Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  314  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104895998--104896044
3
15.7
3
86
0
67
63
4
0
31
1.13
104899566--104899629
28
2.3
28
78
10
69
48
6
1
43
1.37
104904442--104904478
18
2.1
18
100
0
74
35
21
16
27
1.94
104905239--104905305
28
2.4
28
80
5
73
26
2
22
47
1.65
104907614--104907651
14
2.7
15
80
12
53
10
2
23
63
1.39
104907614--104907658
20
2.2
21
84
4
56
13
2
24
60
1.45
104939248--104939277
15
2.0
15
93
0
51
53
0
10
36
1.35
104942696--104943101
202
2.0
202
99
0
794
28
16
10
44
1.81
104952282--104952364
31
2.7
31
80
12
91
51
10
4
32
1.58
104954999--104955052
24
2.2
24
80
6
65
53
1
0
44
1.11
104955333--104955396
32
2.0
32
90
0
101
29
12
14
43
1.81
104956381--104956445
34
1.9
34
93
0
112
35
6
7
50
1.56
104960538--104960600
33
2.0
30
84
9
81
39
0
0
60
0.97
104961243--104961330
45
2.0
45
100
0
176
52
11
15
20
1.74
104969469--104969565
48
2.0
48
95
0
176
31
25
18
23
1.97
104971143--104971192
24
2.1
24
92
0
82
12
28
10
50
1.71
104971143--104971205
24
2.6
24
85
5
65
12
25
9
52
1.69
104974067--104974111
23
2.0
23
95
0
81
24
15
4
55
1.59
104976404--104976513
54
2.0
54
100
0
220
26
18
12
42
1.86
104981140--104981190
25
2.0
25
100
0
102
27
15
15
41
1.88
104989877--104989940
32
2.0
32
100
0
128
40
0
25
34
1.56
104993868--104993894
6
4.5
6
100
0
54
85
0
14
0
0.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104996966--104997058
46
2.0
46
100
0
186
30
27
8
33
1.87
105001306--105002736
715
2.0
716
94
0
2481
30
16
20
32
1.95
105010108--105010173
22
3.0
22
71
8
53
36
4
6
53
1.46
105011048--105011080
15
2.2
15
100
0
66
81
6
0
12
0.85
105014235--105014301
16
4.3
16
74
16
52
50
0
0
49
1.00
105014214--105014355
61
2.4
56
81
10
142
45
1
1
51
1.18
105014436--105014529
44
2.1
46
90
7
149
34
26
6
32
1.82
105014511--105014565
16
3.4
16
85
5
76
29
25
9
36
1.87
105016604--105016650
22
2.1
23
84
4
60
19
4
12
63
1.44
105017631--105017698
30
2.2
30
84
2
82
30
4
4
60
1.36
105017641--105018055
152
2.7
151
94
1
715
28
5
7
57
1.49
105029687--105029712
3
8.7
3
100
0
52
34
0
30
34
1.58
105045935--105046004
26
2.6
27
72
17
74
58
0
4
37
1.18
105046302--105046383
19
4.3
19
71
11
60
28
4
2
64
1.26
105046265--105046350
29
3.0
28
75
8
93
32
4
1
61
1.24
105046202--105046383
57
3.1
56
77
10
179
30
7
2
60
1.35
105046248--105046383
29
4.7
29
70
10
91
29
6
2
61
1.33
105046473--105046685
86
2.5
85
83
4
259
36
6
16
40
1.74
105050849--105050886
19
2.0
19
100
0
76
47
15
10
26
1.78
105054770--105054891
9
13.0
9
72
15
88
29
3
3
63
1.26
105054777--105054880
46
2.2
47
85
6
140
28
3
1
65
1.21
105057163--105057214
24
2.2
23
83
10
61
23
7
7
61
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105062361--105062436
35
2.3
32
79
6
80
35
17
21
26
1.95
105064410--105064493
44
1.9
44
85
4
116
36
13
25
25
1.91
105064502--105064713
47
4.4
45
72
15
156
37
15
22
25
1.92
105064585--105064899
54
6.0
54
75
10
247
36
15
23
24
1.94
105064538--105064769
101
2.3
101
95
0
410
37
14
22
25
1.92
105080489--105080682
100
1.9
99
84
7
259
25
19
12
41
1.87
105085755--105085805
14
3.6
14
73
21
52
64
0
0
35
0.94
105085747--105085791
20
2.4
18
85
10
63
68
0
2
28
1.01
105085753--105085806
29
1.9
29
88
7
85
64
0
0
35
0.94
105085753--105085791
20
2.0
20
90
9
64
69
0
0
30
0.89
105086557--105086625
28
2.5
28
79
9
70
47
0
0
52
1.00
105097690--105097759
28
2.4
30
88
4
99
55
0
1
42
1.08
105098129--105098246
41
2.9
41
87
1
139
36
22
21
20
1.95
105103248--105103878
120
5.2
120
94
2
1016
44
2
5
48
1.37
105103703--105103737
18
2.0
17
88
5
52
45
0
0
54
0.99
105103823--105103859
19
2.0
19
85
15
51
45
0
0
54
1.00
105104095--105104147
16
3.2
16
92
5
88
37
35
0
26
1.57
105106247--105106278
2
16.0
2
100
0
64
0
0
50
50
1.00
105108497--105108604
41
2.6
41
88
5
146
22
12
31
33
1.92
105108974--105109025
24
2.2
24
86
6
70
34
3
7
53
1.48
105112091--105112130
11
3.6
11
82
0
53
20
10
10
60
1.57
105113592--105113623
7
4.6
7
92
0
55
40
3
12
43
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105114048--105114126
38
2.0
40
80
9
92
53
3
1
41
1.27
105117822--105117966
74
2.0
74
100
0
290
30
20
22
26
1.98
105119286--105119315
5
6.0
5
100
0
60
40
0
0
60
0.97
105120557--105120611
27
2.0
27
89
6
85
52
0
7
40
1.29
105120656--105120753
45
2.2
44
80
10
110
57
3
10
29
1.47
105120792--105120939
26
5.7
25
72
10
100
59
5
6
29
1.44
105124647--105124708
28
2.2
28
91
0
97
32
6
30
30
1.83
105129961--105130022
28
2.2
28
91
0
97
32
6
30
30
1.83
105134997--105135082
40
2.2
40
97
0
163
20
24
30
24
1.99
105134997--105135097
40
2.6
42
86
13
153
22
23
29
23
1.99
105139714--105139799
40
2.2
40
97
0
163
20
22
30
26
1.98
105141531--105141608
25
3.2
25
80
5
79
33
21
23
21
1.97
105144038--105144531
132
3.7
132
76
7
367
27
18
19
34
1.95
105144200--105144510
131
2.4
133
78
4
315
27
19
19
34
1.96
105144200--105144571
133
2.8
131
76
4
354
26
19
18
35
1.95
105156044--105156603
132
4.2
132
88
2
804
29
19
24
26
1.99
105156046--105156603
263
2.1
262
89
2
789
29
19
24
26
1.99
105159420--105159867
131
3.4
131
78
4
438
27
20
19
33
1.96
105162811--105162928
58
2.0
58
100
0
236
26
10
11
51
1.70
105168039--105168083
2
23.0
2
82
13
58
46
0
2
51
1.13
105170184--105170256
31
2.4
31
79
4
85
34
4
8
53
1.50
105170343--105170481
60
2.3
61
84
7
171
42
15
16
25
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105175328--105175377
6
8.2
6
82
4
64
48
14
18
20
1.82
105175351--105175473
45
2.5
51
78
17
161
41
18
17
21
1.90
105175807--105175912
53
2.0
53
100
0
212
41
22
0
35
1.54
105175819--105175900
25
3.2
25
66
27
71
40
24
0
35
1.56
105176578--105176631
22
2.5
23
79
11
60
12
9
5
72
1.27
105176794--105176856
33
1.9
32
87
9
92
53
6
0
39
1.26
105184352--105184414
33
1.9
32
87
9
92
53
6
0
39
1.26
105194094--105194181
30
3.0
29
75
9
79
27
29
22
20
1.99
105196520--105196561
23
2.0
21
86
13
59
80
2
11
4
0.95
105204662--105204724
30
2.1
30
100
0
126
31
20
15
31
1.94
105205608--105205670
31
2.0
31
90
0
99
31
14
12
41
1.83
105205836--105205890
26
2.1
26
100
0
110
41
23
7
27
1.80
105210731--105210755
6
4.2
6
100
0
50
16
0
16
68
1.22
105222612--105222650
19
2.0
20
90
5
62
33
7
0
58
1.26
105226958--105227053
37
2.6
38
80
3
97
31
12
41
14
1.83
105227323--105227668
165
2.1
165
80
7
373
32
17
20
30
1.95
105228330--105228518
41
4.6
41
88
3
274
23
19
22
34
1.96
105230610--105230677
35
1.9
35
85
5
93
29
16
16
38
1.90
105238774--105238869
27
3.6
27
72
10
81
30
25
14
30
1.95
105241302--105241670
132
2.8
132
80
3
379
30
19
17
32
1.95
105244308--105244343
18
1.9
19
88
5
56
38
13
13
33
1.85
105251301--105251364
32
2.0
32
96
0
119
56
4
9
29
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105252961--105253075
50
2.3
51
89
3
178
38
14
21
25
1.92
105253065--105253182
31
3.8
31
81
0
110
27
17
27
27
1.98
105253253--105253368
49
2.4
48
87
4
155
26
15
28
29
1.96
105256323--105256382
30
2.0
30
90
6
95
58
11
3
26
1.49
105256415--105256457
22
2.0
22
85
0
59
55
9
11
23
1.64
105258015--105258239
74
3.0
73
88
5
319
31
20
12
35
1.90
105258247--105258271
12
2.1
12
100
0
50
68
0
0
32
0.90
105258342--105258392
25
2.1
25
88
3
77
45
1
1
50
1.24
105261014--105261057
20
2.0
23
87
12
67
47
0
9
43
1.35
105261030--105261080
25
2.0
25
84
0
66
50
1
5
41
1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362