genome.fa.s8.2.7.7.80.10.50.1000.277.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  277  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93491091--93491153	30	2.1	29	85	11	83	14	17	15	52	1.75
93501991--93502355	46	8.0	46	89	0	507	40	13	24	21	1.89
93502636--93502668	17	2.0	17	94	5	59	48	0	15	36	1.45
93515814--93515866	18	2.9	18	82	0	61	41	13	20	24	1.88
93516189--93516394	27	7.6	27	83	4	218	40	19	12	27	1.88
93516385--93516501	27	4.3	27	89	2	164	18	18	21	41	1.91
93516205--93516395	81	2.4	81	86	1	276	39	18	13	28	1.88
93520135--93520246	46	2.4	47	85	5	156	19	32	22	25	1.98
93526616--93526645	3	10.0	3	92	0	51	66	0	30	3	1.07
93528910--93528960	25	2.0	25	100	0	102	27	11	15	45	1.81
93530626--93530719	38	2.5	38	87	0	143	34	11	20	34	1.89
93536810--93537031	40	5.6	40	90	1	331	22	27	23	26	2.00
93544079--93544339	40	6.6	40	91	2	384	21	26	23	27	1.99
93559345--93559446	44	2.4	42	85	9	134	23	17	25	33	1.96
93567624--93567666	22	2.0	21	86	4	59	16	4	27	51	1.64
93567624--93567669	10	4.4	10	81	10	56	17	4	28	50	1.65
93570204--93570264	21	2.9	21	72	18	54	39	32	4	22	1.76
93571971--93572257	40	7.2	40	88	2	355	26	28	23	22	1.99
93580205--93580491	40	7.2	40	90	2	373	25	27	23	22	2.00
93583212--93583275	33	1.9	34	87	3	94	53	23	0	23	1.47
93583246--93583286	21	2.0	21	85	9	57	56	24	0	19	1.42
93586260--93586391	42	3.1	40	77	12	122	32	25	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93587630--93587667	18	2.1	18	100	0	76	26	26	13	34	1.93
93592109--93592176	18	3.8	18	84	0	73	51	13	16	19	1.76
93592138--93592181	18	2.4	18	92	0	70	47	11	18	22	1.80
93592512--93592645	27	5.0	27	88	0	196	43	19	11	25	1.85
93614932--93614972	20	2.0	20	86	9	57	41	7	14	36	1.74
93616572--93616676	23	4.5	23	78	10	97	36	18	20	24	1.95
93616572--93616653	23	3.5	24	83	9	107	34	19	21	24	1.97
93616572--93616676	45	2.2	47	83	6	124	36	18	20	24	1.95
93627086--93627259	46	3.8	46	78	17	198	28	29	20	21	1.98
93627094--93627263	92	1.8	93	92	1	288	27	30	21	21	1.98
93627091--93627279	46	4.1	45	73	17	156	28	29	20	21	1.98
93631018--93631188	93	1.8	93	94	0	306	27	29	21	21	1.98
93631010--93631185	46	3.8	46	81	10	214	28	29	21	21	1.98
93632894--93633137	39	6.0	39	81	10	281	22	25	28	23	2.00
93633000--93633095	50	1.9	50	91	0	156	20	26	29	23	1.99
93632961--93633130	89	1.9	89	93	0	295	22	26	28	22	1.99
93637748--93637783	13	2.8	13	100	0	72	16	5	16	61	1.53
93638728--93639037	39	8.0	39	91	0	489	21	24	29	24	1.99
93639439--93639485	22	2.1	22	100	0	94	38	8	21	31	1.83
93643430--93643460	15	2.1	15	93	0	53	48	3	0	48	1.17
93645405--93645474	31	2.3	31	92	0	113	32	20	17	30	1.95
93657023--93657071	21	2.3	21	82	6	64	24	18	12	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93657558--93657690	49	2.7	49	80	0	140	30	14	15	39	1.87
93670503--93670677	46	3.8	45	80	11	212	20	21	29	29	1.98
93670500--93670670	92	1.9	92	96	0	315	21	21	29	28	1.98
93676643--93676712	29	2.4	29	86	6	90	30	27	15	27	1.96
93679857--93679950	40	2.3	40	80	3	109	31	25	10	31	1.90
93681794--93681842	21	2.3	21	89	6	73	24	18	10	46	1.79
93687750--93687805	22	2.5	22	85	5	78	42	17	17	21	1.89
93688207--93688329	41	3.0	41	89	0	192	25	29	23	21	1.99
93688609--93688926	27	11.8	27	78	6	207	30	8	19	41	1.81
93688593--93688713	55	2.2	54	83	1	143	32	9	16	42	1.80
93688568--93688953	54	7.2	53	73	5	226	30	9	19	40	1.83
93688570--93688961	81	4.9	80	76	7	303	30	9	19	40	1.83
93688594--93688961	27	13.7	26	74	11	106	30	9	18	40	1.83
93688825--93688953	53	2.5	52	76	3	134	31	10	18	40	1.84
93688947--93689041	27	3.5	27	83	0	127	29	21	15	33	1.94
93688950--93689052	54	1.9	54	84	4	136	31	22	13	33	1.93
93696632--93696740	55	2.0	54	82	7	130	15	29	28	26	1.96
93700450--93700481	14	2.4	13	90	10	55	62	12	6	18	1.50
93705667--93705706	10	3.9	10	83	6	53	30	22	20	27	1.98
93705750--93705834	25	3.5	24	84	9	109	27	23	22	27	1.99
93706042--93706125	31	2.7	31	92	1	143	33	17	26	22	1.96
93713595--93713634	10	3.9	10	87	6	62	30	20	20	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93713680--93713749	25	2.8	25	89	4	97	28	22	20	28	1.98
93713679--93713762	25	3.4	23	78	16	80	30	21	20	27	1.98
93717465--93717495	15	2.1	15	93	0	53	25	12	3	58	1.50
93730854--93731058	27	7.6	27	85	3	205	29	29	15	26	1.96
93730854--93731057	54	3.8	54	84	3	257	29	29	15	25	1.96
93730908--93731057	81	1.9	81	88	0	228	27	28	16	27	1.97
93738996--93739200	27	7.6	27	85	3	205	29	29	15	26	1.96
93738996--93739199	54	3.8	54	84	3	257	29	29	15	25	1.96
93739050--93739199	81	1.9	81	88	0	228	27	28	16	27	1.97
93742332--93742467	48	2.8	48	82	3	157	22	30	19	27	1.98
93754676--93754741	33	2.0	33	84	0	87	30	24	21	24	1.99
93761637--93761674	19	2.0	19	85	10	51	15	21	42	21	1.89
93764874--93765068	78	2.5	78	84	0	257	34	15	18	31	1.92
93764884--93765318	37	11.6	37	77	8	271	30	15	19	35	1.92
93765025--93765191	75	2.3	72	80	5	176	27	14	19	37	1.92
93777286--93777342	25	2.3	25	84	6	71	22	29	17	29	1.97
93782798--93782881	42	2.0	42	97	0	159	39	7	17	35	1.78
93783859--93784035	43	4.1	43	74	9	130	27	17	24	30	1.97
93783871--93784027	43	3.7	41	75	10	138	28	19	24	28	1.98
93784499--93784697	91	2.2	91	92	0	326	23	6	27	42	1.79
93792839--93793030	40	4.8	40	92	1	226	27	27	21	23	1.99
93792810--93793029	80	2.8	80	81	4	248	28	27	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93799596--93799747	40	3.8	40	89	2	207	25	28	21	24	1.99
93815303--93815370	15	4.6	14	82	10	75	58	13	16	11	1.62
93815301--93815379	30	2.6	31	81	13	94	56	15	16	11	1.66
93821342--93821458	58	2.0	58	96	0	216	16	21	23	38	1.93
93823677--93823855	39	4.6	39	91	4	283	25	28	20	25	1.99
93823677--93823906	78	3.0	77	84	6	288	25	27	21	25	1.99
93830016--93830084	15	4.6	15	83	0	84	11	17	13	57	1.64
93830007--93830094	30	3.0	30	81	8	99	10	17	15	56	1.66
93832472--93832647	46	3.8	45	81	10	212	21	21	29	28	1.98
93832468--93832639	93	1.8	93	94	0	308	20	21	30	27	1.98
93836271--93836407	49	2.8	50	76	7	145	23	17	31	27	1.97
93843301--93843450	67	2.2	67	81	8	171	32	17	28	21	1.96
93843325--93843508	67	2.8	64	77	8	194	29	17	29	22	1.97
93864570--93864632	7	9.0	7	75	0	54	34	26	11	26	1.90
93864570--93864628	21	2.8	21	79	5	66	35	28	10	25	1.89
93868098--93868136	16	2.4	16	86	4	51	15	7	2	74	1.15
93868097--93868136	17	2.4	16	87	4	53	15	7	2	75	1.14
93871783--93871836	27	2.0	27	85	0	72	38	12	7	40	1.72
93874226--93874298	15	4.9	15	78	8	69	54	13	17	13	1.70
93878412--93878465	27	2.0	27	85	0	72	38	14	7	38	1.75
93883251--93883367	44	2.7	42	85	5	155	23	20	25	30	1.98
93890907--93891042	44	3.2	42	81	5	139	27	17	23	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93890946--93891042	42	2.3	42	80	5	115	26	16	23	32	1.96
93893167--93893432	40	6.8	39	94	2	437	26	28	22	22	1.99
93893167--93893432	117	2.2	120	92	3	443	26	28	22	22	1.99
93901229--93901482	40	6.5	39	92	3	363	25	27	22	23	1.99
93901229--93901482	78	3.2	79	90	5	374	25	27	22	23	1.99
93901229--93901482	118	2.2	119	88	5	374	25	27	22	23	1.99
93909712--93909935	39	5.7	39	82	11	237	22	20	27	29	1.99
93909716--93909946	77	3.0	76	81	11	256	22	20	28	28	1.99
93909757--93909970	117	1.8	117	82	11	278	23	20	29	26	1.99
93917814--93917991	27	6.6	27	84	3	205	29	28	15	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362