Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  220  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74335846--74335870
12
2.1
12
100
0
50
40
36
8
16
1.77
74335917--74336005
38
2.3
38
94
0
151
19
49
11
20
1.78
74336687--74336744
24
2.4
25
81
13
68
29
6
0
63
1.20
74337044--74337085
22
1.9
22
85
0
57
21
7
2
69
1.25
74338556--74338622
23
3.0
22
88
4
89
49
35
0
14
1.44
74339735--74340062
118
2.8
115
80
13
375
28
6
7
57
1.52
74340082--74340114
3
11.0
3
93
0
57
36
0
0
63
0.95
74340223--74340365
3
47.0
3
70
18
50
30
4
3
61
1.32
74340286--74340351
29
2.2
29
79
12
73
25
3
0
71
1.01
74340303--74340365
9
6.9
9
78
10
56
26
3
0
69
1.03
74340840--74340888
3
16.3
3
95
0
89
32
2
0
65
1.04
74352531--74352777
40
6.2
40
89
1
327
29
28
19
22
1.98
74355038--74355244
88
2.4
88
92
0
342
37
22
21
18
1.95
74355180--74355552
88
4.2
87
84
3
437
35
21
24
19
1.96
74355092--74355375
132
2.2
132
92
0
469
35
21
23
18
1.95
74355092--74355552
44
10.5
43
70
13
280
36
21
23
19
1.95
74355224--74355558
88
3.8
88
90
0
526
35
20
24
19
1.96
74355616--74355741
45
2.8
45
90
4
193
29
19
26
25
1.98
74357371--74357422
3
17.3
3
87
0
68
34
1
1
61
1.18
74357695--74357822
12
10.9
12
74
12
88
28
11
1
58
1.42
74357739--74357793
18
2.9
18
74
15
58
25
16
0
58
1.38
74357731--74357787
9
6.3
9
74
8
53
28
12
1
57
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74357730--74357821
36
2.6
35
81
13
107
26
11
1
60
1.38
74364551--74364594
20
2.3
19
84
4
52
52
4
22
20
1.65
74364559--74364599
19
2.1
20
86
4
57
48
4
24
21
1.69
74366729--74366770
17
2.3
19
80
8
52
57
9
4
28
1.51
74366954--74366991
18
2.2
17
86
9
51
36
2
2
57
1.26
74366982--74367015
17
2.1
16
88
5
50
8
8
2
79
1.03
74367408--74367444
18
2.0
18
89
5
56
37
0
2
59
1.12
74367408--74367445
19
2.0
19
89
0
58
39
0
2
57
1.12
74367414--74367456
19
2.3
19
83
0
50
46
0
0
53
1.00
74367447--74367493
19
2.6
18
90
9
78
44
0
4
51
1.21
74370753--74370817
19
2.9
23
82
13
75
26
0
7
66
1.19
74373720--74373752
16
2.1
16
88
11
50
51
9
0
39
1.34
74376179--74376244
30
2.2
29
79
12
71
48
10
1
39
1.47
74382213--74382269
28
2.1
27
86
3
78
59
15
3
21
1.51
74383163--74383219
23
2.5
23
88
0
78
19
10
8
61
1.54
74387848--74387877
15
2.0
15
93
0
51
70
10
0
20
1.16
74387915--74387953
18
2.2
18
86
9
53
66
0
5
28
1.12
74387956--74388048
29
3.2
28
77
17
75
62
3
3
31
1.27
74394770--74394811
15
2.6
16
85
7
59
73
4
14
7
1.21
74394770--74394812
16
2.7
16
75
13
52
74
4
13
6
1.19
74398280--74398327
16
3.1
15
80
19
62
27
0
2
70
0.98
74403541--74403594
22
2.5
22
87
3
74
12
31
37
18
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74405381--74405418
19
2.1
18
90
5
58
36
39
0
23
1.55
74405381--74405418
9
4.1
9
86
6
58
36
39
0
23
1.55
74406597--74406902
153
2.0
153
99
0
603
39
30
9
21
1.84
74411732--74411841
42
2.6
42
79
2
123
29
24
16
30
1.96
74417175--74417252
36
2.1
37
90
2
122
25
29
19
25
1.98
74417371--74418045
47
14.4
47
95
1
1169
29
29
8
32
1.87
74417371--74418045
190
3.6
188
95
1
1178
29
29
8
32
1.87
74420391--74420421
14
2.2
14
100
0
62
32
6
16
45
1.72
74422505--74422580
37
2.1
36
83
11
93
42
1
2
53
1.23
74423247--74423276
14
2.1
14
93
0
51
16
6
33
43
1.74
74425823--74425858
19
1.9
19
88
5
56
5
19
0
75
1.00
74428200--74428456
46
5.6
46
88
4
351
20
24
13
42
1.88
74436395--74436753
185
1.9
185
94
1
639
20
27
18
34
1.96
74448291--74448381
42
2.1
42
95
2
164
32
14
17
35
1.90
74448632--74448752
46
2.7
43
82
7
125
26
20
28
23
1.99
74454172--74454235
34
1.9
34
83
3
85
37
1
3
57
1.24
74454897--74455013
31
3.9
29
74
6
83
36
9
11
41
1.74
74454897--74454971
29
2.5
30
78
6
82
41
9
10
38
1.72
74455642--74455681
14
2.9
14
85
14
57
75
0
0
25
0.81
74455645--74455683
12
3.1
12
88
7
51
76
0
0
23
0.78
74456264--74456329
12
5.4
12
75
8
53
28
4
3
63
1.29
74456381--74456419
18
2.2
18
85
0
51
33
2
7
56
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74456751--74456797
22
2.2
23
78
17
57
29
8
8
53
1.61
74458477--74458535
31
1.9
31
92
0
100
28
10
15
45
1.78
74463597--74463631
18
1.9
18
88
0
52
62
8
20
8
1.49
74465000--74465055
28
2.0
29
92
3
96
21
12
23
42
1.86
74471485--74471621
68
2.0
69
88
1
204
44
11
9
34
1.73
74474585--74474662
25
3.0
25
71
15
68
23
3
7
65
1.35
74474680--74474801
26
4.6
26
78
10
131
33
4
1
59
1.28
74474680--74474880
25
7.8
25
73
10
145
30
5
3
59
1.38
74474767--74474911
75
1.9
76
83
9
190
29
7
4
57
1.47
74482233--74482279
11
4.3
11
79
15
53
34
6
0
59
1.23
74484138--74484193
28
2.0
28
100
0
112
39
10
14
35
1.81
74490603--74490647
22
2.0
22
83
8
56
35
17
8
37
1.81
74498184--74498228
22
2.0
22
83
8
56
35
17
8
37
1.81
74500023--74500100
20
3.6
20
67
18
57
47
6
10
35
1.63
74500026--74500118
46
2.0
46
100
0
186
40
6
10
41
1.65
74502777--74502898
62
2.0
62
98
0
235
31
13
27
28
1.94
74504870--74504918
15
3.3
15
73
26
50
18
4
0
77
0.92
74507370--74507451
24
3.6
23
83
5
94
34
19
20
25
1.96
74514955--74515044
24
3.7
25
76
10
80
33
22
20
24
1.97
74514975--74515067
23
4.0
23
72
16
59
35
20
20
23
1.96
74514953--74515058
47
2.2
49
80
9
112
32
22
21
23
1.98
74517429--74517624
101
2.0
100
83
3
250
30
13
23
32
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74533905--74533983
33
2.4
32
83
6
95
24
20
18
36
1.95
74534288--74534327
21
2.0
20
90
5
62
20
27
40
12
1.88
74534460--74534824
192
1.9
192
94
0
640
23
30
21
24
1.99
74537244--74537679
214
2.0
213
92
1
730
39
15
8
36
1.77
74540361--74540386
3
8.7
3
100
0
52
69
0
30
0
0.89
74546798--74546931
70
1.9
70
83
3
171
47
14
12
24
1.79
74565596--74565628
16
2.1
16
100
0
66
57
12
0
30
1.35
74566816--74566896
24
3.2
25
77
10
85
41
1
3
53
1.27
74566816--74566896
25
3.2
24
77
11
74
41
1
3
53
1.27
74571505--74571536
12
2.6
13
85
14
50
31
0
18
50
1.48
74571564--74571616
4
13.0
4
77
2
52
26
5
22
45
1.74
74571564--74571602
12
3.2
12
92
3
60
28
5
23
43
1.75
74571471--74571591
59
2.1
59
96
0
224
41
9
12
37
1.75
74574446--74574512
19
3.2
20
76
20
66
56
4
0
38
1.19
74574446--74574498
20
2.7
19
82
14
63
58
5
0
35
1.22
74574771--74574803
5
6.6
5
100
0
66
21
18
0
60
1.36
74583700--74583758
30
1.9
31
86
3
84
49
1
20
28
1.59
74583965--74584003
8
5.1
8
84
9
55
35
0
0
64
0.94
74586586--74586625
21
1.9
21
100
0
80
35
22
32
10
1.87
74588338--74588514
39
4.5
39
87
2
239
30
28
22
19
1.98
74594741--74594907
39
4.3
38
89
2
219
31
28
21
19
1.97
74601512--74601765
39
6.5
39
88
3
350
19
22
29
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74604078--74604185
43
2.5
43
84
3
137
37
21
14
25
1.92
74610277--74610321
23
2.0
23
86
8
65
37
8
17
35
1.81
74612322--74612370
24
1.9
26
88
12
75
40
4
6
48
1.47
74613717--74613797
42
1.9
41
80
14
94
20
25
35
17
1.95
74613919--74613992
31
2.4
31
81
0
94
17
29
32
20
1.95
74614397--74614453
18
3.1
18
77
7
62
38
0
1
59
1.08
74619033--74619156
50
2.5
51
82
5
155
25
28
18
27
1.98
74620784--74620829
19
2.4
18
85
7
56
54
2
21
21
1.56
74624356--74624419
13
4.8
13
77
11
67
35
18
0
45
1.50
74624354--74624426
26
2.8
25
78
15
76
35
17
0
46
1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362