Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  323  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108055328--108055357
12
2.5
12
94
0
51
53
3
0
43
1.17
108077052--108077236
40
4.6
39
83
11
175
26
22
26
24
2.00
108079195--108079228
12
2.8
12
86
0
50
67
5
8
17
1.37
108079345--108079591
69
3.5
69
85
7
318
31
21
16
30
1.95
108079345--108079609
73
3.7
70
82
6
311
33
20
15
30
1.94
108079462--108079747
152
1.9
151
87
7
429
34
22
16
27
1.95
108079641--108079982
125
2.8
119
84
11
408
34
23
16
26
1.95
108079644--108080150
125
4.0
118
76
15
389
33
21
16
28
1.95
108079882--108080500
71
8.5
73
76
14
536
32
20
17
30
1.95
108080136--108080165
14
2.1
15
93
6
53
63
6
13
16
1.50
108079892--108080447
298
1.9
294
92
4
931
33
20
16
29
1.95
108080186--108080514
143
2.3
140
88
6
475
33
20
16
30
1.94
108080553--108080684
69
1.9
68
87
4
194
33
21
15
28
1.95
108088912--108088947
12
3.0
12
95
0
63
41
5
25
27
1.77
108090503--108090536
8
4.5
8
96
3
54
64
5
0
29
1.17
108090492--108090547
24
2.3
24
77
17
62
66
3
1
28
1.19
108090496--108090543
16
3.1
15
84
6
60
64
4
2
29
1.23
108090657--108090713
19
2.8
20
73
7
62
56
5
7
31
1.49
108090768--108090834
14
4.9
14
69
18
52
61
1
2
34
1.20
108090745--108090822
31
2.5
31
81
6
79
58
3
5
32
1.38
108090686--108090908
25
9.0
25
70
15
108
56
4
5
34
1.41
108090742--108090856
52
2.2
52
83
10
135
58
3
5
33
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108090837--108090908
22
3.2
22
74
16
60
58
2
2
36
1.27
108091386--108091529
30
4.8
30
87
3
105
22
4
47
26
1.69
108091380--108091554
60
2.9
60
88
3
228
21
4
47
26
1.68
108091427--108091554
30
4.3
30
94
0
220
20
3
48
27
1.67
108096927--108096980
20
2.8
20
83
10
78
50
46
0
3
1.19
108097929--108097981
23
2.3
22
81
15
63
33
3
9
52
1.52
108097953--108098024
28
2.6
28
77
14
78
29
1
6
62
1.30
108102436--108102470
18
1.9
18
88
11
54
8
8
28
54
1.60
108110196--108110389
98
2.0
98
95
0
352
25
25
16
32
1.96
108110691--108110727
17
2.2
17
90
0
56
51
21
2
24
1.61
108112758--108112800
6
7.0
6
86
2
59
34
16
16
32
1.91
108112748--108112795
12
4.0
12
81
7
53
33
14
16
35
1.89
108112748--108112795
24
2.0
24
91
0
78
33
14
16
35
1.89
108115634--108115672
19
2.2
17
86
9
51
56
0
0
43
0.99
108119807--108119859
3
17.7
3
76
0
52
58
1
5
33
1.32
108119808--108119848
21
2.0
21
95
0
73
56
0
4
39
1.21
108119810--108119858
21
2.3
21
86
6
64
57
2
6
34
1.35
108119968--108120028
15
4.1
15
76
16
56
75
1
3
19
1.03
108121239--108122078
88
9.3
87
70
13
355
30
20
16
32
1.95
108121236--108122078
44
18.6
44
70
11
258
29
20
16
32
1.95
108121619--108121988
133
2.8
132
84
3
478
29
20
18
32
1.96
108123726--108123761
18
2.0
18
100
0
72
38
16
22
22
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108124126--108124163
19
2.0
19
85
10
51
13
23
44
18
1.85
108124843--108124914
33
2.1
34
82
2
83
29
25
20
25
1.99
108130136--108130200
23
2.8
23
79
9
62
43
15
6
35
1.72
108137884--108137927
23
1.9
23
81
9
54
40
11
9
38
1.73
108150330--108150513
40
4.6
40
82
6
196
23
20
27
28
1.99
108150330--108150510
80
2.3
81
83
9
221
23
20
27
27
1.99
108150411--108150560
40
3.8
38
80
10
131
25
22
28
24
1.99
108158166--108158349
40
4.6
40
82
6
196
23
20
27
28
1.99
108158166--108158346
80
2.3
81
83
9
221
23
20
27
27
1.99
108158247--108158396
40
3.8
38
80
10
131
25
22
28
24
1.99
108161748--108161804
16
3.6
16
87
0
87
38
7
28
26
1.82
108161786--108161879
44
2.1
46
84
7
122
34
5
24
36
1.78
108167630--108167655
3
8.7
3
100
0
52
30
0
0
69
0.89
108171839--108171898
18
3.4
17
77
11
59
23
15
3
58
1.52
108175752--108175838
23
3.9
22
85
5
97
39
24
19
17
1.92
108175752--108175838
46
2.0
43
84
6
111
39
24
19
17
1.92
108176790--108176897
26
4.2
26
93
0
189
32
7
24
36
1.83
108185270--108185327
19
3.1
19
76
13
57
46
5
5
43
1.48
108194645--108194698
15
3.3
15
74
18
54
46
0
1
51
1.11
108194721--108194753
16
2.0
17
88
5
50
51
0
0
48
1.00
108194756--108194796
20
2.0
20
90
0
64
56
2
0
41
1.13
108205505--108205549
23
2.0
23
82
8
56
37
8
13
40
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108206332--108206378
24
2.0
24
86
0
67
57
27
6
8
1.53
108207928--108207966
21
1.9
20
84
5
51
30
0
35
33
1.58
108213471--108213497
12
2.2
12
100
0
54
25
7
0
66
1.17
108213484--108213518
18
1.9
18
94
0
61
22
2
2
71
1.13
108213618--108213675
3
19.0
3
75
3
53
34
5
1
58
1.30
108213634--108213674
21
2.0
21
95
0
73
39
4
0
56
1.21
108233460--108233641
40
4.7
38
81
11
176
24
26
22
26
2.00
108244667--108244764
41
2.4
41
100
0
196
28
21
21
28
1.99
108245343--108245382
21
2.0
20
85
5
53
42
25
0
32
1.55
108246039--108246125
44
2.0
44
100
0
174
42
11
25
20
1.86
108247322--108247404
22
3.7
22
76
10
78
28
22
18
30
1.97
108247549--108247648
50
2.0
50
92
0
164
33
11
19
37
1.86
108250022--108250046
12
2.1
12
100
0
50
68
16
8
8
1.38
108253042--108253148
24
4.7
23
73
16
89
28
20
16
34
1.95
108258849--108259036
40
4.7
40
92
3
317
24
27
22
25
2.00
108261128--108261289
46
3.5
47
76
14
174
31
29
19
20
1.97
108261126--108261299
93
1.9
93
90
2
278
30
29
19
20
1.97
108267062--108267183
46
2.7
46
90
0
190
30
29
21
18
1.97
108269961--108270049
35
2.5
35
87
0
124
26
12
14
46
1.80
108280655--108280704
17
2.7
20
78
18
70
10
0
44
46
1.37
108285294--108285343
17
2.7
20
78
18
70
10
0
44
46
1.37
108289434--108289491
30
1.9
30
92
0
98
15
27
34
22
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108291256--108291290
18
1.9
18
88
11
54
60
11
0
28
1.32
108291317--108291385
28
2.5
28
75
13
70
78
1
8
11
1.03
108291317--108291371
22
2.5
22
82
5
67
78
1
10
9
1.05
108291347--108291490
20
7.0
20
65
17
53
68
2
4
25
1.19
108291371--108291408
18
2.1
19
85
5
51
71
0
2
26
1.00
108291447--108291493
22
2.1
22
88
7
69
72
2
0
25
0.96
108298741--108298848
26
4.2
26
93
0
189
32
7
24
36
1.83
108300337--108300389
26
2.0
26
82
7
63
39
20
15
24
1.91
108306947--108307118
93
1.8
93
92
0
290
28
29
20
21
1.98
108306948--108307115
46
3.6
46
78
10
180
29
28
20
21
1.98
108315434--108315546
57
2.0
57
89
3
174
23
21
38
16
1.93
108317764--108317804
21
2.0
21
81
18
50
21
26
19
31
1.97
108328314--108328364
22
2.4
21
84
9
68
27
23
3
45
1.70
108328520--108328619
41
2.5
41
84
6
136
30
21
18
31
1.96
108328520--108328616
37
2.5
37
85
6
122
29
21
17
30
1.96
108329493--108329526
4
8.0
4
87
12
50
0
26
0
73
0.83
108329493--108329530
9
4.3
9
90
3
60
0
26
0
73
0.83
108329491--108329526
13
2.8
13
91
0
63
0
27
0
72
0.85
108330261--108330309
15
3.3
15
88
0
71
51
2
18
28
1.58
108340415--108340500
33
2.6
32
75
17
77
54
2
1
41
1.20
108340688--108340740
16
3.1
17
79
15
56
30
5
1
62
1.29
108341764--108341796
3
11.0
3
100
0
66
0
33
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108341930--108341973
3
14.7
3
100
0
88
34
0
0
65
0.93
108343453--108343538
45
1.9
45
92
0
145
25
16
30
27
1.97
108345419--108345545
51
2.5
52
80
7
152
44
7
14
33
1.74
108359438--108359475
20
1.9
20
89
10
60
57
13
7
21
1.60
108367922--108367969
13
3.3
14
82
14
53
70
4
0
25
1.04
108367920--108367964
13
3.5
13
82
11
58
71
4
0
24
1.05
108368051--108368097
5
9.4
5
77
9
51
63
0
2
34
1.06
108368051--108368110
30
2.0
30
93
0
102
60
0
5
35
1.19
108368409--108368495
44
2.0
41
86
6
120
56
6
4
32
1.46
108369920--108369962
19
2.1
19
83
12
50
18
0
13
67
1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362