genome.fa.s8.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  148  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49230520--49230631	38	2.8	40	78	10	131	25	30	22	22	1.99
49230602--49230710	43	2.5	43	84	11	127	28	26	20	24	1.99
49233729--49233802	29	2.6	29	89	4	105	25	16	32	25	1.96
49241838--49241911	29	2.6	29	89	4	105	25	16	32	25	1.96
49245608--49245661	23	2.5	22	87	6	74	25	0	18	55	1.43
49245594--49245661	9	7.9	9	70	26	58	23	0	19	57	1.41
49245663--49245740	38	2.1	38	92	0	129	25	23	24	26	2.00
49247708--49247757	19	2.6	20	81	9	59	70	4	22	4	1.21
49247994--49248032	20	2.0	20	100	0	78	46	5	38	10	1.60
49247995--49248038	20	2.2	20	91	0	70	54	4	31	9	1.52
49249636--49249668	14	2.2	16	89	10	52	33	0	6	60	1.21
49260935--49261110	46	3.8	46	75	4	183	23	21	27	27	1.99
49260931--49261102	93	1.8	93	89	0	272	23	21	28	26	1.99
49265387--49265454	21	3.2	20	80	12	66	76	4	17	1	1.03
49265398--49265454	5	11.0	5	77	17	55	77	3	17	1	1.00
49265398--49265454	16	3.7	14	80	17	60	77	3	17	1	1.00
49265502--49265532	12	2.6	12	100	0	62	45	12	16	25	1.83
49265535--49265559	12	2.1	12	100	0	50	76	0	16	8	1.02
49265529--49265571	18	2.3	18	84	4	50	69	2	18	9	1.26
49265535--49265616	30	2.7	31	81	5	105	65	1	20	12	1.32
49267818--49267914	30	3.2	30	77	2	106	28	26	15	28	1.96
49270814--49270863	15	3.4	15	86	2	66	16	18	6	60	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49273251--49273422	46	3.8	46	78	8	192	22	19	29	29	1.98
49275468--49275608	60	2.4	59	83	7	169	27	26	19	26	1.99
49278303--49278339	19	1.9	19	94	0	65	35	18	10	35	1.86
49279473--49279507	18	1.9	18	94	0	61	37	11	11	40	1.77
49279931--49280167	72	3.3	72	89	4	354	23	6	15	54	1.64
49282214--49282277	13	4.9	13	84	0	74	35	21	7	34	1.83
49282214--49282277	26	2.5	26	78	0	83	35	21	7	34	1.83
49296789--49296822	15	2.3	15	94	0	59	17	35	26	20	1.95
49296745--49296866	59	2.1	59	100	0	244	23	26	21	28	1.99
49299421--49299488	28	2.4	28	90	4	102	27	11	25	35	1.91
49306703--49306773	28	2.5	28	88	6	108	29	12	25	32	1.93
49309320--49309356	17	2.1	19	90	10	60	32	27	10	29	1.90
49318671--49318704	12	2.9	12	91	4	52	41	0	0	58	0.98
49319030--49319067	20	1.9	20	88	0	58	57	5	0	36	1.21
49319311--49319369	31	1.9	31	86	13	86	33	0	5	61	1.18
49324315--49324374	20	3.0	20	97	0	111	13	30	36	20	1.90
49334854--49334984	66	1.9	69	80	9	151	32	14	32	20	1.93
49337288--49337315	13	2.2	13	100	0	56	14	0	35	50	1.43
49340741--49340957	40	5.5	40	87	5	266	23	23	28	25	1.99
49352249--49352307	27	2.1	28	81	3	66	32	5	8	54	1.53
49354230--49354348	16	7.3	16	72	14	100	42	6	15	35	1.74
49354230--49354359	45	3.1	45	80	15	170	41	6	16	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49357696--49357726	16	1.9	16	93	0	53	35	22	0	41	1.54
49357693--49357732	20	2.0	20	85	0	53	37	22	0	40	1.54
49357917--49358171	55	4.8	53	78	9	245	21	25	16	36	1.94
49361250--49361302	23	2.4	22	76	20	56	9	18	1	69	1.25
49367664--49367737	36	2.1	36	100	0	148	27	21	24	27	1.99
49369064--49369139	28	2.7	27	86	9	100	27	14	25	32	1.94
49376809--49376884	28	2.7	27	86	9	100	27	14	25	32	1.94
49381482--49381512	16	1.9	16	93	0	53	35	22	0	41	1.54
49381703--49381957	55	4.8	53	81	8	229	21	25	16	36	1.94
49381750--49381950	108	1.8	110	89	4	318	22	25	16	34	1.95
49386087--49386446	49	7.5	49	96	1	642	28	30	7	32	1.85
49386126--49386207	27	3.2	27	62	28	70	31	30	4	32	1.79
49386087--49386446	96	3.7	97	94	3	638	28	30	7	32	1.85
49386317--49386399	27	3.3	27	63	27	72	32	30	4	32	1.79
49392055--49392151	30	3.2	30	71	8	81	28	15	27	27	1.96
49394933--49395187	55	4.8	54	78	8	231	22	25	15	36	1.94
49397288--49397387	51	2.0	51	86	4	139	35	27	15	23	1.94
49397357--49397472	43	2.7	42	79	1	133	31	26	17	24	1.97
49400512--49400589	30	2.6	30	85	4	104	55	15	14	15	1.70
49400512--49400582	15	4.8	14	84	8	88	54	15	15	14	1.71
49402015--49402061	23	2.0	23	95	0	85	19	31	31	17	1.94
49403955--49404037	43	1.9	43	95	0	148	30	31	19	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49407044--49407113	28	2.5	28	78	0	68	30	8	28	32	1.87
49407334--49407381	15	3.3	15	73	5	53	31	0	25	43	1.55
49407328--49407387	29	2.1	29	90	0	93	30	0	28	41	1.56
49409525--49409609	42	2.0	42	97	0	161	32	16	15	35	1.90
49410656--49410711	30	1.9	28	85	7	76	12	30	3	53	1.55
49411741--49411775	19	1.9	19	88	11	56	14	5	11	68	1.37
49412018--49412065	15	3.3	15	73	5	53	31	0	25	43	1.55
49412012--49412071	29	2.1	29	90	0	93	30	0	28	41	1.56
49415893--49416015	37	3.4	37	82	5	151	28	17	26	26	1.98
49416003--49416344	48	7.7	42	77	11	192	28	16	24	30	1.96
49416028--49416213	48	3.9	48	92	1	284	31	17	21	29	1.96
49416172--49416325	84	1.8	84	82	0	200	25	14	26	32	1.95
49421332--49421507	27	6.5	27	79	4	167	28	28	16	26	1.97
49421332--49421508	55	3.3	53	81	6	203	28	28	16	27	1.97
49421352--49421507	82	1.9	81	85	3	215	28	28	16	26	1.97
49429455--49429629	27	6.5	27	79	5	167	28	28	16	26	1.97
49429455--49429630	54	3.3	53	81	6	203	28	28	16	26	1.97
49429475--49429629	81	1.9	81	86	2	222	28	28	16	26	1.97
49431795--49431867	35	2.1	35	97	0	137	35	5	17	41	1.73
49435949--49436126	27	6.6	27	78	7	146	28	28	16	26	1.97
49444658--49444834	27	6.6	26	80	7	169	26	16	28	28	1.97
49444659--49444814	82	1.9	81	86	3	224	26	16	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49444658--49444834	55	3.3	53	82	7	205	26	16	28	28	1.97
49448269--49448475	46	4.5	44	81	11	211	23	30	19	27	1.98
49448269--49448478	94	2.3	90	84	10	257	23	30	19	26	1.98
49449660--49449684	13	1.9	13	100	0	50	64	8	0	28	1.22
49449909--49449957	10	4.8	10	80	14	55	40	22	22	14	1.90
49449909--49449957	21	2.4	21	89	3	73	40	22	22	14	1.90
49457016--49457200	40	4.7	40	82	6	198	26	27	21	24	1.99
49457018--49457200	79	2.3	80	84	7	230	26	26	21	25	2.00
49459824--49460006	40	4.6	40	86	5	237	21	21	28	27	1.99
49459824--49460006	80	2.3	80	89	3	271	21	21	28	27	1.99
49459824--49460027	40	5.1	40	85	4	234	22	22	28	26	1.99
49471633--49471756	43	2.9	43	81	10	146	25	14	25	34	1.94
49486152--49486229	34	2.3	33	85	8	104	26	23	24	25	2.00
49489535--49489732	55	3.6	55	83	6	235	20	26	18	34	1.95
49498856--49499033	46	3.8	46	78	11	211	29	28	20	21	1.98
49498863--49499034	93	1.8	93	93	2	301	28	29	20	21	1.98
49504863--49505070	55	3.8	54	82	6	235	22	24	16	36	1.95
49509165--49509251	43	2.0	43	86	4	122	28	27	14	28	1.96
49511071--49511107	11	3.5	11	82	17	51	59	16	2	21	1.49
49511269--49511356	40	2.2	41	87	4	133	50	11	10	28	1.71
49516510--49516689	56	3.2	56	91	0	306	28	13	22	35	1.92
49517041--49517162	63	1.9	63	96	0	226	45	18	19	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49530576--49530616	21	2.0	21	100	0	82	73	0	19	7	1.07
49533650--49533731	30	2.7	30	78	0	101	29	18	24	28	1.98
49535982--49536019	16	2.3	17	86	4	51	7	21	2	68	1.28
49536028--49536072	12	3.8	12	81	0	54	8	24	0	66	1.20
49536021--49536080	30	2.0	30	83	0	75	15	23	0	61	1.33
49536023--49536072	24	2.1	24	84	0	64	14	24	0	62	1.32
49536029--49536090	30	2.1	30	81	0	70	11	20	3	64	1.40
49536140--49536207	5	13.0	5	74	20	59	2	16	2	77	1.00
49536140--49536196	16	3.7	14	82	15	60	3	17	1	77	1.00
49536140--49536207	21	3.2	21	78	12	68	2	16	2	77	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362