Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  149  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49536571--49536616
24
1.9
24
100
0
92
26
21
26
26
2.00
49538090--49538121
12
2.7
12
100
0
64
81
6
6
6
0.99
49538091--49538131
12
3.7
11
90
6
57
80
4
4
9
1.00
49546186--49546273
30
2.9
30
73
6
79
29
25
17
28
1.97
49548768--49548832
15
4.2
14
75
19
58
75
6
15
3
1.12
49548913--49548955
18
2.4
18
100
0
86
65
0
20
13
1.27
49548930--49549000
30
2.4
31
81
11
85
61
1
23
12
1.39
49551092--49551188
30
3.2
30
76
2
106
27
27
15
28
1.96
49552990--49553165
46
3.8
46
75
12
189
21
20
28
29
1.98
49552987--49553158
93
1.8
93
93
0
299
22
20
28
28
1.99
49566521--49566617
30
3.2
30
76
2
106
27
16
27
27
1.97
49569313--49569409
30
3.2
31
73
5
101
27
28
15
27
1.96
49571041--49571074
13
2.6
13
95
0
59
73
8
8
8
1.25
49571990--49572037
11
4.5
10
76
23
53
79
0
16
4
0.89
49571990--49572037
5
9.0
5
82
17
53
79
0
16
4
0.89
49571990--49572035
22
2.1
22
88
8
67
80
0
15
4
0.86
49572111--49572181
30
2.4
31
81
11
85
60
1
23
14
1.42
49574249--49574345
30
3.2
31
73
5
101
27
28
15
27
1.96
49577219--49577315
30
3.2
30
73
2
97
28
16
26
27
1.97
49579689--49579745
5
11.0
5
75
20
55
1
17
3
77
1.00
49579689--49579745
16
3.7
14
82
15
60
1
17
3
77
1.00
49579689--49579756
21
3.2
21
76
15
61
1
17
4
76
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49582209--49582305
30
3.2
30
70
13
92
28
15
27
27
1.96
49584785--49584838
22
2.5
21
75
21
58
9
20
1
68
1.27
49589886--49589920
11
3.4
11
88
11
56
22
0
0
77
0.78
49590332--49590428
30
3.2
30
70
13
92
28
15
27
27
1.96
49592893--49592934
20
2.1
20
95
0
75
73
4
4
16
1.17
49593786--49593834
5
10.0
5
79
16
50
79
0
16
4
0.88
49593786--49593832
23
2.0
23
88
8
69
80
0
14
4
0.85
49593882--49593912
12
2.6
12
100
0
62
45
12
16
25
1.83
49596086--49596181
30
3.2
29
73
7
95
27
27
16
29
1.97
49604022--49604048
10
2.7
10
100
0
54
18
11
29
40
1.85
49608605--49608667
21
3.0
21
88
2
90
30
3
33
33
1.74
49610812--49610878
30
2.2
30
86
5
91
26
11
29
31
1.92
49617852--49617922
30
2.4
31
81
11
85
11
23
2
61
1.42
49618020--49618058
15
2.6
14
84
15
51
0
17
2
79
0.84
49618000--49618069
20
3.3
20
73
18
63
4
17
2
75
1.08
49621921--49622002
29
2.7
30
81
7
87
13
20
1
64
1.34
49622087--49622135
20
2.4
21
83
13
66
0
16
4
79
0.88
49625555--49625593
12
3.3
12
82
3
53
20
5
5
69
1.28
49625550--49625594
11
3.7
12
82
11
56
17
6
4
71
1.25
49627519--49627615
30
3.2
30
76
2
106
27
27
16
27
1.97
49630292--49630373
30
2.7
31
79
5
96
64
1
20
13
1.34
49641942--49642227
27
10.6
27
84
5
326
28
27
14
29
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49641968--49642227
109
2.4
109
95
0
468
27
27
15
29
1.96
49643733--49643779
24
2.0
24
84
12
62
12
17
0
70
1.17
49648550--49648632
30
2.8
30
73
0
85
27
25
16
30
1.97
49650867--49650963
30
3.2
30
69
5
79
26
27
15
29
1.96
49652049--49652114
20
3.2
20
74
6
62
19
25
18
36
1.94
49655343--49655382
19
2.0
19
85
9
53
17
5
7
70
1.30
49658476--49658572
30
3.2
30
73
2
88
28
13
27
29
1.94
49662278--49662335
10
5.7
10
76
11
64
29
27
13
29
1.94
49662278--49662338
20
3.0
20
83
9
79
27
26
13
32
1.93
49663687--49663775
12
6.6
14
76
19
66
71
5
8
13
1.28
49664091--49664115
4
6.2
4
100
0
50
24
0
0
76
0.80
49667889--49667913
4
6.2
4
100
0
50
24
0
0
76
0.80
49669632--49669737
6
17.7
6
70
10
74
73
3
16
6
1.19
49669618--49669756
25
5.3
26
71
14
83
71
3
17
7
1.25
49671370--49671410
15
2.7
16
74
11
50
7
26
0
65
1.18
49671568--49671606
15
2.4
15
87
12
51
10
20
2
66
1.33
49677975--49678021
20
2.3
20
85
0
67
21
12
36
29
1.91
49679920--49679959
21
2.0
20
85
5
53
27
5
17
50
1.67
49680017--49680082
33
2.0
33
97
2
125
37
9
15
37
1.79
49680892--49681199
153
2.0
153
95
4
561
41
16
20
21
1.90
49681533--49681589
11
5.5
10
73
22
55
77
1
17
3
1.00
49681522--49681589
21
3.2
20
80
12
66
76
2
17
2
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49681533--49681589
5
11.0
5
77
17
55
77
1
17
3
1.00
49681533--49681589
16
3.7
14
80
17
60
77
1
17
3
1.00
49681663--49681706
6
7.3
6
84
0
52
75
2
18
4
1.09
49683973--49684019
15
3.3
15
73
11
53
29
0
25
44
1.54
49683967--49684025
28
2.1
29
90
3
93
28
0
28
42
1.56
49685448--49685535
30
2.9
30
75
0
104
27
28
17
27
1.97
49687072--49687107
10
3.6
10
84
0
54
19
22
19
38
1.93
49687062--49687109
20
2.4
20
78
0
60
22
27
16
33
1.96
49689798--49689894
30
3.2
30
77
2
106
28
15
26
28
1.96
49690567--49690686
43
2.8
42
76
10
127
25
20
27
26
1.99
49692420--49692563
49
2.9
49
83
4
191
26
25
20
27
1.99
49694553--49694753
65
3.1
65
95
1
368
29
22
25
22
1.99
49696299--49696395
30
3.2
29
72
8
88
28
26
14
29
1.95
49698354--49698406
21
2.6
20
80
16
56
67
3
20
7
1.31
49698377--49698440
6
10.5
6
76
3
65
71
1
21
4
1.12
49698360--49698490
18
7.4
18
68
14
85
66
2
23
7
1.29
49713245--49713291
16
2.9
16
83
3
58
31
10
25
31
1.90
49714511--49714559
21
2.4
20
83
16
57
77
4
18
0
0.92
49714522--49714577
16
3.7
15
84
13
78
76
1
17
3
1.01
49714645--49714669
12
2.1
12
100
0
50
76
0
16
8
1.02
49714639--49714694
18
3.1
18
76
5
51
69
3
19
7
1.27
49714645--49714726
30
2.7
31
81
5
105
64
1
21
12
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49716967--49717011
14
3.2
14
83
0
54
22
33
6
37
1.80
49717282--49717339
29
2.0
29
82
3
71
13
25
0
60
1.34
49717418--49717473
5
11.0
5
75
24
55
3
17
1
76
1.01
49719193--49719235
21
2.1
20
82
4
50
41
20
16
20
1.90
49726853--49726892
19
2.0
20
95
4
73
0
22
5
72
1.04
49727896--49728350
231
2.0
228
81
6
544
30
10
30
27
1.91
49728636--49728683
14
3.4
14
82
0
51
41
6
33
18
1.76
49731158--49731200
21
2.1
20
86
4
59
41
20
18
18
1.90
49732657--49732683
10
2.7
10
100
0
54
18
11
29
40
1.85
49733700--49733766
24
2.6
26
86
13
102
11
7
2
77
1.08
49737287--49737329
21
2.1
20
86
4
59
41
20
18
18
1.90
49739317--49739341
13
1.9
13
100
0
50
64
8
0
28
1.22
49739566--49739614
21
2.4
20
86
3
62
42
22
20
14
1.88
49741174--49741219
20
2.3
20
88
0
65
36
17
23
21
1.94
49744221--49744317
30
3.2
30
70
8
81
27
14
28
28
1.95
49745627--49745685
20
3.0
20
87
0
82
20
10
35
33
1.86
49747153--49747200
20
2.4
20
75
0
60
20
29
18
31
1.97
49749172--49749260
42
2.1
42
91
0
142
56
4
23
15
1.58
49749272--49749321
18
2.8
18
84
0
64
60
0
26
14
1.34
49749339--49749377
18
2.1
19
85
4
53
66
2
23
7
1.30
49750964--49751011
20
2.4
20
75
0
60
20
29
18
31
1.97
49753331--49753791
154
3.0
154
98
0
879
44
16
15
23
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49756618--49756685
11
5.5
12
75
17
59
14
7
4
73
1.21
49758464--49758925
154
3.0
154
99
0
906
44
17
15
22
1.86
49761738--49761822
13
6.6
12
77
16
73
15
8
4
71
1.26
49761707--49761772
31
2.2
29
84
7
80
6
16
3
74
1.15
49761752--49761813
28
2.3
28
81
10
76
16
8
3
72
1.21
49766827--49766885
20
2.9
21
79
2
66
38
16
22
22
1.93
49769233--49769329
30
3.2
30
71
8
90
27
15
28
27
1.96
49771808--49771851
18
2.4
18
96
3
79
15
4
4
75
1.14
49775008--49775046
21
1.9
20
84
5
51
41
17
20
20
1.91
49777928--49777980
20
2.7
19
81
16
56
0
15
5
79
0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362