genome.fa.s8.2.7.7.80.10.50.1000.198.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  198  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66558990--66559155	47	3.5	47	95	0	287	35	10	27	26	1.89
66559066--66559137	22	3.1	22	64	24	58	33	13	29	23	1.93
66565007--66565080	18	4.1	18	75	1	76	31	13	24	31	1.93
66565852--66565959	34	3.2	34	79	7	94	29	21	19	29	1.97
66571003--66571198	94	2.1	95	98	0	376	32	20	6	39	1.79
66573055--66573101	23	2.0	23	95	0	85	31	27	10	29	1.90
66578629--66578804	46	3.8	46	79	12	216	21	21	28	28	1.98
66578626--66578796	93	1.8	93	96	0	315	21	21	28	28	1.99
66582512--66582553	22	1.9	22	90	9	68	38	4	0	57	1.20
66582841--66582880	19	2.1	19	95	0	71	42	7	5	45	1.54
66583262--66583299	16	2.3	16	90	4	58	34	2	0	63	1.09
66588287--66588317	16	1.9	16	93	0	53	22	3	3	70	1.16
66589763--66589852	43	2.1	43	93	0	153	30	25	22	22	1.99
66589831--66589866	18	2.0	18	100	0	72	38	22	11	27	1.88
66589788--66589913	61	2.1	61	90	0	198	31	23	19	26	1.98
66590209--66590256	21	2.3	21	96	0	87	2	58	16	22	1.49
66590812--66590849	19	2.1	18	85	9	51	52	0	7	39	1.31
66596045--66597298	476	2.6	477	99	0	2458	41	11	11	35	1.76
66601747--66601778	15	2.1	15	94	0	55	31	9	0	59	1.29
66601810--66601849	21	1.9	21	89	0	62	42	30	7	20	1.79
66602380--66602433	25	2.2	25	100	0	108	40	24	7	27	1.81
66602847--66603147	41	7.4	41	86	2	383	18	20	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66609108--66609141	18	1.9	18	88	5	52	41	17	0	41	1.50
66611949--66611991	16	2.7	16	77	0	50	32	2	4	60	1.30
66613117--66613144	14	2.0	14	100	0	56	64	7	14	14	1.48
66614137--66614198	21	3.0	21	81	4	65	17	22	14	45	1.85
66616208--66616299	27	3.4	27	85	5	123	28	23	7	40	1.82
66616183--66616309	54	2.4	53	78	11	132	30	23	9	36	1.87
66616331--66616427	27	3.6	26	81	5	113	40	20	9	29	1.84
66616298--66616430	54	2.5	53	79	8	135	37	19	12	30	1.89
66616331--66616469	27	5.1	27	75	9	104	41	19	8	30	1.82
66616410--66616511	29	3.6	28	79	6	100	45	18	6	29	1.75
66616463--66616518	27	2.1	26	87	9	78	39	12	10	37	1.78
66616580--66616631	27	1.9	27	84	7	70	32	19	23	25	1.97
66617445--66617514	25	2.8	24	91	4	104	24	28	24	22	1.99
66617662--66617753	42	2.2	42	98	0	175	30	14	21	33	1.93
66617777--66617922	31	4.7	31	92	0	240	30	16	23	29	1.96
66620175--66620504	48	6.8	48	83	2	383	27	17	29	25	1.97
66620175--66620505	96	3.4	95	86	4	430	27	17	29	25	1.97
66620172--66620503	144	2.3	144	86	2	450	27	17	29	25	1.97
66622708--66622890	46	4.0	46	92	0	276	24	31	9	34	1.88
66622869--66623195	47	7.0	47	92	0	476	26	29	10	33	1.90
66622976--66623053	25	3.2	25	64	29	69	29	29	10	30	1.90
66623133--66623196	25	2.7	23	72	15	60	31	29	3	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66628859--66628928	35	2.0	35	100	0	140	22	17	20	40	1.92
66630302--66630434	35	3.8	36	77	14	125	25	18	15	40	1.90
66634081--66635711	820	2.0	826	88	2	2415	37	21	10	30	1.88
66638934--66638965	15	2.0	17	88	11	50	31	3	18	46	1.65
66639075--66639389	47	6.8	45	74	10	224	27	20	29	23	1.98
66645815--66645851	14	2.8	13	88	11	58	21	5	10	62	1.48
66651811--66651848	20	1.9	19	89	5	58	15	7	0	76	1.01
66658050--66658103	27	2.0	27	85	0	72	38	7	14	38	1.75
66658329--66658561	49	4.7	50	80	2	263	25	18	27	28	1.98
66667396--66667620	40	5.7	40	84	5	251	26	27	21	24	1.99
66667398--66667620	119	1.9	120	82	6	283	26	27	21	25	1.99
66683500--66683632	55	2.4	55	82	0	149	15	29	28	27	1.96
66690261--66690443	79	2.3	81	83	7	223	24	22	27	24	2.00
66690262--66690445	40	4.6	40	82	9	207	24	22	28	24	2.00
66690314--66690478	79	2.1	79	83	6	201	26	21	27	24	1.99
66698389--66698572	40	4.6	40	82	9	207	24	22	28	24	2.00
66698389--66698605	79	2.7	78	79	9	233	25	22	28	24	1.99
66711275--66711357	41	2.0	41	95	0	148	18	13	25	43	1.86
66716343--66716384	16	2.6	16	100	0	84	30	9	26	33	1.88
66720435--66720572	72	1.9	70	81	11	165	25	21	0	52	1.51
66730681--66730746	32	2.1	32	100	0	132	31	27	9	31	1.88
66732753--66732949	45	4.6	44	76	10	201	31	26	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66732740--66732949	86	2.4	86	85	6	291	31	26	16	25	1.96
66732660--66732947	43	6.7	45	78	8	221	29	28	15	26	1.96
66735100--66735317	40	5.5	40	90	2	316	24	24	26	24	2.00
66737282--66737310	14	2.0	15	93	6	51	51	20	0	27	1.47
66752669--66752693	13	1.9	13	100	0	50	16	24	20	40	1.91
66758247--66758469	43	5.2	43	86	2	304	25	14	28	31	1.95
66763330--66763395	33	2.0	33	100	0	132	36	0	30	33	1.58
66766175--66766210	14	2.6	14	100	0	72	36	27	13	22	1.92
66768148--66768255	26	4.2	26	93	0	189	32	7	24	36	1.83
66769667--66769719	26	2.0	26	82	7	63	37	20	15	26	1.92
66770939--66770977	13	3.0	13	96	0	69	15	25	38	20	1.92
66772625--66772792	40	4.2	40	88	3	241	27	26	22	23	1.99
66780784--66781000	40	5.5	40	93	1	348	25	27	23	23	2.00
66785585--66785645	30	2.0	30	87	0	86	31	22	6	39	1.80
66792919--66792957	17	2.3	17	90	0	60	20	5	12	61	1.50
66795576--66795620	20	2.1	22	84	12	58	26	6	22	44	1.77
66795617--66795799	40	4.6	40	81	8	221	25	23	26	25	2.00
66795617--66795831	79	2.7	80	83	5	251	24	23	26	26	2.00
66807551--66807801	68	3.8	64	76	9	206	29	16	29	24	1.97
66808280--66808388	54	2.0	54	98	0	209	32	19	18	30	1.95
66814856--66814884	13	2.2	13	100	0	58	55	13	0	31	1.39
66834070--66834617	47	11.6	47	91	2	764	27	29	9	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66836058--66836177	56	2.1	56	98	0	231	22	23	9	45	1.81
66842182--66842264	42	2.0	42	92	0	139	24	30	13	32	1.93
66844249--66844332	44	1.9	44	85	4	116	39	29	13	17	1.88
66853382--66853592	77	2.7	77	78	2	235	24	20	24	30	1.99
66860008--66860131	46	2.7	47	83	9	166	26	20	31	21	1.98
66862843--66862918	24	3.2	24	94	0	125	51	15	9	23	1.72
66865082--66865234	72	2.1	72	95	0	270	18	32	11	37	1.87
66877180--66877878	47	14.6	47	90	4	904	28	29	9	33	1.88
66879325--66879444	56	2.1	56	98	0	231	22	23	9	45	1.81
66889035--66889140	53	2.0	53	98	0	203	25	13	21	39	1.90
66894968--66895012	18	2.4	19	77	7	56	55	0	4	40	1.20
66896713--66896841	42	3.1	42	89	0	186	17	28	31	22	1.97
66903962--66904187	40	5.7	40	83	4	235	24	21	27	25	1.99
66903992--66904211	80	2.8	80	82	5	234	25	22	27	25	2.00
66912171--66912395	40	5.7	40	84	5	253	24	22	28	24	1.99
66912171--66912394	79	2.8	79	85	4	274	24	22	28	25	2.00
66912204--66912418	79	2.7	78	82	7	240	24	23	28	24	2.00
66920381--66920599	40	5.5	40	85	4	237	24	21	28	25	1.99
66922472--66922639	40	4.2	40	97	0	309	22	20	29	27	1.98
66922472--66922670	80	2.5	80	89	0	245	23	21	27	27	1.99
66926721--66926762	20	2.2	19	86	4	57	2	45	0	52	1.13
66929974--66930011	19	2.0	20	84	5	51	47	18	0	34	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66932334--66932363	8	3.6	8	95	4	51	63	0	0	36	0.95
66932391--66932433	19	2.3	19	81	14	54	37	4	4	53	1.43
66933144--66933181	17	2.2	18	85	4	51	60	2	10	26	1.43
66939127--66939157	5	6.2	5	100	0	62	77	0	0	22	0.77
66942657--66942687	14	2.2	14	100	0	62	12	29	12	45	1.80
66948636--66948667	12	2.7	12	95	0	55	12	25	40	21	1.88
66950520--66950675	42	3.7	43	82	5	174	31	25	15	28	1.96
66952628--66952682	27	2.0	27	96	0	101	29	29	10	30	1.91
66968116--66968170	27	2.0	27	100	0	110	25	0	18	56	1.42
66970167--66970197	16	1.9	16	100	0	62	32	12	12	41	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362