genome.fa.s8.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  144  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47933126--47933237	54	2.1	54	84	3	145	36	22	24	16	1.94
47934668--47934713	24	1.9	24	86	0	65	23	39	4	32	1.75
47934667--47934720	24	2.2	24	80	0	63	22	38	3	35	1.72
47953165--47953281	27	4.3	27	87	0	153	28	24	7	39	1.83
47953280--47953556	27	10.2	27	77	10	217	39	17	9	33	1.82
47953468--47953549	29	2.9	28	83	8	96	42	13	7	36	1.72
47954479--47954540	25	2.5	25	94	0	106	27	22	24	25	2.00
47954695--47954786	42	2.2	42	94	0	157	29	15	21	33	1.94
47954810--47954924	31	3.7	31	91	1	187	28	16	27	26	1.97
47957127--47957160	18	1.9	17	88	5	50	47	8	14	29	1.75
47958255--47958292	18	2.1	18	100	0	76	50	10	18	21	1.76
47960786--47960836	18	2.8	18	87	0	75	45	13	17	23	1.84
47974125--47974172	24	2.0	24	100	0	96	41	4	29	25	1.74
47976787--47976826	21	1.9	21	100	0	80	25	10	25	40	1.86
47979874--47979917	19	2.4	19	85	7	56	50	0	9	40	1.34
47980012--47980040	15	1.9	15	100	0	58	41	0	0	58	0.98
47995197--47995247	21	2.4	21	81	15	52	47	7	27	17	1.75
47995686--47995718	17	1.9	17	93	0	57	15	15	15	54	1.71
48000228--48000257	14	2.1	14	93	0	51	33	33	23	10	1.88
48011624--48011656	16	2.1	16	100	0	66	51	0	6	42	1.26
48014179--48014410	48	4.8	48	87	0	311	25	16	30	27	1.97
48014749--48014776	6	4.7	6	100	0	56	17	0	14	67	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48021554--48021610	27	2.1	27	93	3	98	52	1	3	42	1.28
48024407--48024532	62	2.0	62	100	0	252	29	20	12	37	1.90
48039948--48040083	49	2.7	49	83	2	182	26	19	25	27	1.99
48039943--48040083	51	2.8	51	82	2	187	25	19	26	27	1.99
48042056--48042120	34	2.0	34	84	6	89	30	26	16	26	1.97
48043907--48044014	26	4.2	26	93	0	189	36	24	7	32	1.83
48045884--48045919	12	3.1	12	92	4	56	80	0	0	19	0.71
48045888--48045922	6	5.8	6	93	0	61	82	0	0	17	0.66
48046147--48046201	15	3.7	15	76	16	60	12	12	10	63	1.52
48048349--48048532	51	3.7	49	88	5	246	26	19	25	28	1.99
48058910--48058960	20	2.7	19	82	14	54	41	0	21	37	1.54
48066839--48066904	18	3.3	18	70	22	60	56	0	22	21	1.43
48066832--48066915	42	2.0	42	100	0	168	52	0	26	21	1.47
48072004--48072067	29	2.2	29	94	0	110	25	23	12	39	1.90
48077439--48077476	19	2.1	19	85	9	53	63	7	2	26	1.35
48081069--48081299	40	5.8	40	89	1	313	23	27	24	24	2.00
48089284--48089507	40	5.6	40	90	3	319	23	27	25	24	2.00
48091926--48092058	37	3.6	37	92	0	230	25	30	19	24	1.98
48092056--48092397	48	7.1	48	95	0	585	30	26	6	35	1.81
48097227--48097285	28	2.1	28	100	0	118	28	10	27	33	1.89
48101708--48101756	22	2.2	22	85	7	64	32	12	24	30	1.92
48103136--48103241	53	2.0	53	96	0	194	32	15	16	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48104105--48104147	6	7.0	6	78	5	50	23	2	0	74	0.93
48112030--48112063	16	2.1	17	88	5	52	44	0	17	38	1.49
48113474--48113553	22	3.5	22	66	21	65	30	10	30	30	1.90
48113390--48113837	47	9.5	47	93	4	739	30	8	30	30	1.88
48113390--48113837	185	2.4	189	92	5	741	30	8	30	30	1.88
48116595--48116693	42	2.4	41	90	8	157	23	13	37	26	1.91
48117062--48117357	40	7.4	40	81	5	300	25	21	27	25	1.99
48120883--48121289	47	8.7	47	97	1	764	31	8	30	29	1.88
48120883--48121289	140	2.9	141	97	1	764	31	8	30	29	1.88
48120883--48121289	187	2.2	187	97	1	762	31	8	30	29	1.88
48121407--48121485	37	2.1	37	90	0	122	24	18	31	25	1.98
48135025--48135074	17	3.1	16	80	8	66	26	10	14	50	1.73
48137090--48137145	29	1.9	29	82	13	71	35	21	21	21	1.96
48138460--48138514	27	2.0	27	86	6	76	50	1	3	43	1.30
48140025--48140068	22	2.0	22	100	0	88	27	18	4	50	1.66
48142143--48142457	101	3.0	109	88	7	502	36	7	15	40	1.75
48142824--48142893	28	2.5	28	88	4	97	28	12	25	32	1.93
48147672--48147806	48	2.8	48	82	4	157	29	17	23	28	1.97
48147681--48147848	48	3.5	48	80	4	133	29	19	23	27	1.98
48147889--48148071	43	4.3	42	74	12	142	29	14	25	30	1.95
48147866--48148066	85	2.4	85	82	1	242	28	16	25	29	1.97
48147704--48148071	42	8.4	42	71	13	201	28	17	24	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48153345--48153572	47	4.9	47	75	10	207	28	19	29	22	1.98
48156430--48156770	93	3.6	94	92	2	553	33	8	30	27	1.87
48156430--48156770	47	7.3	47	92	2	553	33	8	30	27	1.87
48156430--48156770	140	2.4	140	92	2	551	33	8	30	27	1.87
48158621--48159050	40	10.8	40	90	1	650	22	22	30	25	1.99
48158629--48159050	159	2.7	160	90	1	654	22	22	30	25	1.99
48158621--48159050	199	2.2	199	88	2	643	22	22	30	25	1.99
48159296--48159346	25	2.0	25	81	7	59	33	13	31	21	1.92
48162988--48163376	47	8.3	47	92	0	618	32	8	31	28	1.87
48166456--48166506	26	2.0	26	88	3	77	50	7	0	41	1.31
48166579--48166667	44	2.0	46	85	12	123	38	23	5	32	1.78
48166653--48166722	16	4.4	16	83	0	86	32	32	2	31	1.73
48166653--48166722	32	2.2	32	86	0	95	32	32	2	31	1.73
48168024--48169155	564	2.0	565	97	0	2113	31	17	21	29	1.96
48172248--48172300	23	2.4	22	76	20	56	9	18	1	69	1.25
48213735--48214788	48	21.4	48	85	8	1266	35	6	26	31	1.83
48213898--48214035	69	2.0	69	95	0	249	34	7	27	29	1.85
48213802--48214131	165	2.0	165	95	0	588	34	7	27	30	1.85
48213754--48214179	213	2.0	213	95	0	762	35	7	26	30	1.84
48215590--48215698	37	2.9	37	93	0	173	28	30	18	22	1.97
48215845--48215993	48	3.1	48	97	0	271	30	27	5	36	1.79
48218567--48219034	48	9.8	48	95	0	805	34	7	28	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48219175--48219313	37	3.8	37	94	0	242	22	20	31	25	1.98
48226817--48226856	5	8.0	5	100	0	80	80	0	0	20	0.72
48231537--48231634	34	2.7	37	75	16	96	27	25	22	24	2.00
48231565--48231641	34	2.3	34	84	4	102	32	23	20	23	1.98
48234467--48234560	42	2.2	43	83	9	113	24	20	24	30	1.98
48234467--48234573	43	2.5	42	81	11	112	23	20	25	30	1.98
48239876--48239907	12	2.7	12	95	0	55	0	28	0	71	0.86
48246510--48246614	53	2.0	53	86	0	147	20	24	17	38	1.93
48249104--48249187	43	1.9	44	92	2	143	46	11	13	28	1.78
48249169--48249218	25	2.0	25	84	7	66	48	4	26	22	1.68
48255538--48255801	138	1.9	138	93	0	456	40	7	7	44	1.60
48261100--48261158	28	2.1	28	80	3	64	27	5	6	61	1.43
48276216--48276400	79	2.3	82	84	7	238	25	27	22	24	2.00
48276216--48276400	40	4.7	40	83	7	234	25	27	22	24	2.00
48281319--48281429	33	3.4	33	89	0	177	17	8	34	40	1.79
48281319--48281451	33	4.0	33	86	1	133	18	9	33	39	1.82
48283100--48283152	26	2.0	27	85	7	74	24	15	22	37	1.92
48284628--48284731	26	4.0	26	89	0	154	36	22	7	33	1.83
48285424--48285453	12	2.5	12	94	0	51	23	40	30	6	1.80
48286802--48286906	44	2.4	43	80	3	138	11	20	14	54	1.70
48288294--48288318	12	2.1	12	100	0	50	16	8	16	60	1.58
48288861--48288902	21	2.0	20	86	4	57	42	14	7	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48289038--48289410	50	7.7	50	79	8	296	29	19	28	22	1.98
48296701--48297073	50	7.8	46	79	10	215	27	20	29	22	1.98
48296844--48297071	50	4.6	51	78	10	222	28	18	28	23	1.98
48297864--48297888	13	1.9	13	100	0	50	8	32	32	28	1.86
48299083--48299466	76	5.1	74	80	6	324	34	22	19	23	1.97
48299248--48299452	40	5.3	40	70	13	151	35	21	19	23	1.96
48299192--48299465	152	1.8	152	86	0	395	36	21	18	23	1.95
48299277--48299466	36	5.1	36	69	14	123	34	20	20	24	1.96
48308993--48309045	25	2.2	23	83	12	63	30	0	26	43	1.55
48312485--48312535	16	3.1	15	76	23	50	17	3	3	74	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362