genome.fa.s8.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  142  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47314539--47314647	25	4.4	25	87	7	143	28	22	21	28	1.99
47314695--47314741	20	2.3	20	85	7	69	38	17	10	34	1.84
47322363--47322426	31	2.1	31	90	0	101	25	23	14	37	1.92
47322635--47322717	25	3.4	25	90	5	125	30	21	19	28	1.98
47322635--47322742	25	4.4	24	84	5	119	28	22	20	28	1.98
47322634--47322742	50	2.2	48	83	8	139	28	22	20	29	1.98
47322786--47322855	20	3.6	19	86	7	97	37	21	8	32	1.84
47322790--47322846	11	5.6	11	70	19	52	36	21	8	33	1.84
47324752--47324816	29	2.3	28	83	2	85	27	26	15	30	1.96
47330534--47330796	48	5.5	48	86	1	332	28	29	15	26	1.96
47331016--47331044	14	2.0	15	93	6	51	41	13	6	37	1.72
47334381--47334411	10	3.1	10	100	0	62	32	29	0	38	1.57
47335128--47335360	38	6.1	38	87	2	322	29	24	23	22	1.99
47335128--47335354	78	3.0	76	86	2	328	29	25	23	22	1.99
47335128--47335339	116	1.8	116	89	0	334	29	25	23	21	1.99
47339900--47339930	15	2.1	15	93	0	53	58	19	9	12	1.62
47351644--47351720	20	3.5	20	66	19	55	18	20	29	31	1.96
47355010--47355038	14	2.1	14	93	6	51	48	20	0	31	1.50
47361942--47362112	86	2.0	86	100	0	342	28	22	16	32	1.96
47362155--47362250	42	2.3	43	81	5	115	33	22	16	27	1.96
47370664--47370769	25	4.3	24	72	15	83	32	24	21	21	1.98
47370653--47370776	50	2.5	49	87	6	178	31	23	22	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47385011--47385076	31	2.1	32	97	2	125	21	19	24	34	1.96
47394969--47395142	49	3.7	49	73	9	146	24	27	21	27	1.99
47406813--47406853	20	2.1	19	86	4	55	39	0	2	58	1.11
47414015--47414192	27	6.6	27	81	5	180	28	28	16	26	1.97
47414036--47414191	82	1.9	81	86	3	224	28	28	16	26	1.97
47432855--47432991	48	2.9	48	94	0	238	29	25	19	24	1.98
47436225--47436309	42	2.0	42	95	0	152	23	16	18	41	1.90
47436855--47436912	27	2.1	27	81	12	66	36	25	12	25	1.91
47437074--47437128	22	2.5	22	96	0	101	16	27	20	36	1.93
47440573--47440617	20	2.3	20	88	3	65	24	17	31	26	1.97
47440608--47440746	60	2.3	60	83	10	160	30	20	23	25	1.98
47441606--47441638	18	1.9	17	88	11	50	42	12	15	30	1.83
47454730--47454768	20	2.0	20	89	0	60	20	41	25	12	1.88
47456355--47456415	28	2.1	29	90	3	97	32	3	22	40	1.70
47457222--47457303	37	2.2	37	93	4	139	43	17	4	34	1.70
47461051--47461132	43	1.9	43	87	0	119	28	18	24	29	1.98
47464852--47465038	101	1.9	101	88	2	286	25	18	26	29	1.98
47464852--47465044	50	3.8	51	81	5	205	25	18	25	30	1.98
47472299--47472490	50	3.8	50	78	7	176	25	17	27	30	1.97
47474331--47474374	22	2.0	22	86	0	61	52	4	0	43	1.22
47474612--47474670	29	2.0	29	86	0	82	38	8	11	40	1.72
47488735--47488790	20	2.8	20	89	2	78	39	12	3	44	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47489829--47489892	18	3.4	18	70	19	58	56	15	7	20	1.64
47489821--47489898	39	2.0	39	94	0	138	51	17	10	20	1.74
47499735--47499774	18	2.2	18	86	4	53	62	0	30	7	1.23
47505153--47505322	43	4.0	43	74	13	152	30	27	17	24	1.97
47513572--47513719	43	3.4	43	85	0	197	32	25	14	27	1.95
47513572--47513753	43	4.2	43	86	0	193	31	24	14	29	1.95
47523937--47524108	93	1.8	93	93	2	301	29	29	20	20	1.98
47523930--47524105	46	3.8	46	77	14	200	30	29	19	20	1.97
47531621--47531890	39	6.9	39	89	0	407	24	28	24	22	1.99
47531621--47531890	116	2.3	117	90	0	425	24	28	24	22	1.99
47535001--47535036	17	2.0	20	84	15	51	66	0	11	22	1.22
47536642--47536688	21	2.2	22	84	3	60	57	12	8	21	1.62
47542761--47542818	17	3.6	16	75	15	50	37	1	3	56	1.26
47545692--47545730	17	2.3	17	95	0	69	53	12	2	30	1.52
47545567--47545832	140	1.9	140	98	0	514	34	22	6	36	1.80
47545914--47545940	6	4.5	6	100	0	54	0	33	0	66	0.92
47548110--47548145	17	2.1	17	94	0	63	47	16	19	16	1.83
47548334--47548481	65	2.3	65	86	2	208	20	20	23	35	1.96
47548538--47548583	24	2.0	24	86	4	67	17	21	21	39	1.93
47548806--47548884	40	2.0	40	94	0	140	45	10	16	27	1.79
47550206--47550237	12	2.6	13	90	9	50	50	25	6	18	1.70
47552940--47553096	42	3.7	43	78	7	140	27	25	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47552948--47553098	44	3.5	43	76	14	150	27	24	20	27	1.99
47569871--47570074	43	4.9	43	78	7	163	24	29	20	25	1.99
47569951--47570115	43	3.9	43	84	5	185	23	29	21	24	1.99
47570565--47570723	80	2.0	81	82	6	198	33	21	7	37	1.82
47575243--47575413	38	4.4	38	83	7	186	30	25	22	22	1.99
47576681--47576770	44	2.0	44	100	0	180	36	22	8	32	1.85
47582186--47582212	10	2.7	10	100	0	54	51	11	29	7	1.64
47585607--47585791	40	4.6	40	93	1	300	25	27	22	24	2.00
47588544--47588721	27	6.6	27	81	5	180	28	28	16	26	1.97
47588565--47588720	82	1.9	81	86	3	224	28	28	16	26	1.97
47596701--47596876	27	6.6	27	79	5	115	27	28	16	26	1.97
47596721--47596875	27	5.7	27	79	6	143	28	29	16	25	1.97
47596701--47596876	54	3.3	55	80	7	200	27	28	16	26	1.97
47596721--47596875	81	1.9	81	85	5	215	28	29	16	25	1.97
47602509--47602598	44	2.0	44	100	0	180	36	22	8	32	1.85
47605525--47605648	43	2.9	43	85	1	160	21	30	20	26	1.98
47607359--47607388	15	2.1	15	93	6	53	36	26	6	30	1.82
47616815--47616922	54	2.0	54	94	0	189	38	7	21	32	1.81
47620253--47620360	54	2.0	54	94	0	189	38	7	21	32	1.81
47624487--47624519	15	2.2	16	89	10	52	30	3	12	54	1.52
47627895--47628074	42	4.2	43	86	3	206	26	28	19	25	1.99
47627890--47628074	85	2.2	85	81	9	225	27	28	19	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47629903--47629985	25	3.4	25	84	1	96	26	19	21	32	1.97
47630190--47630404	27	8.0	27	81	4	236	22	21	20	36	1.95
47630190--47630404	81	2.7	80	84	4	261	22	21	20	36	1.95
47630396--47630602	81	2.6	81	83	5	242	28	7	21	41	1.81
47630396--47630602	27	7.7	27	82	5	215	28	7	21	41	1.81
47630618--47630773	27	5.8	27	87	3	206	40	7	21	30	1.81
47630613--47630773	54	3.0	54	86	0	232	40	8	21	29	1.82
47630397--47630926	27	19.9	27	77	7	199	33	8	20	37	1.83
47630763--47630921	53	3.0	52	82	2	183	30	9	20	40	1.84
47630769--47630928	80	2.0	82	87	2	234	30	9	20	40	1.83
47632601--47632652	25	2.1	25	82	3	61	28	19	17	34	1.94
47632615--47632702	25	3.5	25	88	0	131	25	23	23	27	2.00
47632907--47633202	27	11.0	27	90	0	430	23	20	20	36	1.95
47633138--47633373	54	4.4	53	76	8	194	29	13	19	37	1.90
47633167--47633373	27	7.7	26	76	8	166	29	11	20	38	1.88
47633367--47633546	27	6.7	27	91	0	261	41	9	21	28	1.84
47633538--47633698	27	6.0	27	75	11	134	32	12	16	38	1.86
47633548--47633698	80	1.9	81	84	4	207	31	12	15	40	1.85
47633636--47633712	27	2.9	27	82	3	75	37	9	12	40	1.76
47633556--47633712	54	2.9	53	76	11	149	33	12	14	39	1.83
47635953--47636047	25	3.8	25	94	2	156	25	24	26	24	2.00
47636252--47636520	27	10.0	27	88	0	358	24	20	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47636483--47636718	27	8.8	27	75	10	171	29	10	20	39	1.86
47636510--47636718	54	3.9	54	85	4	210	29	9	21	40	1.84
47636563--47636723	27	6.0	27	86	2	189	29	8	21	40	1.82
47636566--47636752	27	6.9	27	79	8	134	30	8	21	39	1.82
47636563--47636723	81	2.0	81	86	2	225	29	8	21	40	1.82
47636683--47636941	54	4.8	54	85	0	266	40	9	20	30	1.83
47636593--47636745	81	1.9	81	83	2	200	30	7	22	40	1.80
47636711--47636941	27	8.6	27	91	0	318	41	9	20	29	1.84
47636937--47637096	27	6.0	27	72	8	112	31	11	18	38	1.86
47636945--47637102	80	2.0	82	85	2	221	30	11	19	38	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362