Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  150  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49778916--49778941
10
2.6
10
100
0
52
23
0
7
69
1.14
49778900--49778931
14
2.3
14
100
0
64
18
0
6
75
1.01
49779092--49779132
16
2.5
16
96
4
73
9
17
0
73
1.09
49785018--49785281
45
5.9
45
92
0
402
25
19
15
39
1.91
49792887--49793020
12
11.0
12
69
17
64
8
18
2
69
1.28
49792866--49793019
28
5.6
27
66
18
70
8
18
3
69
1.28
49792887--49792923
14
2.7
14
84
15
51
8
16
0
75
1.02
49792938--49792986
17
2.8
17
96
3
89
10
16
4
69
1.32
49792974--49792998
11
2.3
11
100
0
50
0
16
0
84
0.63
49792887--49792997
17
6.2
17
75
15
82
8
18
2
70
1.25
49792885--49792998
6
19.0
6
69
8
63
7
19
2
70
1.24
49794069--49794125
1
57.0
1
85
0
60
5
1
3
89
0.64
49794055--49794121
34
1.9
34
84
3
89
5
5
4
83
0.90
49798825--49798854
11
2.7
11
94
0
51
80
3
6
10
1.01
49798836--49798869
14
2.5
14
95
4
61
79
0
5
14
0.91
49807951--49808013
33
1.9
33
84
12
85
12
26
6
53
1.62
49808016--49808066
14
3.6
14
78
21
54
3
17
3
74
1.12
49808028--49808113
18
4.6
18
72
12
75
5
18
3
72
1.20
49808028--49808117
6
14.7
6
71
6
65
5
18
3
72
1.19
49808028--49808149
63
1.9
63
80
3
138
7
21
2
68
1.25
49809195--49809229
11
3.2
11
83
0
52
17
8
2
71
1.23
49809216--49809258
17
2.6
17
96
3
79
30
9
0
60
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49811364--49811421
10
5.7
10
76
11
64
29
27
13
29
1.94
49811364--49811424
20
3.0
20
83
9
79
27
26
13
32
1.93
49812785--49812817
10
3.3
10
91
8
50
72
9
3
15
1.21
49812800--49812873
38
2.0
36
87
10
105
71
5
14
8
1.28
49813874--49813939
6
10.7
6
70
6
51
74
3
16
6
1.15
49813875--49813940
18
3.6
17
78
12
60
74
3
15
7
1.17
49813887--49813939
6
9.2
6
77
6
56
77
3
15
3
1.06
49813978--49814012
18
1.9
18
88
11
54
57
0
20
22
1.41
49816071--49816128
10
5.7
10
76
11
64
29
27
13
29
1.94
49816071--49816131
20
3.0
20
83
9
79
27
26
13
32
1.93
49825710--49825787
21
3.4
23
74
8
70
26
2
30
39
1.70
49825746--49825812
21
3.1
21
82
4
80
29
2
32
34
1.73
49830051--49830106
17
3.2
17
74
18
51
8
12
3
75
1.17
49830066--49830119
20
2.8
18
81
15
56
5
12
3
77
1.07
49832334--49832368
12
2.6
14
91
8
56
14
8
0
77
0.99
49832666--49832732
21
3.1
21
82
4
80
29
2
32
34
1.73
49835373--49835400
4
7.0
4
100
0
56
25
0
0
75
0.81
49837308--49837354
12
3.9
12
94
0
76
14
4
2
78
0.99
49841297--49841334
17
2.2
18
85
4
51
63
2
23
10
1.39
49841316--49841370
12
4.6
12
73
15
51
63
0
23
12
1.29
49843928--49843984
29
2.0
29
96
0
105
26
0
28
45
1.54
49844964--49845008
14
3.3
14
78
6
56
48
15
0
35
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49848494--49848518
9
2.8
9
100
0
50
0
8
8
84
0.79
49848738--49848794
29
2.0
29
92
0
96
24
0
29
45
1.53
49849770--49849815
14
3.4
14
78
6
58
50
15
0
34
1.44
49852683--49852735
23
2.4
22
76
20
56
9
18
1
69
1.25
49860359--49860392
18
1.9
18
88
5
52
23
20
0
55
1.43
49860380--49860484
6
17.2
6
66
9
52
7
17
3
71
1.25
49860350--49860416
29
2.4
28
82
9
84
13
19
0
67
1.23
49860431--49860484
6
9.2
6
75
4
56
3
14
5
75
1.12
49861503--49861527
10
2.5
10
100
0
50
0
12
0
88
0.53
49873693--49873789
30
3.2
30
70
8
81
27
14
28
28
1.95
49874733--49874786
11
4.6
11
90
9
81
16
3
7
72
1.22
49874731--49874786
23
2.3
23
90
6
85
17
3
7
71
1.23
49877184--49877291
30
3.6
30
76
3
94
29
25
13
31
1.94
49878132--49878188
5
11.0
5
77
17
55
77
1
19
1
0.95
49878132--49878188
16
3.7
14
82
17
69
77
1
19
1
0.95
49878256--49878280
12
2.1
12
100
0
50
76
0
16
8
1.02
49878247--49878300
18
3.0
18
80
0
63
66
1
18
12
1.33
49878256--49878354
30
3.3
30
74
2
83
63
0
24
12
1.28
49878316--49878354
18
2.1
19
85
4
53
66
0
23
10
1.22
49880418--49880474
30
1.9
30
85
0
78
29
22
15
31
1.95
49886726--49886751
8
3.2
8
100
0
52
38
0
38
23
1.55
49887762--49887797
10
3.6
10
84
0
54
36
19
25
19
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49887760--49887807
20
2.4
20
82
0
69
31
16
29
22
1.96
49889483--49889538
17
3.0
17
80
19
67
8
19
0
71
1.12
49891814--49891890
40
1.9
40
100
0
154
16
23
12
46
1.82
49892637--49892662
8
3.2
8
100
0
52
38
0
38
23
1.55
49893794--49893832
18
2.1
19
85
4
53
7
23
2
66
1.30
49893838--49893876
12
3.2
12
85
0
51
20
25
0
53
1.45
49893838--49893887
24
2.1
24
84
0
64
18
24
0
58
1.40
49893847--49893887
12
3.4
12
86
0
55
14
21
0
63
1.30
49893843--49893878
12
3.0
12
87
0
54
13
25
0
61
1.33
49893847--49893900
18
3.0
18
75
0
54
12
18
1
66
1.33
49893959--49894017
5
11.4
5
74
25
52
3
18
1
76
1.02
49893960--49894017
16
3.8
14
78
15
53
3
18
1
75
1.03
49896328--49896353
12
2.2
12
100
0
52
69
7
0
23
1.14
49897552--49897600
10
4.9
10
79
0
62
42
22
22
12
1.86
49897555--49897600
20
2.3
20
92
0
74
43
23
19
13
1.86
49901926--49901996
28
2.5
30
82
15
96
12
15
2
69
1.31
49901926--49901988
26
2.4
27
82
10
76
11
14
3
71
1.26
49902033--49902076
13
3.4
13
80
0
61
18
2
4
75
1.09
49902041--49902088
13
3.8
12
81
10
51
22
2
2
72
1.05
49905356--49905416
26
2.2
28
80
5
72
14
24
0
60
1.34
49907057--49907140
19
4.2
19
75
13
80
78
3
8
9
1.07
49907976--49908042
16
4.2
15
73
19
55
76
1
19
2
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49907979--49908040
21
2.9
21
82
2
79
77
1
17
3
0.98
49908089--49908119
12
2.6
12
100
0
62
45
12
16
25
1.83
49910230--49910326
30
3.2
30
75
2
106
27
26
16
28
1.97
49914151--49914224
30
2.5
30
73
8
78
29
16
25
28
1.97
49919852--49919898
20
2.3
20
85
0
67
21
12
36
29
1.91
49921569--49921674
48
2.2
48
85
9
137
14
24
1
59
1.45
49922700--49922735
10
3.8
9
89
10
54
2
8
2
86
0.77
49922691--49922750
22
2.7
21
82
7
66
5
15
3
76
1.08
49924280--49924326
20
2.3
20
85
0
67
21
12
36
29
1.91
49935150--49935203
24
2.2
25
78
15
60
11
22
3
62
1.43
49937453--49937485
17
1.9
17
93
0
57
15
6
6
72
1.24
49940089--49940123
16
2.2
16
90
5
54
82
0
11
5
0.82
49940090--49940128
20
1.9
21
84
5
53
82
2
10
5
0.93
49942035--49942066
11
2.9
11
100
0
64
75
6
0
18
1.01
49951898--49951945
14
3.4
14
85
0
60
18
31
6
43
1.75
49954337--49954410
37
2.0
38
86
2
105
22
32
20
24
1.98
49957062--49957162
12
9.2
11
78
17
70
68
3
4
22
1.26
49957066--49957138
9
6.9
10
79
15
60
69
4
4
21
1.22
49957058--49957126
35
2.0
35
88
8
106
68
5
4
21
1.29
49957066--49957159
11
8.6
11
74
16
63
71
3
5
20
1.20
49957102--49957158
9
5.9
9
76
13
51
71
0
7
21
1.08
49960269--49960318
21
2.4
20
83
12
57
78
4
18
0
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49960280--49960333
16
3.5
14
82
14
54
77
1
16
3
1.00
49960275--49960335
26
2.4
26
78
15
65
77
3
16
3
1.04
49960404--49960485
30
2.7
30
81
5
94
63
1
21
13
1.36
49964710--49964744
13
2.6
14
91
8
56
60
5
2
31
1.35
49964962--49965002
21
2.0
21
85
0
55
41
17
19
21
1.90
49964974--49965018
20
2.2
21
88
4
65
35
22
22
20
1.96
49964974--49965028
20
2.7
20
82
2
56
34
20
23
21
1.97
49967681--49967718
17
2.2
17
100
0
76
60
7
5
26
1.46
49967791--49967887
30
3.2
30
77
2
106
28
16
26
27
1.97
49968285--49968642
179
2.0
179
90
3
560
22
25
22
29
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362