genome.fa.s8.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  145  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48312485--48312546	33	1.9	32	83	3	79	19	6	4	69	1.29
48314191--48314243	25	2.2	24	82	3	61	16	22	18	41	1.90
48321393--48321563	93	1.8	93	96	0	315	28	28	21	21	1.99
48321385--48321560	46	3.8	46	79	12	216	28	28	21	21	1.98
48321984--48322043	30	2.0	30	90	0	93	30	25	8	36	1.85
48327189--48327359	93	1.8	93	94	0	306	29	28	20	22	1.98
48327181--48327356	46	3.8	46	76	12	207	30	27	19	22	1.98
48327779--48327838	30	2.0	30	90	0	93	30	25	8	36	1.85
48330447--48330526	41	2.0	41	82	9	101	26	25	35	13	1.93
48339934--48340110	27	6.6	27	85	5	205	29	28	14	26	1.95
48339934--48340110	81	2.2	81	84	2	230	29	28	14	26	1.95
48347808--48347983	54	3.3	54	83	3	212	28	28	15	27	1.96
48347808--48347982	27	6.5	27	85	1	181	29	28	15	26	1.96
48350423--48350476	29	1.9	29	85	7	76	29	25	7	37	1.83
48357338--48357561	104	2.2	104	93	1	378	31	31	19	17	1.95
48357890--48357953	30	2.2	29	81	10	76	29	28	6	35	1.82
48357897--48357953	30	1.9	30	85	3	80	29	24	7	38	1.82
48364807--48364858	26	2.0	26	92	0	86	28	34	21	15	1.94
48364819--48364969	72	2.1	71	91	2	241	30	29	16	23	1.96
48364982--48365030	25	2.0	25	95	0	89	30	32	24	12	1.92
48364888--48365107	102	2.1	103	91	3	354	31	31	19	17	1.95
48365438--48365501	30	2.2	29	81	10	76	29	28	6	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48365445--48365501	30	1.9	30	85	3	80	29	24	7	38	1.82
48366802--48366972	93	1.8	93	89	2	272	29	28	19	22	1.98
48366802--48366966	46	3.6	45	74	14	165	30	27	19	22	1.98
48384983--48385184	40	5.1	40	91	3	302	21	24	29	24	1.99
48387911--48387972	26	2.3	27	91	2	99	32	19	22	25	1.97
48388246--48388342	34	2.9	34	93	1	160	27	19	23	28	1.98
48389648--48389724	26	2.9	27	86	11	122	32	19	20	27	1.97
48392579--48392657	37	2.1	37	88	4	115	25	30	18	25	1.98
48392776--48393356	47	12.4	47	94	0	1004	29	29	8	32	1.87
48401078--48401150	24	3.0	24	85	0	101	24	10	30	34	1.90
48408558--48408587	15	2.0	15	93	0	51	30	0	16	53	1.44
48409029--48409087	24	2.5	24	88	0	82	28	11	27	32	1.92
48409042--48409100	24	2.5	24	86	5	84	27	6	28	37	1.82
48415714--48415853	57	2.4	58	83	8	180	30	24	16	28	1.96
48425802--48425861	17	3.6	17	71	8	52	5	18	3	73	1.16
48425819--48425918	20	4.7	20	70	20	60	4	17	4	75	1.12
48431034--48431122	30	3.0	31	78	4	94	29	24	16	29	1.97
48437990--48438034	23	2.0	23	86	0	63	40	0	0	60	0.97
48437989--48438034	8	5.9	8	87	5	58	39	0	0	60	0.97
48437989--48438034	15	2.9	16	83	6	58	39	0	0	60	0.97
48438471--48438522	21	2.5	20	75	9	50	44	28	1	25	1.65
48439176--48439208	15	2.2	15	89	10	50	0	24	15	60	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48445234--48445277	22	2.0	22	95	0	79	38	4	22	34	1.75
48445505--48445591	43	2.0	43	84	0	111	26	12	22	37	1.90
48449147--48449350	27	7.6	27	86	2	248	26	15	27	29	1.96
48466996--48467031	18	2.0	18	100	0	72	44	33	5	16	1.71
48477763--48477882	56	2.1	56	98	0	231	45	9	23	22	1.81
48478849--48479070	40	5.6	40	82	5	245	25	19	27	27	1.99
48485503--48485621	55	2.1	56	98	1	231	44	9	23	22	1.81
48486585--48486809	40	5.7	40	82	7	235	24	22	27	25	2.00
48486624--48486842	80	2.8	79	82	6	230	26	21	26	25	1.99
48495848--48496213	50	7.7	47	77	12	211	24	29	19	26	1.99
48495953--48496074	50	2.4	50	94	0	217	22	29	19	27	1.98
48496091--48496215	48	2.7	45	79	16	130	23	28	21	27	1.99
48503602--48503854	43	5.9	43	78	9	212	27	20	27	24	1.99
48505894--48506076	84	2.2	84	90	0	294	34	16	8	40	1.78
48513133--48513317	79	2.3	81	80	8	209	25	28	22	24	1.99
48513116--48513317	40	5.1	40	79	8	216	25	27	22	25	2.00
48518073--48518561	43	11.3	43	85	1	600	27	16	24	30	1.97
48518507--48518754	56	4.4	56	85	1	327	27	13	25	33	1.93
48522753--48523243	48	10.1	48	91	2	741	37	6	25	31	1.80
48522753--48523243	98	5.1	96	90	2	741	37	6	25	31	1.80
48523390--48523496	37	2.9	37	92	1	171	22	19	30	27	1.98
48524749--48525110	40	9.1	40	90	0	508	23	20	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48525272--48525322	25	2.0	25	84	0	66	35	13	31	19	1.91
48528480--48528543	31	2.1	31	87	0	92	26	23	14	35	1.93
48528736--48528853	24	5.0	23	90	5	157	27	22	22	27	1.99
48528898--48528948	20	2.5	20	93	0	84	31	21	11	35	1.90
48531527--48532019	48	10.1	48	88	3	673	36	5	25	31	1.80
48531534--48532016	198	2.5	195	86	4	697	36	6	26	31	1.81
48532166--48532274	37	2.9	37	93	0	182	23	19	30	26	1.98
48533538--48533604	23	3.2	23	64	24	65	25	22	26	25	2.00
48533529--48533875	40	8.7	40	90	0	505	23	20	28	27	1.99
48537335--48537826	48	10.1	48	89	3	718	36	6	25	31	1.81
48537342--48537867	245	2.2	244	85	5	692	36	6	25	31	1.82
48537973--48538081	37	2.9	37	95	0	191	22	19	31	26	1.98
48551055--48551232	40	4.5	40	89	3	245	24	22	27	25	2.00
48552959--48552984	3	8.7	3	100	0	52	69	0	0	30	0.89
48554891--48554938	20	2.4	20	71	0	51	20	31	16	31	1.95
48560554--48560640	42	2.1	42	84	0	111	27	28	17	26	1.97
48560597--48560725	48	2.7	48	79	3	134	25	28	17	27	1.98
48563510--48563535	12	2.2	12	100	0	52	23	42	19	15	1.89
48565071--48565101	16	1.9	16	93	0	53	35	22	0	41	1.54
48565068--48565107	20	2.0	20	85	0	53	37	22	0	40	1.54
48565340--48565540	108	1.8	110	85	4	282	22	25	17	34	1.95
48565293--48565547	55	4.8	52	77	11	193	21	25	16	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48568216--48568490	150	1.8	149	80	9	326	32	18	12	35	1.89
48593206--48593270	31	2.1	31	100	0	130	55	9	3	32	1.47
48593751--48593872	20	6.2	20	69	9	72	21	12	2	63	1.39
48593800--48593898	40	2.5	39	78	12	112	23	11	5	60	1.50
48593972--48594019	20	2.4	20	85	0	60	18	8	4	68	1.31
48598693--48599013	46	6.8	48	70	15	197	26	18	31	23	1.97
48603704--48603921	40	5.5	40	91	4	320	22	23	28	25	1.99
48608626--48608843	40	5.5	40	90	4	311	22	23	28	25	1.99
48628550--48628874	28	11.6	28	79	3	332	23	20	19	37	1.94
48629571--48629629	30	1.9	31	86	3	84	44	3	23	28	1.70
48631581--48631637	26	2.2	26	83	3	69	28	17	17	36	1.93
48631884--48631926	12	3.4	13	81	15	54	27	0	0	72	0.85
48631884--48631926	15	2.9	14	81	18	52	27	0	0	72	0.85
48635898--48635933	18	2.1	17	89	5	54	41	13	0	44	1.44
48638173--48638283	40	2.8	40	87	0	141	31	14	18	35	1.91
48638172--48638308	40	3.4	39	83	6	123	30	13	19	35	1.91
48638855--48638914	20	3.0	20	97	0	111	26	10	20	43	1.83
48638862--48638928	20	3.3	20	89	2	71	28	13	19	38	1.89
48640776--48641138	101	3.6	103	93	3	596	30	29	20	19	1.97
48641012--48641063	26	2.0	26	96	0	95	28	34	23	13	1.92
48641465--48641528	30	2.2	29	81	10	76	29	28	6	35	1.82
48641472--48641528	30	1.9	30	85	3	80	29	24	7	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48648348--48648714	103	3.6	103	94	1	614	30	29	20	19	1.97
48648585--48648636	26	2.0	26	96	0	95	28	34	23	13	1.92
48649043--48649106	30	2.2	29	81	10	76	29	28	6	35	1.82
48649050--48649106	30	1.9	30	85	3	80	29	24	7	38	1.82
48652849--48653027	51	3.5	52	88	8	237	28	15	28	27	1.96
48657904--48657940	15	2.5	15	100	0	74	27	27	8	37	1.84
48658733--48658780	23	2.1	23	92	0	78	27	2	14	56	1.50
48659940--48660167	40	5.7	40	87	0	314	18	19	28	32	1.96
48676673--48676750	40	2.0	40	82	5	95	30	19	20	29	1.97
48686343--48686442	42	2.4	43	83	9	136	30	27	15	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362