Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  318  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106079019--106079117
27
3.6
27
70
20
96
13
14
21
51
1.75
106081184--106081241
26
2.2
26
96
0
107
34
12
10
43
1.76
106081578--106081617
20
2.0
20
90
0
62
50
10
10
30
1.69
106081566--106081631
34
1.9
34
87
6
98
46
12
7
33
1.69
106087078--106087214
40
3.6
39
67
15
97
24
20
20
35
1.96
106087135--106087248
35
3.1
35
71
20
115
26
21
21
31
1.98
106087045--106087301
75
3.4
75
83
2
304
24
20
22
32
1.98
106091860--106091914
23
2.5
22
86
11
78
21
3
27
47
1.68
106096887--106096925
18
2.2
18
86
13
55
69
2
2
25
1.14
106098334--106098367
16
2.1
17
88
5
52
47
20
0
32
1.51
106098515--106098558
21
2.1
21
86
0
61
38
20
0
40
1.53
106098515--106098558
5
8.4
5
82
7
52
38
20
0
40
1.53
106098526--106098558
16
2.1
16
88
11
50
36
24
0
39
1.56
106101167--106101217
16
3.5
15
77
20
54
70
0
25
3
1.04
106101166--106101217
22
2.4
21
78
9
59
71
0
25
3
1.03
106103155--106103186
15
2.0
17
88
11
50
62
6
0
31
1.20
106103697--106103740
18
2.4
18
80
0
52
61
0
38
0
0.96
106103768--106103816
17
2.8
18
78
3
55
8
53
30
8
1.60
106105097--106105351
126
2.0
131
86
6
358
34
17
16
31
1.92
106105228--106105718
76
6.3
76
70
15
326
30
18
16
34
1.93
106105528--106105723
74
2.6
74
87
1
286
29
18
17
34
1.94
106105579--106105885
163
1.9
163
87
1
454
32
18
15
32
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106105742--106105885
74
1.9
75
90
1
227
31
19
15
32
1.94
106105285--106105892
237
2.5
240
92
4
994
32
18
15
33
1.92
106111670--106111716
23
2.0
23
100
0
94
25
25
8
40
1.84
106117943--106117968
1
26.0
1
100
0
52
0
0
0
100
0.00
106122270--106122631
127
2.8
127
93
0
598
39
23
12
24
1.89
106124756--106124849
45
2.1
45
82
7
111
26
25
19
28
1.98
106124727--106125492
177
4.3
177
89
0
1102
29
22
18
29
1.97
106126584--106126609
13
2.0
13
100
0
52
0
23
0
76
0.78
106136605--106136967
127
2.8
127
91
2
575
39
23
12
24
1.89
106137584--106137655
27
2.5
30
80
13
89
58
4
4
33
1.36
106140188--106140235
23
2.1
23
96
0
87
39
4
22
33
1.74
106143003--106143047
23
2.0
23
82
8
56
37
8
13
40
1.76
106143781--106143862
26
3.2
26
85
0
110
41
10
17
30
1.83
106143794--106143880
26
3.3
26
83
3
77
41
9
19
29
1.82
106143781--106143880
52
1.9
52
82
8
123
42
10
17
31
1.82
106149477--106149765
48
6.0
48
70
13
150
20
23
18
37
1.94
106149519--106149696
97
1.8
97
82
8
227
21
20
17
39
1.93
106151589--106151616
6
4.7
6
100
0
56
17
35
17
28
1.93
106155027--106155106
29
2.6
30
77
16
83
55
11
0
33
1.36
106159440--106159559
43
2.8
43
77
6
134
27
20
18
34
1.95
106166623--106166670
15
3.3
15
76
5
62
29
0
27
43
1.55
106166617--106166676
29
2.1
29
93
0
102
28
0
30
41
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106168410--106168458
18
2.8
17
81
12
55
63
0
0
36
0.95
106168559--106168628
27
2.6
27
79
2
77
32
4
7
55
1.46
106171324--106171367
22
2.0
22
82
8
54
54
15
6
22
1.65
106178920--106178959
22
1.9
21
85
10
55
27
12
2
57
1.48
106187901--106187935
8
4.5
8
89
3
54
80
0
0
20
0.72
106187903--106187941
16
2.4
16
95
0
69
79
0
0
20
0.73
106187901--106187949
11
4.5
11
78
19
50
75
2
0
22
0.90
106187986--106188053
12
6.1
11
79
15
52
77
1
5
14
1.02
106188017--106188050
6
5.7
6
85
0
50
79
0
0
20
0.73
106188008--106188086
29
2.8
27
77
11
95
75
0
2
21
0.91
106188029--106188089
24
2.7
23
76
16
65
75
0
1
22
0.89
106188018--106188089
8
10.3
7
72
20
53
75
0
1
23
0.89
106188008--106188089
16
5.6
16
72
24
81
75
0
2
21
0.92
106188018--106188177
22
7.4
20
70
18
74
68
1
2
26
1.12
106188457--106188514
30
1.9
30
85
0
80
13
36
31
18
1.90
106192530--106192611
30
2.7
30
92
0
137
13
28
35
23
1.92
106192549--106192602
17
3.4
17
65
19
53
16
22
37
24
1.94
106196081--106196111
3
10.3
3
92
0
53
64
0
3
32
1.09
106196215--106196247
3
11.0
3
100
0
66
66
0
0
33
0.92
106198043--106198517
168
2.9
165
80
11
500
35
18
17
28
1.94
106198156--106198440
85
3.4
84
74
10
278
35
20
16
27
1.94
106198795--106198829
14
2.5
14
95
0
61
60
5
17
17
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106198580--106198972
89
4.5
87
80
6
427
35
18
17
28
1.94
106198580--106198968
177
2.2
178
82
5
461
34
18
17
29
1.94
106209979--106210008
3
10.0
3
92
0
51
63
0
3
33
1.11
106209972--106210008
12
3.1
12
92
0
56
59
0
5
35
1.20
106210078--106210115
3
13.0
3
94
5
69
65
0
0
34
0.93
106214320--106214392
30
2.4
29
80
14
87
60
1
1
36
1.14
106216806--106217139
82
4.1
82
99
0
650
29
19
28
22
1.98
106216806--106217139
41
8.1
41
90
0
533
29
19
28
22
1.98
106224132--106224389
41
6.3
41
90
0
408
29
20
28
22
1.98
106224132--106224383
82
3.1
82
99
0
495
28
19
28
22
1.98
106225622--106225725
35
3.0
35
94
0
172
29
15
21
33
1.94
106225628--106225763
35
3.9
35
80
7
134
30
12
21
35
1.90
106226235--106226359
55
2.3
55
98
0
241
39
2
21
36
1.67
106233807--106233834
6
4.7
6
100
0
56
17
17
14
50
1.79
106239391--106239455
31
2.1
31
100
0
130
52
9
13
24
1.70
106240323--106240372
16
3.1
17
77
8
59
62
0
4
34
1.14
106240396--106240429
10
3.3
10
91
4
50
82
0
14
2
0.79
106244901--106244949
5
9.8
5
100
0
98
59
0
0
40
0.98
106245260--106245305
21
2.2
21
84
0
56
45
10
6
36
1.65
106249612--106249665
18
2.7
21
75
16
69
38
9
7
44
1.65
106260541--106260581
20
2.1
19
86
4
55
43
2
9
43
1.50
106260956--106260989
17
2.0
17
94
0
59
32
17
20
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106262175--106262216
16
2.7
15
82
13
50
42
0
0
57
0.99
106262350--106262391
22
2.0
21
85
4
57
59
2
4
33
1.31
106264758--106264800
13
3.2
13
80
9
50
34
4
0
60
1.17
106264923--106264953
15
2.1
15
93
0
53
48
0
3
48
1.17
106265913--106265940
2
14.0
2
100
0
56
50
0
0
50
1.00
106269693--106269729
17
2.1
18
90
5
58
64
0
10
24
1.25
106270183--106270254
30
2.4
31
77
20
80
47
11
1
40
1.48
106270975--106271001
14
1.9
14
100
0
54
70
0
7
22
1.12
106273379--106273474
47
2.0
47
97
0
183
35
2
7
55
1.40
106273632--106273689
22
2.6
23
81
8
75
48
0
5
46
1.24
106273618--106273690
21
3.5
21
69
17
53
43
1
4
50
1.29
106275127--106275226
18
5.6
18
70
0
56
38
13
15
34
1.85
106275161--106275238
36
2.2
36
80
0
93
35
12
16
34
1.87
106283764--106283795
16
1.9
17
93
6
57
56
0
0
43
0.99
106285582--106285621
20
2.0
20
90
0
62
22
42
25
10
1.84
106287162--106287191
12
2.6
12
94
5
53
30
16
26
26
1.97
106288168--106288221
16
3.4
16
68
0
54
31
18
3
46
1.67
106290545--106290569
2
12.5
2
100
0
50
48
0
0
52
1.00
106291653--106291924
46
5.7
48
75
13
185
26
18
28
25
1.98
106293546--106293590
22
2.0
22
100
0
90
37
4
26
31
1.76
106298938--106299026
46
1.9
46
95
0
160
40
15
19
24
1.90
106306344--106306513
46
3.6
46
88
3
232
22
22
14
40
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106308266--106308302
19
1.9
19
88
0
56
0
21
0
78
0.75
106308343--106308383
10
4.2
10
76
17
50
2
17
0
80
0.82
106308342--106308383
18
2.3
18
88
12
59
2
19
0
78
0.86
106309881--106309912
16
2.0
16
100
0
64
18
18
6
56
1.62
106315123--106315170
24
2.0
24
83
0
60
54
10
0
35
1.35
106333144--106333367
122
1.9
120
87
1
331
40
9
20
29
1.83
106349893--106350077
40
4.7
40
82
10
211
24
22
28
25
1.99
106349893--106350077
79
2.3
81
84
9
238
24
22
28
25
1.99
106349946--106350100
79
2.0
79
84
7
208
25
21
27
25
1.99
106352328--106352437
40
2.8
40
84
0
121
31
12
18
37
1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362