Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  347  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
115253622--115253649
3
9.3
3
100
0
56
0
32
0
67
0.91
115256962--115256994
16
2.0
17
88
5
50
54
0
0
45
0.99
115257578--115257606
3
9.7
3
100
0
58
65
0
0
34
0.93
115257915--115257960
23
2.0
23
84
12
60
43
2
4
50
1.34
115259035--115259092
26
2.2
27
93
3
100
50
6
29
13
1.68
115275799--115275851
23
2.4
22
76
20
56
9
18
1
69
1.25
115282376--115282445
36
1.9
36
100
0
140
42
32
4
20
1.71
115286379--115286414
17
2.0
19
89
10
58
44
8
30
16
1.77
115288122--115288147
11
2.4
11
100
0
52
76
0
7
15
0.99
115289464--115289529
32
2.0
33
91
2
107
31
21
1
45
1.61
115289845--115289869
12
2.1
12
100
0
50
36
32
8
24
1.84
115290866--115290914
24
2.0
24
92
0
80
36
14
28
20
1.92
115293543--115293715
84
2.0
86
87
3
251
33
22
20
23
1.97
115301714--115301772
31
1.9
31
89
0
91
37
10
8
44
1.69
115306379--115306421
18
2.5
16
85
14
59
23
2
4
69
1.18
115316203--115316328
63
2.0
63
96
0
234
40
11
10
37
1.76
115316696--115316726
2
15.5
2
100
0
62
51
0
0
48
1.00
115318276--115318377
51
2.0
51
98
0
195
38
11
28
21
1.89
115320209--115321021
150
5.3
149
75
10
509
30
18
17
33
1.94
115329017--115329053
18
2.1
18
94
0
65
35
5
13
45
1.66
115330263--115330288
11
2.4
11
100
0
52
19
0
11
69
1.18
115331861--115332158
149
2.0
149
100
0
596
36
14
10
37
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
115334152--115334204
28
1.9
28
84
3
72
54
0
5
39
1.24
115341454--115341507
26
2.1
26
86
13
76
25
0
3
70
1.04
115348593--115348633
21
2.0
21
90
9
66
39
2
24
34
1.69
115349914--115350072
39
4.1
39
91
0
246
27
19
29
23
1.98
115352252--115352420
46
3.7
45
75
13
173
23
20
26
29
1.99
115352245--115352415
93
1.8
93
91
0
279
23
21
26
28
1.99
115353910--115354192
18
15.3
18
70
11
133
36
15
12
35
1.85
115353897--115354192
36
8.0
36
69
11
161
36
15
12
35
1.85
115354356--115354380
6
4.2
6
100
0
50
52
16
16
16
1.76
115354360--115354554
45
4.3
45
91
0
273
42
19
18
20
1.90
115354963--115355009
5
9.2
5
90
4
67
38
23
0
38
1.55
115362046--115362078
7
4.9
7
96
3
59
24
0
0
75
0.80
115362041--115362078
14
2.9
13
88
11
60
23
0
0
76
0.79
115369117--115369263
44
3.4
44
80
12
146
32
7
12
46
1.70
115372503--115372536
17
2.0
17
100
0
68
29
11
23
35
1.90
115375039--115375086
16
2.8
16
78
9
51
54
4
4
37
1.39
115375744--115375880
72
1.9
72
87
3
204
40
13
7
38
1.73
115378070--115378104
18
1.9
18
88
0
52
37
0
2
60
1.12
115380789--115380837
17
2.7
18
78
15
57
26
10
14
48
1.75
115386258--115386286
15
1.9
15
100
0
58
20
6
10
62
1.50
115391343--115391386
19
2.3
19
84
11
54
47
15
4
31
1.66
115392532--115392589
29
2.0
29
100
0
116
37
10
17
34
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
115396317--115396378
32
1.9
33
83
9
83
53
0
1
45
1.10
115397912--115397967
21
2.8
21
74
15
55
57
5
3
33
1.39
115401451--115401476
7
3.7
7
100
0
52
15
0
0
84
0.62
115403294--115403323
15
2.0
15
100
0
60
53
20
6
20
1.67
115407368--115407421
26
2.1
26
100
0
108
38
14
3
42
1.64
115411389--115411559
93
1.8
93
96
0
315
28
28
21
21
1.99
115411381--115411556
46
3.8
46
81
12
225
28
28
21
21
1.98
115424788--115424835
19
2.5
18
77
12
51
54
0
2
43
1.12
115424918--115424963
24
1.9
24
86
0
65
45
4
0
50
1.21
115439846--115439896
11
4.6
11
76
9
59
35
0
0
64
0.94
115439846--115439902
22
2.5
22
75
10
62
35
0
0
64
0.93
115439935--115439971
19
2.0
19
89
5
58
64
10
0
24
1.25
115440161--115440209
26
2.0
23
85
14
64
40
6
4
48
1.47
115441667--115441721
15
3.7
15
100
0
110
43
49
0
7
1.30
115441667--115441721
7
7.4
7
76
11
56
43
49
0
7
1.30
115441673--115441715
8
5.6
8
78
10
54
46
48
0
4
1.22
115441667--115441744
30
2.6
30
87
4
86
43
46
1
8
1.43
115442983--115443018
18
2.1
18
90
10
58
36
5
5
52
1.48
115455227--115455341
46
2.5
46
83
5
137
33
21
19
26
1.97
115455353--115455667
44
7.4
41
70
10
139
29
21
21
27
1.99
115455440--115455641
44
4.7
42
74
6
163
31
19
22
27
1.98
115455270--115455664
129
3.1
127
87
4
505
30
21
21
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
115455440--115455641
85
2.3
87
81
4
212
31
19
22
27
1.98
115455847--115455886
15
2.7
15
100
0
80
42
50
0
7
1.30
115457077--115457112
18
2.1
18
90
10
58
36
5
5
52
1.48
115459137--115459287
38
3.9
38
90
3
221
31
18
3
47
1.65
115459305--115459348
22
2.0
22
86
0
61
45
6
2
45
1.42
115474557--115474581
6
4.2
6
100
0
50
52
0
0
48
1.00
115479562--115479604
7
5.6
7
80
20
50
79
2
0
18
0.85
115479561--115479604
16
2.8
15
81
18
54
77
4
0
18
0.94
115479562--115479610
16
3.1
15
80
11
53
77
2
2
18
0.96
115479563--115479612
25
2.0
25
88
7
75
74
2
2
22
1.03
115479640--115479684
23
2.0
23
86
4
65
46
0
0
53
1.00
115479710--115479770
29
2.1
29
82
11
72
70
0
1
27
0.97
115480239--115480291
21
2.5
22
78
12
65
41
1
1
54
1.22
115480268--115480323
16
3.5
15
78
11
51
39
1
3
55
1.28
115484815--115484875
30
2.0
30
90
0
95
39
18
9
32
1.83
115484853--115484896
21
2.1
21
91
0
70
38
25
4
31
1.76
115488498--115488527
2
15.0
2
100
0
60
50
0
0
50
1.00
115510625--115510689
29
2.2
28
86
10
87
46
4
3
46
1.39
115510813--115510839
9
3.0
9
100
0
54
33
11
0
55
1.35
115514558--115514590
17
2.0
17
94
5
59
36
15
0
48
1.45
115514889--115515142
46
5.5
46
88
3
323
18
24
14
41
1.89
115514889--115515145
92
2.8
92
87
0
361
19
24
14
41
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
115514889--115515142
138
1.8
138
87
0
373
18
24
14
41
1.89
115519417--115519524
26
4.2
26
93
0
189
36
24
7
32
1.83
115526620--115526646
14
1.9
14
100
0
54
81
0
0
18
0.69
115528067--115528096
9
3.3
9
95
0
51
3
13
30
53
1.56
115530737--115530818
23
3.6
23
73
17
55
54
6
4
34
1.46
115530829--115530903
31
2.3
32
75
20
77
62
5
2
29
1.31
115530955--115530996
3
13.7
3
80
14
50
66
0
2
30
1.04
115530968--115531010
23
2.0
21
86
9
59
65
2
6
25
1.30
115531197--115531245
22
2.2
23
89
10
84
61
4
4
30
1.33
115531823--115532080
133
1.9
133
89
0
399
27
19
25
26
1.99
115534877--115535235
131
2.7
132
82
2
420
25
18
19
36
1.94
115536484--115536562
19
4.2
19
90
9
126
37
10
16
35
1.82
115536474--115536561
36
2.4
36
80
17
119
38
10
15
35
1.82
115546011--115546640
45
14.7
45
70
15
379
29
18
24
26
1.98
115545935--115546247
127
2.5
126
87
2
430
29
18
25
26
1.98
115546056--115546619
82
6.7
82
76
9
551
29
19
24
26
1.98
115546184--115546703
127
4.1
127
73
13
449
30
18
23
26
1.98
115546017--115546513
172
2.9
172
90
1
798
29
18
24
27
1.98
115548254--115548378
23
5.7
22
70
23
77
32
4
3
60
1.31
115548286--115548329
18
2.2
20
84
11
56
27
4
2
65
1.23
115548305--115548347
18
2.6
16
82
17
52
32
2
0
65
1.06
115548261--115548348
32
2.7
31
77
13
90
30
3
2
63
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
115548306--115548395
16
5.8
16
72
19
57
31
3
3
62
1.28
115548368--115548410
16
2.6
17
82
10
54
27
2
2
67
1.15
115549811--115551012
132
9.1
132
93
0
2001
31
17
23
27
1.97
115551616--115551713
19
5.2
19
90
7
155
37
10
15
36
1.81
115551606--115551713
36
2.9
35
75
20
103
37
10
14
37
1.80
115552070--115552101
14
2.3
14
94
0
55
37
6
0
56
1.25
115553457--115553549
47
2.0
47
82
6
116
30
23
13
32
1.94
115553551--115553637
31
2.8
31
94
0
156
26
28
18
26
1.98
115553613--115553741
50
2.5
51
91
2
206
24
23
17
34
1.96
115558497--115558557
20
3.1
19
77
13
70
36
11
11
40
1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362