genome.fa.s8.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  108  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35478283--35478356	22	3.2	22	67	23	62	17	4	14	63	1.45
35478280--35478375	47	2.0	47	95	0	174	16	4	17	61	1.50
35478296--35478378	25	3.4	25	68	15	75	16	4	18	60	1.53
35494175--35494210	18	2.0	18	88	0	54	30	16	11	41	1.83
35504824--35504859	14	2.5	14	90	4	54	55	0	5	38	1.23
35507511--35507691	23	7.9	23	70	10	113	23	22	20	33	1.97
35507521--35507692	46	3.7	46	85	1	238	23	22	20	33	1.97
35512482--35512506	13	1.9	13	100	0	50	12	40	32	16	1.84
35515500--35515655	9	17.6	9	70	13	83	44	17	1	37	1.57
35515485--35515594	36	3.1	36	95	0	202	46	16	1	35	1.58
35515536--35515641	43	2.5	43	86	6	135	43	16	1	37	1.60
35517473--35517498	12	2.2	12	100	0	52	34	7	26	30	1.85
35520928--35520981	28	2.0	28	85	3	74	37	11	16	35	1.84
35527446--35527505	31	1.9	31	86	6	86	43	1	16	38	1.58
35532957--35533011	29	2.0	25	83	13	65	40	25	18	16	1.91
35550868--35550912	22	2.0	22	83	8	56	48	0	4	46	1.22
35553141--35553188	7	7.0	7	90	4	80	16	14	27	41	1.87
35553302--35553351	18	2.6	19	84	12	66	60	6	0	34	1.21
35553360--35553437	28	2.7	29	78	9	79	57	2	7	32	1.40
35553690--35554098	185	2.2	185	86	1	588	26	26	7	40	1.81
35564545--35564588	22	2.0	22	86	0	61	43	15	0	40	1.47
35565082--35565142	21	2.9	21	87	2	95	44	3	1	50	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35566301--35566519	41	5.3	41	76	0	204	21	28	17	32	1.96
35566301--35566506	82	2.5	82	79	0	241	21	28	16	33	1.95
35568511--35568567	23	2.5	23	85	0	69	38	14	24	22	1.91
35568563--35568630	26	2.7	26	80	8	68	36	22	23	17	1.94
35576142--35576202	25	2.4	25	78	5	70	29	13	31	26	1.93
35576328--35576387	26	2.3	26	80	5	77	41	21	18	18	1.90
35577632--35577681	5	10.4	5	91	8	86	40	0	0	60	0.97
35577637--35577675	18	2.2	18	100	0	78	38	0	0	61	0.96
35577630--35577680	23	2.2	23	100	0	102	39	0	0	60	0.97
35581532--35581696	69	2.4	69	84	8	194	35	18	5	41	1.73
35581677--35581721	22	2.1	22	88	12	67	37	13	4	44	1.64
35581767--35581870	51	2.0	51	94	0	181	35	11	9	43	1.74
35583738--35583789	19	3.2	16	84	13	54	48	0	1	50	1.12
35583759--35583822	19	3.4	18	77	12	58	43	1	3	51	1.26
35585304--35585331	4	7.0	4	100	0	56	25	0	0	75	0.81
35588467--35588499	16	1.9	18	88	11	52	48	12	15	24	1.78
35588976--35589129	41	3.6	42	83	8	152	22	28	21	27	1.99
35589016--35589144	45	2.9	45	88	6	185	24	29	21	24	1.99
35591222--35591325	46	2.3	46	91	0	163	28	22	17	31	1.96
35591222--35591343	46	2.7	48	82	12	150	29	22	16	31	1.96
35591692--35591716	12	2.1	12	100	0	50	48	8	0	44	1.32
35595165--35595218	27	2.0	27	85	0	72	40	7	12	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35601113--35601237	27	4.6	27	83	7	114	41	20	8	29	1.81
35601137--35601262	27	4.7	27	86	0	162	40	18	10	30	1.84
35601113--35601262	54	2.8	54	84	2	176	41	19	9	30	1.83
35601284--35601504	27	8.2	27	85	2	291	34	18	20	26	1.96
35601727--35601821	25	3.8	25	90	0	145	26	23	23	27	2.00
35602778--35602831	27	2.0	27	85	0	72	38	7	14	38	1.75
35603116--35603160	22	2.0	22	82	0	54	33	17	22	26	1.96
35606936--35606966	14	2.2	14	94	0	53	48	0	3	48	1.17
35608431--35608605	40	4.4	39	90	5	262	24	27	22	25	2.00
35616436--35616573	40	3.5	40	91	3	208	22	28	24	23	1.99
35627294--35627529	39	6.1	39	94	1	420	23	30	25	20	1.99
35636541--35636569	15	2.0	15	93	6	51	55	20	13	10	1.68
35645379--35645489	56	1.9	56	83	3	141	35	17	16	31	1.92
35645391--35645514	56	2.2	56	77	0	140	35	18	13	32	1.90
35648588--35648613	13	2.0	13	100	0	52	15	38	30	15	1.88
35654023--35654049	14	1.9	14	100	0	54	59	11	7	22	1.56
35672454--35672493	21	2.0	21	90	5	64	27	30	32	10	1.89
35673543--35673704	46	3.5	44	79	9	148	25	29	18	27	1.98
35680642--35680858	46	4.7	46	75	12	158	23	26	20	29	1.99
35688153--35688191	20	1.9	21	85	15	55	53	2	0	43	1.14
35689574--35689635	30	2.0	31	96	3	117	29	22	11	37	1.89
35705467--35705506	21	2.0	20	90	5	62	85	0	15	0	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35706764--35706941	40	4.5	40	88	3	227	23	24	28	24	1.99
35741235--35741370	47	2.9	47	91	0	209	33	11	28	25	1.91
35741344--35741480	46	3.0	46	85	0	184	35	8	29	25	1.86
35752016--35752092	40	1.9	40	89	5	120	25	20	16	36	1.94
35754956--35755032	40	1.9	40	92	5	129	24	20	18	36	1.95
35783775--35783831	23	2.5	24	81	13	66	70	3	1	24	1.13
35792766--35792797	3	10.7	3	100	0	64	31	0	0	68	0.90
35794657--35794699	13	3.3	13	83	9	52	39	0	6	53	1.28
35795091--35795139	20	2.5	19	77	9	53	53	4	2	40	1.32
35797228--35797356	40	3.2	40	74	9	129	33	20	20	25	1.97
35797393--35797533	40	3.6	39	86	12	184	27	19	22	30	1.98
35797957--35798091	14	9.5	14	68	9	67	21	2	32	43	1.65
35797952--35798068	7	16.4	7	70	10	67	23	2	28	46	1.65
35799480--35799680	89	2.3	89	93	0	339	19	20	16	42	1.89
35800360--35800413	27	2.0	27	96	0	99	37	18	9	35	1.83
35802278--35802520	43	5.7	43	87	1	310	25	18	27	29	1.98
35802278--35802520	128	1.9	129	88	2	373	25	18	27	29	1.98
35803988--35804097	58	2.0	53	84	10	141	45	22	10	20	1.82
35805408--35805570	46	3.5	47	77	9	140	26	30	16	26	1.97
35805776--35805906	65	2.0	65	98	0	253	31	19	15	34	1.92
35807052--35807091	3	13.0	3	94	5	71	2	32	0	65	1.06
35807774--35807827	20	2.7	20	82	2	63	27	22	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35808215--35808284	21	3.2	21	66	25	54	21	12	25	40	1.89
35811167--35811206	18	2.2	18	86	8	55	67	12	0	20	1.22
35811290--35811348	30	2.0	30	96	0	109	57	8	3	30	1.45
35811389--35811438	22	2.3	22	79	6	57	58	6	18	18	1.59
35811755--35811829	39	1.9	39	83	5	98	53	0	10	36	1.36
35825291--35825322	15	2.1	15	94	0	55	65	6	9	18	1.42
35835156--35835379	104	2.2	104	92	1	369	17	18	31	31	1.95
35835298--35835449	71	2.1	72	91	1	243	23	16	29	30	1.96
35838211--35838250	20	2.0	20	90	0	62	32	17	15	35	1.91
35839509--35839565	17	3.4	17	75	4	53	45	3	0	50	1.18
35843950--35844037	27	3.2	26	79	6	86	35	22	7	34	1.84
35843959--35844042	27	3.0	27	77	6	89	30	20	10	38	1.87
35843972--35844048	27	2.8	27	82	2	100	31	22	9	37	1.85
35846483--35846517	15	2.3	15	100	0	70	54	20	14	11	1.70
35848923--35848967	22	2.0	22	100	0	90	31	15	8	44	1.77
35853049--35853125	37	2.1	37	95	4	138	27	14	15	42	1.85
35857976--35858082	43	2.5	43	81	1	135	29	16	21	31	1.96
35859264--35859301	20	1.9	20	94	0	67	21	39	28	10	1.86
35860836--35860920	21	4.0	21	76	3	71	37	24	20	17	1.93
35860848--35860922	21	3.5	22	76	8	82	34	24	24	17	1.96
35862968--35863030	31	2.0	31	93	0	108	22	19	20	38	1.94
35863706--35863739	16	2.1	17	88	5	52	32	29	0	38	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35864942--35864980	20	2.0	19	90	5	60	0	28	0	71	0.86
35865339--35865394	7	8.1	7	77	16	55	57	0	0	42	0.99
35865334--35865401	20	3.3	21	76	12	70	58	0	0	41	0.98
35878718--35878750	16	2.1	16	94	0	57	15	6	27	51	1.66
35880809--35880936	60	2.1	60	83	0	157	39	24	14	21	1.91
35880864--35880941	29	2.6	30	81	6	104	39	28	11	20	1.87
35895853--35895950	51	1.9	52	93	2	171	27	8	17	46	1.76
35905764--35905935	87	2.0	87	100	0	344	43	6	18	31	1.77
35911886--35911925	18	2.2	19	86	4	55	25	27	0	47	1.52
35914086--35915242	385	3.0	385	97	0	2197	28	29	22	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362