genome.fa.s8.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  134  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44350745--44351197	47	9.9	47	95	4	806	30	28	8	32	1.86
44350745--44351197	92	5.0	94	95	4	806	30	28	8	32	1.86
44350745--44351197	139	3.3	140	95	4	804	30	28	8	32	1.86
44355089--44355279	40	4.8	39	78	5	165	23	25	23	28	2.00
44355086--44355279	80	2.4	80	81	5	207	23	25	23	27	2.00
44355582--44355662	28	2.8	29	81	11	103	28	33	13	24	1.93
44355644--44355748	43	2.4	45	95	3	187	26	35	15	22	1.94
44356497--44357240	389	2.0	373	89	7	1133	29	20	15	34	1.94
44358147--44358225	37	2.1	37	90	0	122	25	31	18	24	1.98
44358343--44358914	47	12.1	47	96	1	1004	29	30	8	31	1.87
44362337--44362452	40	2.9	40	83	1	135	24	24	22	29	1.99
44362354--44362527	40	4.4	40	76	5	117	23	25	22	27	2.00
44362337--44362527	80	2.4	81	81	6	203	23	25	22	28	1.99
44362835--44362913	29	2.7	29	86	5	106	27	32	15	24	1.95
44362895--44362997	43	2.4	43	98	0	197	26	35	14	23	1.93
44364857--44364934	36	2.1	37	88	2	113	25	32	17	24	1.97
44365052--44365578	47	11.1	47	93	4	878	29	30	8	31	1.87
44365052--44365578	96	5.5	94	95	2	878	29	30	8	31	1.87
44365052--44365578	238	2.2	238	95	0	948	29	30	8	31	1.87
44382994--44383027	13	2.6	13	85	0	50	35	17	5	41	1.74
44387803--44387856	27	2.0	27	85	0	72	38	16	14	29	1.89
44392691--44393266	297	1.9	298	84	1	769	28	15	25	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44408692--44408745	27	2.0	27	85	0	72	38	16	14	29	1.89
44413626--44414201	297	1.9	298	84	1	760	27	16	25	30	1.96
44416450--44416501	27	1.9	27	88	0	77	36	17	17	28	1.92
44418348--44418532	40	4.6	40	88	4	248	24	24	26	24	2.00
44437429--44437555	44	3.0	43	81	12	152	29	28	18	24	1.98
44438899--44438974	36	2.1	36	100	0	152	23	2	18	55	1.55
44449067--44449247	63	2.9	62	76	16	176	29	16	29	23	1.96
44450229--44450259	16	1.9	16	93	0	53	51	0	12	35	1.40
44456425--44456538	52	2.2	52	93	3	194	37	13	23	25	1.91
44456424--44456526	24	4.1	25	84	10	138	39	13	22	24	1.90
44456562--44456731	51	3.3	51	87	3	245	31	14	24	29	1.95
44468926--44469102	40	4.5	40	85	9	206	25	28	22	23	1.99
44491656--44491704	25	2.0	25	95	0	89	32	2	12	53	1.50
44497493--44497665	46	3.7	46	72	13	174	23	19	26	31	1.98
44515205--44515382	98	1.8	97	84	3	241	24	29	20	25	1.99
44515204--44515383	49	3.7	49	77	5	186	24	28	21	25	1.99
44515417--44515615	46	4.2	47	69	10	122	25	24	19	31	1.98
44517223--44517276	29	1.9	27	82	14	65	46	11	3	38	1.57
44522551--44522666	45	2.7	44	79	10	134	29	25	19	25	1.99
44524091--44524192	29	3.6	28	78	6	89	28	30	13	27	1.94
44524263--44524298	18	2.1	18	89	5	56	19	33	22	25	1.97
44526602--44527115	281	1.8	280	95	0	938	23	33	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44528859--44528973	29	4.0	28	80	6	106	26	28	15	28	1.96
44529037--44529072	18	2.1	17	89	5	54	19	33	22	25	1.97
44529037--44529087	19	2.8	18	82	5	59	17	35	23	23	1.95
44531332--44531360	14	2.0	15	93	6	51	51	20	0	27	1.47
44535788--44535909	48	2.5	48	84	2	156	34	28	19	17	1.94
44538234--44538363	46	2.8	46	86	5	172	30	21	27	20	1.98
44538241--44538450	47	4.5	46	77	12	178	30	20	27	22	1.98
44539577--44539615	21	1.9	20	85	15	53	12	35	28	23	1.91
44543424--44543650	40	5.8	40	91	5	358	23	28	23	24	1.99
44543398--44543647	79	3.2	78	88	5	355	24	28	22	25	2.00
44551521--44551792	40	6.8	40	92	0	420	22	29	23	24	1.99
44556792--44556949	68	2.3	68	77	11	160	20	27	15	35	1.94
44559883--44560099	46	4.6	45	76	13	163	27	19	29	22	1.98
44563242--44563353	27	4.1	27	83	11	140	38	23	23	15	1.92
44564780--44564837	24	2.4	24	100	0	116	29	37	0	32	1.58
44579048--44579091	17	2.6	17	77	0	52	54	2	9	34	1.44
44579278--44579327	24	2.0	26	84	7	68	54	4	2	40	1.31
44579827--44579907	39	2.1	39	95	0	144	24	27	4	43	1.75
44583879--44583912	15	2.3	15	90	10	52	55	0	14	29	1.40
44588942--44589001	30	2.0	30	90	0	93	28	25	8	38	1.84
44596385--44596445	30	2.0	30	83	0	77	27	22	9	39	1.86
44607393--44607572	49	3.7	49	76	5	168	24	27	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44609415--44609481	29	2.4	27	77	20	68	44	8	4	41	1.56
44614742--44614857	45	2.7	44	78	10	125	30	25	19	25	1.98
44617742--44617919	27	6.6	26	80	6	169	26	16	28	28	1.97
44617743--44617898	82	1.9	81	86	3	224	26	16	28	28	1.97
44617739--44617919	82	2.2	81	82	2	220	27	16	28	28	1.97
44617824--44617930	27	3.9	27	81	1	79	26	15	28	28	1.96
44619612--44619722	29	3.9	28	74	8	71	27	30	13	27	1.94
44619793--44619828	18	2.1	18	89	5	56	19	33	22	25	1.97
44622132--44622697	281	2.0	281	95	0	1008	23	33	16	26	1.96
44624433--44624547	29	4.0	28	78	6	106	27	29	14	27	1.95
44624611--44624646	18	2.1	18	89	5	56	19	33	22	25	1.97
44626910--44626938	14	2.0	15	93	6	51	51	20	0	27	1.47
44631357--44631477	48	2.5	47	82	6	145	34	28	19	17	1.95
44633799--44633928	46	2.8	46	83	5	163	30	20	27	20	1.98
44635139--44635177	21	1.9	20	85	15	53	12	35	28	23	1.91
44641116--44641232	43	2.8	41	80	7	119	24	20	27	27	1.99
44641121--44641265	42	3.4	41	79	6	114	26	21	26	25	1.99
44642664--44642754	27	3.4	27	81	3	112	30	23	7	38	1.83
44642664--44642764	26	3.8	25	75	13	87	31	21	8	37	1.85
44642753--44642908	54	2.9	54	81	3	154	39	19	10	30	1.86
44642753--44642909	81	1.9	81	84	7	212	39	19	10	29	1.86
44642786--44642964	81	2.2	82	85	5	231	40	20	7	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44642786--44642966	27	6.7	27	83	0	200	39	20	8	31	1.82
44643871--44643937	25	2.7	24	88	4	89	25	28	23	22	1.99
44643871--44643953	25	3.4	24	83	8	78	28	24	22	24	1.99
44644088--44644175	42	2.1	42	93	0	149	34	14	18	32	1.91
44644203--44644300	31	3.2	31	94	0	169	30	14	26	28	1.95
44650596--44650674	28	2.8	28	84	0	86	34	10	25	30	1.89
44654999--44655229	40	5.8	40	93	2	376	22	28	23	25	1.99
44663111--44663375	77	3.4	79	92	3	416	23	29	22	24	1.99
44663111--44663375	39	6.8	39	94	3	403	23	29	22	24	1.99
44716191--44716414	40	5.7	40	86	6	296	24	22	27	25	2.00
44716191--44716414	79	2.8	80	86	6	296	24	22	27	25	2.00
44724053--44724277	40	5.7	40	86	5	287	24	21	27	26	1.99
44726099--44726131	13	2.4	14	90	5	50	63	12	0	24	1.28
44727076--44727108	17	1.9	17	93	0	57	57	18	3	21	1.53
44727606--44727906	56	5.7	55	71	17	228	31	25	14	28	1.95
44727625--44727906	150	1.9	148	86	4	406	31	25	14	28	1.94
44727683--44727860	94	1.9	94	89	0	275	33	24	14	27	1.94
44727891--44728028	43	3.3	43	85	3	190	30	28	17	23	1.97
44732418--44732450	13	2.4	14	90	5	50	63	12	0	24	1.28
44733952--44734358	56	7.5	56	86	5	459	35	25	12	27	1.91
44734340--44734559	43	5.1	43	88	3	327	30	26	15	26	1.96
44734340--44734559	85	2.6	86	89	3	336	30	26	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44756934--44756977	23	1.9	23	86	9	63	43	18	6	31	1.76
44767713--44767822	40	2.7	40	80	6	125	31	28	13	26	1.94
44770176--44770214	17	2.3	17	95	0	69	28	20	10	41	1.85
44774353--44774528	68	2.6	68	76	13	150	21	28	17	33	1.95
44792566--44792695	50	2.6	49	89	3	181	29	28	17	24	1.97
44792566--44792752	101	1.9	99	86	4	268	27	29	17	25	1.98
44794569--44794659	46	2.0	46	93	0	155	38	12	21	27	1.89
44795714--44795755	18	2.3	18	84	8	50	45	11	19	23	1.83
44799818--44799993	46	3.8	46	76	11	171	21	18	29	30	1.97
44805689--44806002	27	11.6	27	84	4	373	27	15	28	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362