
10
9
27
1.69
110789986--110790096
17
6.5
17
72
11
84
51
10
9
27
1.69
110790641--110790729
8
12.0
8
77
13
84
0
19
0
80
0.70
110790641--110790726
21
4.0
22
83
6
97
0
18
0
81
0.69
110790653--110790731
29
2.7
29
78
9
97
0
21
0
78
0.75
110790645--110790729
37
2.3
37
88
9
122
0
20
0
80
0.72
110790641--110790726
14
5.9
14
81
15
95
0
18
0
81
0.69
110790997--110791033
3
12.0
3
88
5
56
2
29
0
67
1.04
110790990--110791032
16
2.8
16
89
3
61
2
25
0
72
0.97
110791096--110791140
17
2.5
19
76
23
53
0
26
0
73
0.84
110791355--110791472
29
4.1
28
79
9
114
44
3
20
32
1.68
110791790--110792150
83
4.3
83
82
12
424
37
19
16
26
1.93
110791846--110792234
84
4.7
82
79
12
266
36
20
16
26
1.93
110792322--110792488
66
2.5
69
84
6
204
31
22
14
31
1.94
110792388--110792609
117
1.9
121
83
5
292
33
21
14
30
1.93
110792455--110792555
50
2.0
50
82
3
123
41
18
11
27
1.86
110792505--110792687
69
2.6
68
82
5
206
34
21
14
29
1.92
110792574--110792799
121
1.9
121
84
3
303
34
20
14
30
1.92
110792161--110792868
190
3.8
186
94
4
1215
35
20
13
30
1.92
110801044--110801184
18
8.2
17
75
15
121
48
10
11
29
1.73
110801043--110801205
35
4.7
35
80
6
170
47
10
11
30
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110801043--110801209
17
9.5
17
77
12
142
48
10
11
29
1.73
110801164--110801584
217
1.9
218
81
8
502
36
11
12
38
1.80
110801379--110801423
20
2.2
20
88
7
65
40
8
15
35
1.79
110801365--110801423
20
2.8
19
82
14
64
44
10
13
32
1.77
110801789--110801883
8
12.0
8
79
10
97
2
17
0
80
0.82
110801805--110801881
30
2.6
30
87
0
100
1
19
0
79
0.81
110801784--110801881
15
6.6
15
78
17
89
2
18
0
79
0.83
110801976--110802028
15
3.6
14
78
19
54
0
11
20
67
1.21
110801976--110802062
16
5.5
15
76
12
77
1
9
21
67
1.25
110801976--110802078
31
3.3
29
80
16
100
0
7
21
69
1.19
110802019--110802079
15
3.6
16
76
23
63
1
3
19
75
1.03
110802197--110802237
3
13.3
3
94
5
73
0
31
0
68
0.90
110802303--110802352
10
5.2
10
80
7
59
0
30
0
70
0.88
110802307--110802349
19
2.3
19
88
11
63
0
30
0
69
0.88
110802616--110802716
30
3.4
30
83
6
127
46
3
20
28
1.69
110802712--110802746
14
2.4
15
90
4
54
28
0
2
68
1.04
110805301--110805357
29
2.0
29
100
0
114
52
3
10
33
1.53
110820903--110821001
44
2.2
43
81
10
110
31
6
27
35
1.81
110821108--110821233
58
2.2
58
84
2
173
52
3
0
43
1.22
110824669--110824767
50
2.0
50
87
0
144
40
11
16
32
1.83
110832132--110832219
44
2.0
44
100
0
176
45
15
9
29
1.77
110833658--110833735
38
2.1
38
95
0
138
44
15
10
29
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110838975--110839066
37
2.5
37
89
5
132
50
1
4
44
1.29
110841622--110841674
21
2.5
21
84
6
63
20
32
33
13
1.91
110842747--110842813
25
2.7
25
86
4
82
31
22
23
22
1.98
110843910--110843934
11
2.3
11
100
0
50
64
0
0
36
0.94
110844478--110844502
11
2.3
11
100
0
50
28
0
0
72
0.86
110852403--110852455
27
2.0
27
96
0
97
52
16
7
22
1.69
110856745--110856868
63
2.0
63
98
0
239
38
4
3
53
1.39
110864132--110864178
21
2.2
22
88
3
69
19
31
19
29
1.96
110868804--110868828
13
1.9
13
100
0
50
40
8
8
44
1.63
110869115--110869149
18
2.0
17
88
5
52
54
5
2
37
1.39
110869361--110869407
20
2.3
21
85
10
62
36
0
40
23
1.55
110873312--110873379
14
4.9
14
74
16
52
69
5
4
20
1.28
110873326--110873381
22
2.5
22
88
0
76
71
5
5
17
1.24
110873314--110873381
11
6.2
11
80
0
64
70
5
4
19
1.25
110876560--110876598
21
1.9
20
89
5
60
71
2
20
5
1.17
110884898--110884926
8
3.8
8
95
4
51
75
0
0
24
0.80
110892039--110892130
44
2.1
44
85
4
123
21
19
22
35
1.96
110893423--110893508
28
3.0
28
84
3
109
27
27
15
29
1.96
110894915--110894946
16
2.0
16
93
0
55
15
6
28
50
1.68
110894974--110895085
18
6.2
18
76
0
107
33
14
16
35
1.89
110894974--110895085
36
3.1
35
79
5
125
33
14
16
35
1.89
110901749--110901799
19
2.8
18
85
5
75
23
9
7
58
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110910712--110910769
26
2.2
26
93
0
98
34
5
24
36
1.78
110916825--110916852
13
2.2
13
100
0
56
21
0
0
78
0.75
110916824--110916856
16
2.1
16
94
0
57
24
0
0
75
0.80
110918809--110918871
29
2.2
28
83
16
76
63
1
4
30
1.24
110920427--110920457
14
2.2
14
94
0
53
35
0
3
61
1.12
110920548--110920584
15
2.6
14
91
8
58
78
0
0
21
0.75
110928991--110929016
2
13.0
2
100
0
52
50
0
0
50
1.00
110938154--110938215
30
2.1
30
100
0
124
33
6
12
46
1.68
110938487--110938534
20
2.5
20
86
10
64
25
10
2
62
1.38
110946538--110946579
21
2.0
21
81
13
50
45
4
4
45
1.45
110953336--110953375
21
1.9
21
100
0
80
40
15
10
35
1.80
110953476--110953535
23
2.5
24
78
10
61
55
3
0
41
1.16
110956705--110956745
20
2.0
20
85
0
55
31
7
14
46
1.72
110959462--110959533
18
4.1
18
72
10
60
23
25
18
33
1.97
110962334--110962373
6
6.8
6
88
5
64
17
20
15
47
1.83
110962334--110962373
17
2.3
18
91
4
64
17
20
15
47
1.83
110971619--110971794
46
3.8
46
79
12
216
20
21
29
28
1.98
110971616--110971787
93
1.8
93
96
0
317
20
21
29
27
1.98
110979173--110979348
46
3.8
46
79
12
216
20
21
29
28
1.98
110979170--110979341
93
1.8
93
96
0
317
20
21
29
27
1.98
110989113--110989190
25
3.2
25
65
26
67
8
65
1
24
1.29
110997855--110997906
12
4.3
12
80
7
61
11
5
1
80
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111000211--111000267
15
3.9
15
88
2
80
33
1
12
52
1.49
111000207--111000265
30
2.0
28
90
6
91
30
1
11
55
1.46
111000639--111000725
21
4.0
23
79
10
92
16
20
24
39
1.92
111000887--111000927
19
2.2
19
87
12
59
46
0
24
29
1.53
111009564--111009625
31
2.1
30
82
17
76
45
8
17
29
1.77
111011953--111012000
25
1.9
25
86
0
69
33
25
16
25
1.96
111012044--111012102
20
3.0
20
97
0
109
35
11
20
32
1.89
111012048--111012102
11
5.4
11
70
16
55
36
12
20
30
1.90
111012153--111012321
24
7.1
24
91
0
261
28
20
21
29
1.98
111014056--111014129
33
2.2
33
85
0
94
27
9
20
43
1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362