genome.fa.s8.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  138  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45975843--45976013	46	3.7	45	75	16	172	29	28	21	21	1.98
45976436--45976495	30	2.0	30	90	0	93	30	25	8	36	1.85
45979941--45980143	40	5.1	40	92	4	265	21	23	30	24	1.99
45979941--45980143	79	2.5	79	86	8	270	21	23	30	24	1.99
45987991--45988206	39	5.5	40	91	6	302	23	23	28	25	2.00
45987991--45988206	79	2.7	79	88	7	300	23	23	28	25	2.00
45990206--45990251	23	2.0	23	83	8	58	34	6	17	41	1.75
45990854--45990974	39	3.3	39	85	8	148	23	21	28	26	1.99
45998774--45998955	79	2.3	81	82	7	221	24	21	27	25	2.00
45998774--45998957	40	4.6	40	81	9	207	24	21	27	26	1.99
45998829--45998990	79	2.1	79	82	6	195	25	19	27	26	1.99
46004778--46004887	58	1.9	58	88	1	168	26	30	16	26	1.97
46004782--46004887	29	3.7	29	85	6	135	26	29	16	27	1.97
46004946--46004981	19	1.9	19	88	5	56	19	38	16	25	1.92
46005887--46005954	29	2.4	28	78	14	68	39	23	4	32	1.75
46013197--46013259	20	3.0	20	76	13	72	38	6	9	46	1.62
46016682--46016710	14	2.1	14	100	0	58	55	17	0	27	1.42
46026264--46026296	13	2.6	13	90	4	50	39	0	12	48	1.40
46031689--46031741	6	8.7	6	89	2	79	15	3	1	79	0.96
46036144--46036361	40	5.5	40	89	4	293	26	27	22	22	1.99
46043563--46043612	23	2.2	23	100	0	100	44	14	10	32	1.78
46043672--46043814	40	3.5	40	92	4	218	25	29	23	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46045678--46045747	25	2.8	25	95	0	122	25	22	25	25	2.00
46045916--46045966	27	2.0	25	84	7	66	35	17	19	27	1.94
46045954--46046210	27	9.9	27	83	8	286	24	21	19	34	1.97
46046039--46046075	19	1.9	19	94	0	65	21	18	24	35	1.96
46046202--46046406	81	2.6	80	83	6	238	30	8	20	40	1.82
46046200--46046406	27	7.7	27	82	3	195	30	8	20	40	1.83
46046362--46046413	27	1.9	27	88	0	77	30	7	23	38	1.83
46047949--46047981	13	2.6	13	90	4	50	39	0	12	48	1.40
46050071--46050205	56	2.4	56	89	0	198	33	23	14	28	1.94
46051153--46051191	19	1.9	19	85	10	51	51	12	0	35	1.40
46053151--46053584	50	8.6	51	74	6	262	27	17	24	29	1.98
46053095--46053584	101	4.9	101	80	3	373	27	17	24	30	1.97
46053197--46053584	151	2.6	151	89	0	598	27	17	25	29	1.97
46053048--46053527	252	1.9	253	86	3	680	27	16	24	31	1.96
46053785--46053814	16	1.9	15	93	6	51	43	0	23	33	1.54
46059635--46059682	26	2.0	26	88	12	75	12	6	12	68	1.37
46062612--46062663	27	2.0	26	84	3	68	17	26	21	34	1.95
46067256--46067574	47	6.7	48	71	11	174	30	19	27	22	1.98
46077473--46077645	47	3.8	45	77	14	149	28	18	28	24	1.98
46081050--46081085	18	1.9	19	88	5	56	36	16	0	47	1.47
46081320--46081507	56	3.4	56	92	0	306	34	23	14	27	1.94
46084219--46084558	27	12.6	27	81	5	168	39	19	10	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46084240--46084544	54	5.7	54	75	10	284	40	18	9	31	1.83
46084403--46084582	82	2.2	80	83	6	229	40	18	11	30	1.85
46102985--46103030	18	2.5	19	89	7	76	30	23	23	21	1.99
46112352--46112396	20	2.2	20	88	0	63	35	13	2	48	1.54
46115115--46115238	29	4.4	28	85	2	149	29	28	13	28	1.94
46115115--46115238	57	2.2	57	84	5	153	29	28	13	28	1.94
46118135--46118255	39	3.1	39	96	2	217	20	25	30	23	1.98
46124830--46124950	39	3.1	39	97	0	224	20	24	31	23	1.98
46131823--46132048	50	4.5	50	81	9	255	26	17	26	30	1.97
46138436--46138662	40	5.7	40	95	1	393	22	26	20	30	1.98
46143194--46143278	28	3.2	28	67	24	85	27	16	28	28	1.97
46143092--46143333	50	4.8	50	78	12	221	25	18	25	30	1.98
46148994--46149048	24	2.3	24	87	3	76	36	23	0	40	1.55
46155995--46156109	44	2.6	44	84	2	140	36	13	21	27	1.92
46155995--46156127	46	2.9	45	80	4	142	36	14	22	27	1.93
46172693--46172726	17	2.0	17	94	0	59	55	0	5	38	1.24
46174051--46174138	24	3.7	24	80	3	97	21	15	32	29	1.95
46174414--46174491	38	2.1	38	97	0	147	44	5	11	38	1.63
46181785--46181900	24	4.8	25	83	8	136	21	14	33	30	1.93
46181785--46181900	48	2.4	49	81	8	150	21	14	33	30	1.93
46183728--46183852	46	2.7	46	87	0	178	32	27	18	21	1.97
46186247--46186317	15	4.7	15	74	19	67	60	11	15	12	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46186247--46186326	30	2.7	30	81	11	92	58	13	15	12	1.63
46186249--46186326	15	5.2	15	72	20	56	58	14	14	12	1.63
46202193--46202237	22	2.0	22	83	8	56	35	17	8	37	1.81
46206162--46206222	30	2.0	30	83	0	77	31	22	8	37	1.84
46212890--46212923	16	2.1	16	88	5	50	2	11	8	76	1.12
46270466--46270526	30	2.0	30	83	0	77	31	22	8	37	1.84
46277198--46277231	16	2.1	16	88	5	50	2	11	8	76	1.12
46291758--46291817	27	2.3	26	82	2	66	35	18	23	23	1.96
46292560--46292732	27	6.4	27	84	0	211	25	20	19	34	1.96
46292560--46292732	54	3.2	54	86	3	240	25	20	19	34	1.96
46299011--46299053	20	2.3	18	81	14	52	37	20	0	41	1.53
46300419--46300689	48	5.7	48	88	0	355	25	17	28	29	1.98
46300707--46300806	48	2.1	48	85	7	132	27	17	30	26	1.97
46307138--46307264	43	3.0	43	79	8	143	31	27	16	24	1.96
46308318--46308342	13	1.9	13	100	0	50	40	24	4	32	1.73
46312437--46312489	27	1.9	28	85	11	74	30	16	20	32	1.95
46319573--46319681	27	4.0	26	79	14	114	38	24	21	15	1.92
46319573--46319681	54	2.0	54	85	7	150	38	24	21	15	1.92
46322660--46322819	39	4.1	39	97	0	284	21	25	30	22	1.99
46326665--46326820	55	2.9	53	76	7	170	21	24	16	37	1.94
46326645--46326804	53	3.0	54	77	8	182	21	24	16	38	1.93
46326806--46326868	33	1.9	33	96	0	117	20	26	12	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46327713--46327773	30	2.0	30	90	0	95	34	24	4	36	1.77
46334033--46334149	44	2.7	43	74	18	109	33	24	17	24	1.96
46335235--46335259	13	1.9	13	100	0	50	40	24	4	32	1.73
46340445--46340876	48	9.0	48	90	1	625	24	16	31	28	1.97
46351156--46351359	27	7.6	27	85	4	241	27	14	27	29	1.95
46360044--46360154	27	4.1	26	84	10	134	36	20	25	18	1.95
46360044--46360154	54	2.1	54	88	6	163	36	20	25	18	1.95
46360572--46360601	16	1.9	15	93	6	51	6	20	20	53	1.67
46367912--46368016	27	3.9	27	86	12	144	35	22	25	16	1.95
46367905--46368016	54	2.1	54	88	6	165	35	23	25	16	1.94
46373038--46373068	8	3.8	8	91	8	53	12	0	25	61	1.32
46375235--46375468	40	5.9	40	92	0	380	23	28	22	26	1.99
46378239--46378288	24	2.1	24	100	0	100	42	30	8	20	1.80
46380856--46380933	39	2.0	39	100	0	156	38	15	15	30	1.88
46398357--46398513	27	5.7	27	77	7	147	28	27	16	27	1.97
46398336--46398514	55	3.3	54	76	14	179	29	27	16	26	1.97
46398336--46398513	27	6.5	27	78	6	146	29	28	16	26	1.97
46406398--46406582	27	6.8	27	76	7	108	29	27	16	27	1.97
46406398--46406575	54	3.3	55	76	15	181	28	28	16	26	1.97
46406419--46406574	82	1.9	81	85	3	215	28	27	16	27	1.97
46409201--46409313	33	3.3	33	64	20	86	23	3	22	50	1.64
46409182--46409326	71	2.0	71	100	0	290	28	4	19	47	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46411482--46411526	24	1.9	24	86	4	65	44	13	8	33	1.75
46412623--46412881	41	6.4	41	84	0	288	36	22	19	22	1.95
46417105--46417226	39	3.1	39	91	2	192	20	22	31	25	1.98
46420339--46420372	7	4.7	7	92	3	50	47	38	0	14	1.45
46420597--46420657	14	4.4	14	76	13	63	18	0	29	52	1.45
46420588--46420683	36	2.7	34	80	9	95	16	1	29	53	1.50
46420588--46420686	35	2.8	33	77	13	83	17	1	30	51	1.52
46420631--46420709	7	11.1	7	72	16	56	18	1	36	43	1.59
46425001--46425060	27	2.3	26	82	2	66	36	20	21	21	1.95
46425793--46425948	27	5.8	26	84	8	188	25	19	19	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362