genome.fa.s8.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  205  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69218608--69218832	40	5.7	40	84	5	278	24	21	27	25	1.99
69218608--69218865	119	2.2	119	81	6	283	25	21	27	25	1.99
69226216--69226555	40	8.6	40	83	7	403	25	20	27	27	1.99
69226304--69226553	120	2.1	118	97	1	473	24	20	27	27	1.99
69226304--69226588	120	2.4	116	91	7	455	25	19	27	27	1.99
69229275--69229397	22	5.3	22	62	21	63	34	11	29	25	1.91
69229247--69229425	47	3.8	47	90	4	279	35	7	29	27	1.85
69231982--69232262	40	7.1	40	92	0	429	24	22	27	24	2.00
69235741--69235966	47	4.8	47	88	4	314	34	8	30	26	1.87
69238134--69238403	46	5.7	45	72	13	138	27	18	28	25	1.98
69241971--69242182	40	5.3	40	90	1	311	24	19	27	27	1.99
69247608--69247784	50	3.6	48	84	3	219	30	27	16	24	1.97
69252281--69252368	43	2.1	42	86	2	122	26	18	22	32	1.97
69254877--69255401	260	2.0	264	92	2	889	37	8	16	37	1.79
69257018--69257309	48	6.1	48	78	12	189	29	13	26	31	1.94
69257186--69257344	42	3.6	43	84	9	180	30	15	26	28	1.96
69261344--69261391	25	1.9	25	82	0	60	33	20	16	29	1.95
69261422--69261475	11	5.4	10	78	12	58	35	11	18	35	1.86
69261521--69261598	25	3.2	24	82	7	86	30	24	19	25	1.98
69261546--69261604	25	2.4	26	78	18	72	30	20	22	27	1.98
69261811--69261894	31	2.7	31	85	1	107	35	17	22	23	1.95
69271872--69272044	46	3.7	46	76	13	183	21	20	27	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69271869--69272039	93	1.8	93	89	2	272	21	20	28	29	1.98
69283082--69283250	39	4.3	39	90	0	257	25	18	27	27	1.98
69283082--69283321	117	2.1	116	79	6	252	24	19	27	28	1.99
69283086--69283284	78	2.6	78	85	3	222	24	19	27	28	1.99
69285161--69285708	47	11.6	47	95	0	925	29	29	8	33	1.86
69285211--69285289	25	3.3	25	66	16	76	31	29	5	34	1.79
69295576--69295797	39	5.7	39	88	1	311	24	20	26	27	1.99
69295576--69295850	78	3.5	79	83	4	328	24	20	26	29	1.99
69295576--69295850	117	2.4	117	82	6	299	24	20	26	29	1.99
69302753--69302804	27	2.0	26	84	3	68	17	26	21	34	1.95
69305918--69305962	22	2.0	22	100	0	90	33	22	8	35	1.85
69307135--69307359	40	5.7	40	85	5	278	26	27	21	24	1.99
69307135--69307359	119	1.9	120	83	8	298	26	27	21	24	1.99
69315065--69315287	40	5.7	40	82	10	253	26	27	21	24	2.00
69315065--69315287	77	2.8	79	86	5	290	26	27	21	24	2.00
69315067--69315287	117	1.9	118	84	8	299	25	27	22	24	2.00
69320702--69320741	16	2.5	17	80	12	57	22	27	37	12	1.90
69334984--69335025	3	14.3	3	92	5	68	64	0	0	35	0.94
69334982--69335020	20	2.0	20	100	0	78	61	0	0	38	0.96
69335007--69335168	81	2.0	81	92	0	270	35	17	12	33	1.89
69339383--69339463	40	2.0	40	97	0	153	39	7	12	40	1.71
69339918--69340013	39	2.5	39	89	0	138	12	25	26	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69347840--69347881	20	2.2	19	91	4	66	45	0	0	54	0.99
69347840--69347882	19	2.3	19	84	8	52	46	0	0	53	1.00
69348255--69348286	15	2.1	15	100	0	64	37	6	18	37	1.76
69348440--69348491	15	3.2	15	73	19	50	44	1	0	53	1.11
69353972--69354010	6	6.5	6	96	0	60	15	10	35	38	1.81
69355769--69355794	13	2.0	13	100	0	52	38	0	0	61	0.96
69355937--69356028	45	2.2	43	84	11	120	48	5	7	38	1.55
69356942--69356988	26	1.9	25	83	12	62	25	10	6	57	1.56
69357129--69357191	18	3.3	19	74	14	58	61	1	6	30	1.30
69358124--69358151	5	5.6	5	100	0	56	82	0	17	0	0.68
69365518--69365590	34	2.1	34	82	9	87	28	23	21	26	1.99
69371616--69371872	40	6.4	40	93	2	396	25	27	22	23	2.00
69379720--69379870	40	3.8	40	91	1	232	25	27	23	23	2.00
69383847--69383924	27	2.9	27	78	1	84	42	15	23	19	1.89
69386421--69386625	49	4.3	49	70	11	133	22	28	19	28	1.98
69386548--69386727	48	3.8	48	74	4	159	23	27	18	30	1.97
69390459--69390486	8	3.5	8	100	0	56	75	0	0	25	0.81
69390450--69390486	11	3.5	11	85	14	51	72	0	0	27	0.84
69393630--69393750	44	2.8	42	75	9	136	33	16	22	28	1.95
69399676--69399825	43	3.5	43	78	13	157	26	14	24	34	1.94
69403502--69403552	25	2.0	25	85	7	68	68	1	5	23	1.22
69406027--69406265	49	4.8	49	80	2	262	25	17	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69408076--69408124	22	2.2	20	77	19	53	51	26	4	18	1.64
69408829--69408992	43	3.8	43	76	8	147	33	23	14	29	1.93
69421711--69421738	4	7.0	4	100	0	56	25	0	25	50	1.50
69436876--69436922	24	2.0	24	91	0	76	17	23	19	40	1.91
69436900--69437081	43	4.3	43	80	4	215	27	30	18	24	1.98
69437093--69437148	22	2.6	20	76	15	58	35	1	1	60	1.17
69441549--69441807	7	36.3	7	74	10	96	46	31	1	20	1.58
69441559--69441689	57	2.3	58	83	10	162	45	34	0	19	1.51
69441555--69441676	64	1.9	64	86	6	176	45	34	0	19	1.51
69441651--69441695	22	2.0	22	91	0	72	37	42	0	20	1.52
69441550--69441746	22	9.2	22	71	10	70	46	33	0	19	1.50
69442132--69442181	25	2.0	25	96	0	91	30	12	18	40	1.86
69444586--69444756	93	1.8	93	92	0	288	28	29	21	21	1.98
69444577--69444752	46	3.8	46	78	12	189	30	28	20	20	1.98
69447484--69447550	15	4.6	14	70	17	55	58	14	16	10	1.63
69450528--69450697	46	3.7	46	77	13	195	28	29	21	20	1.98
69450535--69450707	93	1.9	93	91	2	285	27	29	22	20	1.99
69453426--69453494	15	4.7	15	77	8	70	57	17	14	10	1.63
69453426--69453494	30	2.3	30	82	7	88	57	17	14	10	1.63
69456446--69456618	46	3.8	46	76	15	178	27	28	21	21	1.99
69456453--69456623	91	1.9	93	91	4	285	26	29	22	21	1.99
69459549--69459649	43	2.3	44	84	3	125	37	25	11	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69461870--69461939	21	3.2	21	64	18	52	21	12	27	38	1.90
69461862--69461952	45	2.0	45	86	0	128	24	14	25	36	1.93
69468392--69468461	21	3.2	21	68	18	61	21	12	25	40	1.89
69468384--69468473	45	2.0	44	91	2	144	25	13	23	37	1.91
69470943--69471024	40	2.0	40	86	9	112	15	41	21	20	1.90
69476888--69477143	55	4.8	54	80	10	264	35	17	25	21	1.95
69476896--69477096	108	1.8	110	88	4	309	34	16	25	23	1.96
69477335--69477365	16	1.9	16	93	0	53	41	0	22	35	1.54
69484457--69484711	55	4.8	54	80	9	278	36	17	25	21	1.95
69484464--69484664	108	1.8	110	90	4	327	34	17	25	22	1.96
69484903--69484933	16	1.9	16	93	0	53	41	0	22	35	1.54
69489332--69489441	23	4.8	22	77	13	91	27	20	16	35	1.94
69490480--69490617	65	2.1	65	97	0	258	18	21	31	28	1.97
69494641--69495214	27	21.7	27	78	8	558	39	20	9	30	1.85
69495200--69495634	27	16.1	27	87	2	536	35	18	19	26	1.95
69495144--69495635	27	18.3	25	81	10	312	35	18	18	26	1.94
69495858--69495937	27	3.0	26	88	3	106	20	22	21	36	1.95
69515321--69515421	29	3.5	29	87	1	141	27	14	28	28	1.96
69523105--69523205	29	3.5	29	89	1	150	26	14	28	29	1.95
69544030--69544075	23	2.0	23	83	8	58	67	15	4	13	1.38
69550751--69550813	27	2.3	27	94	5	110	39	19	17	23	1.92
69550540--69551103	278	2.0	278	97	0	1060	23	20	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69551028--69551173	27	5.4	26	87	6	193	34	19	22	23	1.96
69551907--69551966	27	2.3	26	85	2	75	21	23	20	35	1.96
69560853--69560938	43	2.0	43	82	8	104	29	29	16	25	1.97
69562814--69562968	28	5.6	28	73	9	129	30	15	28	25	1.96
69562820--69562975	54	2.8	55	81	4	190	31	16	27	25	1.96
69562898--69562993	28	3.4	28	80	5	104	28	20	27	23	1.99
69562815--69562993	56	3.2	55	79	7	211	30	17	27	25	1.97
69567111--69567317	67	3.1	64	74	15	181	31	17	28	22	1.96
69567613--69567763	28	5.5	27	73	12	128	29	15	29	25	1.96
69567619--69567774	54	2.8	55	84	4	208	30	15	28	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362