genome.fa.s8.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  167  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54883806--54883879	29	2.6	29	84	4	96	25	14	32	27	1.95
54884190--54884372	40	4.6	40	89	2	251	25	22	26	25	2.00
54886947--54887106	42	3.8	42	80	7	164	29	23	15	31	1.95
54893498--54893617	42	2.8	42	80	1	132	30	23	17	29	1.97
54899160--54899206	24	2.0	24	100	0	94	34	4	21	40	1.73
54902798--54902831	11	3.0	11	95	4	59	55	0	26	17	1.42
54906535--54906705	45	3.7	46	76	13	190	21	21	27	29	1.98
54906532--54906700	92	1.8	92	92	2	286	21	21	28	28	1.98
54987896--54987956	30	2.0	31	83	3	79	40	6	19	32	1.77
54988375--54988643	46	5.8	45	77	14	271	21	20	28	30	1.98
54988372--54988636	93	2.8	93	95	0	476	21	20	28	29	1.98
54991222--54991253	16	2.0	16	93	0	55	34	18	0	46	1.49
54991612--54991663	22	2.4	22	86	0	68	15	9	19	55	1.67
54992765--54992874	42	2.6	43	80	7	118	30	20	21	28	1.98
54995137--54995315	39	4.6	39	80	4	123	28	26	21	22	1.99
54995169--54995332	78	2.1	78	81	3	188	26	28	21	23	1.99
54995207--54995332	39	3.2	39	91	0	198	26	28	21	23	1.99
55011628--55011866	47	5.1	47	95	0	397	31	12	30	25	1.92
55011628--55011913	94	3.0	93	87	3	315	32	11	29	26	1.91
55011840--55011977	46	3.0	46	80	1	150	34	8	28	28	1.87
55013464--55013791	40	8.2	40	91	0	494	24	21	28	25	1.99
55017898--55018042	47	3.1	47	94	0	245	31	11	31	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55018016--55018152	46	3.0	46	84	0	175	34	8	29	27	1.86
55021054--55021147	39	2.4	39	80	5	102	26	27	23	22	1.99
55021121--55021246	39	3.2	39	90	0	189	28	29	19	22	1.98
55029136--55029368	50	4.7	50	73	12	208	32	26	15	25	1.95
55029136--55029418	100	2.8	101	75	6	234	32	26	16	24	1.96
55029112--55029475	150	2.4	150	87	2	525	31	26	17	25	1.97
55029285--55029469	101	1.8	101	85	2	264	30	26	17	25	1.97
55030088--55030146	30	2.0	30	86	0	82	28	27	6	37	1.82
55032439--55032476	15	2.5	15	87	8	51	47	18	18	15	1.83
55034395--55034501	40	2.7	40	84	5	119	25	27	21	26	1.99
55034438--55034620	40	4.6	40	80	7	178	27	27	20	24	1.99
55034441--55034620	79	2.3	80	81	11	201	27	27	21	23	1.99
55042273--55042379	40	2.7	40	84	5	119	25	27	21	26	1.99
55042279--55042498	79	2.8	78	79	6	228	26	27	20	25	1.99
55042316--55042498	40	4.6	40	80	8	187	27	27	20	24	1.99
55046976--55047321	50	6.9	50	76	7	315	30	26	17	26	1.97
55046990--55047319	101	3.3	101	84	4	400	31	25	17	25	1.97
55047669--55047715	19	2.3	20	82	10	60	51	12	0	36	1.40
55047936--55047994	30	2.0	30	86	0	82	25	28	6	38	1.81
55050306--55050342	15	2.5	15	91	8	58	54	13	18	13	1.71
55053818--55054005	51	3.7	50	71	10	143	32	21	20	25	1.98
55053860--55054047	101	1.9	101	89	0	295	32	23	18	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55054408--55054454	19	2.3	20	82	10	60	48	14	0	36	1.44
55063835--55063946	43	2.6	43	73	6	111	25	16	26	32	1.96
55063916--55064015	51	2.0	51	85	0	137	24	16	26	34	1.95
55065397--55065497	42	2.4	43	84	3	132	29	17	22	29	1.97
55066805--55066851	23	2.0	23	100	0	94	25	4	12	57	1.54
55068537--55068642	43	2.5	43	84	3	133	27	14	23	34	1.93
55071839--55072003	40	4.1	40	85	1	206	24	21	27	26	1.99
55079826--55079934	43	2.6	42	82	5	139	29	17	24	28	1.97
55083945--55084027	43	1.9	43	92	0	139	30	32	16	20	1.95
55091583--55091776	47	4.1	47	91	0	298	32	11	29	26	1.91
55091612--55091683	22	3.1	22	64	24	58	33	13	29	23	1.93
55091657--55091732	23	3.2	25	62	24	63	28	13	34	23	1.92
55091747--55091930	98	1.9	96	89	2	287	36	5	27	30	1.79
55091746--55091930	48	3.8	48	87	2	280	36	5	27	31	1.79
55092076--55092220	37	3.9	37	95	0	254	22	19	31	26	1.98
55093491--55093762	40	6.8	40	93	0	436	23	21	29	25	1.99
55097733--55097909	27	6.6	27	83	5	196	29	28	15	27	1.96
55097754--55097908	81	1.9	81	88	5	233	29	28	15	27	1.96
55105698--55105875	27	6.6	27	84	3	205	29	28	15	26	1.96
55105719--55105874	82	1.9	81	88	3	233	29	28	15	26	1.96
55108780--55108973	47	4.1	47	86	0	262	32	11	28	27	1.91
55108943--55109081	52	2.8	52	84	8	198	36	5	25	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55108943--55109078	48	2.8	48	85	8	184	36	5	25	32	1.80
55109230--55109341	37	3.0	36	90	2	170	22	16	33	27	1.96
55111059--55111083	8	3.1	8	100	0	50	28	12	12	48	1.76
55123292--55123350	29	2.0	30	83	3	75	38	6	23	30	1.81
55126734--55126766	17	1.9	17	93	0	57	33	0	12	54	1.37
55138275--55138315	17	2.4	17	87	4	55	17	51	14	17	1.77
55138450--55138489	8	4.8	8	87	9	53	30	0	0	70	0.88
55140540--55140565	12	2.2	12	100	0	52	38	0	0	61	0.96
55140532--55140581	22	2.2	23	82	3	57	40	0	6	54	1.25
55144317--55144446	39	3.2	40	79	3	102	24	21	26	27	1.99
55144360--55144446	39	2.2	39	89	4	131	22	22	26	27	2.00
55144360--55144459	39	2.6	39	85	6	114	23	22	27	28	1.99
55147302--55147486	40	4.7	40	79	10	184	25	22	27	25	2.00
55161774--55161925	27	5.6	27	93	3	241	30	28	13	26	1.94
55161774--55161925	55	2.8	55	94	0	259	30	28	13	26	1.94
55163375--55163526	27	5.6	27	93	3	241	30	28	13	26	1.94
55163375--55163526	55	2.8	55	94	0	259	30	28	13	26	1.94
55171422--55171573	27	5.6	27	93	3	241	30	28	13	26	1.94
55171422--55171573	55	2.8	55	94	0	259	30	28	13	26	1.94
55181637--55181676	20	1.9	22	90	10	66	50	2	10	37	1.50
55187917--55188088	43	4.0	43	72	10	138	27	15	25	31	1.95
55206268--55206422	43	3.6	43	80	5	161	27	15	26	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55208025--55208059	17	2.1	17	89	5	54	40	11	14	34	1.82
55214126--55214207	43	1.9	43	84	0	110	23	15	30	30	1.96
55222436--55222646	43	4.9	43	87	4	309	23	20	29	27	1.99
55223210--55223242	16	1.9	18	88	11	52	18	12	18	51	1.76
55229611--55229855	43	5.7	43	88	1	359	26	18	29	26	1.98
55230113--55230170	28	2.1	28	100	0	116	34	13	22	29	1.93
55234915--55234957	22	2.0	22	85	0	59	6	23	2	67	1.27
55237457--55237673	44	4.8	45	80	14	250	20	19	29	29	1.97
55240589--55240638	15	3.4	15	86	2	66	10	18	12	60	1.59
55243011--55243173	46	3.8	46	75	18	170	19	21	29	30	1.97
55243051--55243119	34	2.0	34	97	0	129	15	21	33	28	1.95
55243011--55243165	80	1.9	80	89	0	238	18	21	29	29	1.97
55244507--55244615	27	4.0	27	77	8	105	17	22	22	38	1.93
55244504--55244613	54	2.0	54	84	3	141	18	22	20	39	1.93
55250893--55250935	22	2.0	22	85	0	59	6	23	2	67	1.27
55252155--55252255	27	3.7	27	83	8	125	15	24	21	37	1.93
55253985--55254039	28	2.0	28	81	0	65	36	25	9	29	1.87
55254024--55254161	40	3.3	40	81	9	152	31	25	18	24	1.97
55256542--55256626	43	2.0	43	97	0	161	43	25	9	21	1.82
55271723--55271759	18	2.1	18	94	0	65	43	16	5	35	1.71
55278360--55278491	39	3.4	38	86	2	165	29	18	26	25	1.98
55287901--55288045	40	3.6	40	89	1	193	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55287901--55288072	80	2.2	80	82	3	204	23	20	27	27	1.99
55295953--55296097	40	3.7	40	87	5	172	24	22	27	25	2.00
55295988--55296097	39	2.8	39	91	2	166	25	22	28	23	2.00
55300931--55301115	40	4.6	41	82	7	193	27	27	21	24	1.99
55300934--55301115	81	2.3	80	82	8	201	26	27	21	24	1.99
55302979--55303092	43	2.7	42	93	2	192	27	25	16	30	1.97
55303209--55303357	30	4.8	31	79	9	160	26	26	19	28	1.99
55303333--55303461	50	2.6	47	78	12	125	25	21	16	36	1.94
55311439--55311622	40	4.6	40	84	8	198	24	21	27	27	1.99
55311520--55311669	40	3.8	38	80	10	131	25	22	28	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362