Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  115  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37780035--37780343
153
2.0
153
98
0
591
41
18
5
34
1.74
37781684--37781719
18
2.0
18
100
0
72
38
33
0
27
1.57
37785867--37785944
29
2.7
29
84
4
95
43
8
11
35
1.72
37794930--37795009
42
1.9
42
82
5
99
22
35
21
21
1.96
37818118--37818156
11
3.7
11
80
13
55
38
12
17
30
1.88
37818204--37818299
25
3.8
26
86
6
126
27
21
21
29
1.99
37818519--37818592
30
2.4
31
88
2
105
32
20
25
21
1.97
37826017--37826071
11
5.5
10
79
12
60
36
10
18
34
1.86
37826119--37826175
25
2.3
25
84
6
71
28
19
28
24
1.98
37826379--37826461
30
2.7
31
85
3
107
32
19
26
21
1.97
37827575--37827623
20
2.7
18
77
22
57
51
4
2
42
1.32
37830205--37830348
46
3.1
46
73
14
134
29
27
19
22
1.98
37833946--37833992
20
2.4
20
85
3
60
55
6
6
31
1.51
37836029--37836112
22
4.0
22
70
9
84
30
14
7
47
1.71
37836016--37836096
41
2.0
41
97
0
153
29
12
8
49
1.70
37839060--37839298
42
5.7
42
78
5
232
44
15
20
19
1.87
37839058--37839294
84
2.8
84
86
0
330
43
16
20
20
1.88
37839044--37839297
21
12.2
21
70
5
140
43
16
20
19
1.88
37842482--37842519
15
2.5
15
91
4
58
68
0
31
0
0.90
37844068--37844092
12
2.1
12
100
0
50
16
24
20
40
1.91
37844396--37844476
36
2.2
36
82
0
90
35
9
14
39
1.80
37844397--37844480
18
4.7
18
77
1
71
35
10
15
38
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37846456--37846517
29
2.1
29
82
11
74
30
16
6
46
1.72
37852148--37852216
32
2.2
32
91
0
120
30
15
13
40
1.86
37856393--37856432
21
1.9
21
94
0
71
22
7
17
52
1.69
37863638--37863810
46
3.7
45
80
7
186
29
20
28
21
1.98
37865302--37865332
16
1.9
16
93
0
53
35
22
0
41
1.54
37865299--37865338
20
2.0
20
85
0
53
37
22
0
40
1.54
37865449--37865476
5
5.6
5
100
0
56
17
39
0
42
1.50
37865594--37865789
55
3.6
53
77
10
175
22
25
17
34
1.96
37876161--37876204
22
2.0
22
100
0
88
31
13
9
45
1.75
37880835--37881053
46
4.7
45
76
15
200
26
20
31
21
1.98
37883400--37883487
40
2.2
40
83
0
113
34
22
18
25
1.96
37890863--37891003
40
3.5
41
73
8
110
31
26
16
25
1.96
37890909--37891003
40
2.4
40
78
3
111
33
24
17
24
1.96
37891627--37891659
17
2.0
17
88
5
50
66
12
6
15
1.42
37892538--37892579
20
2.1
20
100
0
84
33
23
30
11
1.91
37900045--37900196
67
2.3
67
82
9
184
32
16
29
21
1.95
37908798--37908927
49
2.7
49
82
8
149
28
22
26
22
1.99
37918456--37918526
20
3.5
20
98
0
133
18
36
32
12
1.88
37921361--37921536
40
4.4
40
89
3
259
23
20
29
26
1.99
37921361--37921537
79
2.2
79
89
4
268
24
20
29
25
1.99
37921763--37921806
22
2.0
22
82
8
54
31
11
13
43
1.80
37929544--37929680
40
3.5
40
88
3
206
22
22
29
24
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37929906--37929949
22
2.0
22
82
8
54
31
11
13
43
1.80
37932292--37932352
30
2.1
29
84
6
79
26
8
26
39
1.84
37937971--37938064
46
2.0
46
95
0
170
29
24
11
34
1.91
37944236--37944391
82
1.9
81
85
3
215
26
16
28
28
1.97
37944235--37944388
55
2.9
52
82
7
175
27
16
27
27
1.97
37944236--37944391
27
5.7
27
81
6
163
26
16
28
28
1.97
37944228--37944412
27
6.8
27
75
9
101
26
16
28
29
1.97
37944228--37944412
82
2.3
81
78
2
210
26
16
28
29
1.97
37951717--37951769
27
2.0
27
84
0
70
37
7
15
39
1.75
37952586--37952643
30
1.9
30
85
0
80
41
6
20
31
1.79
37955588--37955832
49
4.9
49
83
2
301
26
19
26
27
1.99
37955587--37955865
150
1.9
150
87
3
409
26
18
26
27
1.99
37959329--37959439
27
4.1
27
84
4
134
28
14
15
41
1.86
37959329--37959439
54
2.1
54
85
0
150
28
14
15
41
1.86
37959399--37959480
41
2.0
41
90
0
128
28
18
17
36
1.93
37959449--37959523
27
2.8
27
89
0
123
25
20
17
37
1.94
37959345--37959519
95
1.8
95
82
2
226
26
16
16
40
1.89
37963612--37963641
15
2.0
15
93
0
51
56
20
3
20
1.56
37963909--37963986
34
2.3
33
80
2
93
34
21
19
24
1.96
37971120--37971190
34
2.1
33
84
2
88
32
23
21
22
1.98
37971660--37971700
18
2.3
18
87
8
57
24
36
26
12
1.91
37974820--37974948
46
2.9
44
85
7
156
24
28
23
24
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37974946--37975063
38
3.1
38
93
0
200
32
22
22
22
1.98
37982478--37982957
81
6.0
81
84
3
587
28
22
7
41
1.81
37982474--37982962
27
18.3
27
82
5
526
28
22
7
41
1.82
37982967--37983161
27
7.2
27
78
6
198
36
17
19
26
1.94
37982974--37983162
54
3.5
54
86
1
245
35
17
20
25
1.95
37982975--37983160
81
2.3
81
86
1
248
36
17
19
26
1.94
37983361--37983415
27
2.1
26
89
3
83
20
23
21
34
1.97
37983374--37983443
27
2.6
26
84
6
86
22
22
18
35
1.95
37983531--37983589
22
2.7
22
81
0
64
20
25
22
32
1.98
37983754--37983827
27
2.8
27
85
6
89
17
24
21
36
1.95
37983968--37984128
6
26.8
6
76
16
156
19
17
14
48
1.81
37984000--37984069
23
2.9
23
85
6
86
17
18
17
47
1.83
37983943--37984128
84
2.2
85
95
1
338
19
18
13
47
1.82
37983943--37984128
30
6.4
30
82
10
233
19
18
13
47
1.82
37985247--37985503
117
2.2
116
79
8
292
37
15
8
38
1.77
37986872--37986896
13
1.9
13
100
0
50
44
24
0
32
1.54
37987584--37987630
17
2.8
17
93
0
76
36
31
6
25
1.81
37992906--37992955
6
7.7
6
83
16
64
80
4
0
16
0.87
37992909--37992953
22
2.1
22
91
4
74
77
4
0
17
0.92
37993526--37993648
63
2.0
63
91
0
201
30
30
15
23
1.95
37994868--37994993
46
2.9
44
82
9
159
23
30
22
23
1.99
37995805--37995902
47
2.1
47
98
0
187
43
12
13
30
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37997480--37997506
13
2.1
13
100
0
54
37
7
22
33
1.82
38000632--38000665
18
1.9
18
88
5
52
11
20
47
20
1.81
38011403--38011601
27
7.4
27
87
2
258
34
19
21
24
1.96
38011403--38011601
53
3.7
53
87
2
247
34
19
21
24
1.96
38011403--38011601
80
2.5
80
87
2
274
34
19
21
24
1.96
38011953--38012018
33
2.0
33
84
0
87
30
24
21
24
1.99
38018518--38018637
54
2.2
54
86
0
159
22
14
20
42
1.88
38018518--38018607
27
3.3
27
90
0
144
22
14
21
42
1.88
38018518--38018637
27
4.4
28
82
7
140
22
14
20
42
1.88
38021371--38021448
34
2.4
32
84
4
93
30
28
23
17
1.97
38021908--38021945
18
2.1
18
85
9
51
23
39
23
13
1.90
38026655--38026688
18
1.9
18
94
5
61
20
41
23
14
1.89
38026655--38026695
18
2.3
18
87
8
57
24
41
21
12
1.87
38035333--38035389
28
2.1
27
87
9
80
75
7
1
15
1.10
38038678--38038745
33
2.1
33
85
0
91
29
26
17
26
1.98
38048971--38049011
12
3.6
11
87
12
57
87
2
7
2
0.70
38050102--38050139
13
2.8
13
82
17
51
73
0
18
7
1.06
38050102--38050163
27
2.3
27
86
5
81
70
1
17
9
1.22
38050020--38050139
12
10.0
12
69
19
63
70
3
17
8
1.25
38050034--38050147
6
18.5
6
70
10
70
72
4
16
6
1.21
38060223--38060586
48
7.6
48
91
0
539
28
29
16
25
1.97
38061841--38062156
48
6.6
48
89
0
418
28
31
15
24
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38061801--38062156
96
3.8
96
88
2
492
27
31
16
24
1.96
38066559--38066658
23
4.2
23
78
16
98
38
20
19
23
1.94
38077753--38077785
12
2.8
12
95
0
57
81
6
3
9
0.95
38078850--38078919
12
5.7
12
76
6
50
71
1
17
10
1.20
38078860--38078979
6
19.2
6
68
8
69
70
1
19
8
1.21
38078860--38078997
42
3.4
39
75
13
111
70
2
18
8
1.24
38078873--38078979
6
17.7
6
70
8
74
71
1
18
7
1.18
38078860--38078934
18
4.1
18
80
3
87
72
2
17
8
1.21
38078940--38078977
13
2.8
13
82
17
51
73
0
18
7
1.06
38078843--38078977
18
7.6
18
71
17
63
69
1
20
8
1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362