genome.fa.s8.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  124  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40985404--40985522	29	4.2	29	78	8	129	26	14	31	26	1.95
40985408--40985520	58	2.0	57	87	1	163	26	15	32	25	1.95
40987536--40987609	37	2.0	37	100	0	148	24	27	21	27	1.99
40987605--40987729	48	2.7	45	77	16	139	22	28	20	28	1.98
40993084--40993111	13	2.2	13	100	0	56	39	28	7	25	1.82
40997858--40998004	43	3.4	42	77	9	136	24	16	24	34	1.95
40997905--40998004	42	2.3	43	83	5	132	25	18	23	34	1.96
40997940--40998022	43	1.9	43	82	4	105	25	15	22	36	1.94
41003110--41003249	37	3.8	37	96	0	253	25	32	19	22	1.97
41003419--41003778	48	7.5	48	97	0	639	30	29	7	33	1.85
41014921--41014962	15	2.8	15	88	0	66	35	0	40	23	1.55
41020784--41021143	27	13.4	27	84	2	420	33	19	22	24	1.97
41020784--41021138	107	3.3	107	85	2	471	33	19	22	24	1.97
41025658--41026129	47	10.1	47	94	0	759	32	8	29	29	1.88
41025658--41026129	187	2.5	188	92	1	777	32	8	29	29	1.88
41026248--41026326	37	2.1	37	88	4	115	25	18	30	25	1.98
41037980--41038211	47	4.9	47	94	0	383	32	12	28	26	1.92
41038416--41038565	37	4.1	37	87	2	212	22	18	29	29	1.98
41046589--41046963	27	13.8	28	82	6	348	39	21	9	30	1.85
41046589--41046963	54	6.9	54	80	4	400	39	21	9	30	1.85
41047010--41047171	27	6.0	27	89	0	234	33	19	22	24	1.97
41047009--41047170	54	3.0	54	93	0	261	33	19	22	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41047376--41047445	25	2.8	25	91	0	113	25	24	22	27	2.00
41050386--41050426	21	2.0	21	85	9	57	63	0	14	21	1.30
41052433--41052655	119	1.9	120	82	6	283	25	27	22	24	2.00
41052431--41052655	40	5.7	40	84	6	269	25	28	22	24	2.00
41059421--41059482	31	2.0	31	96	0	115	40	8	12	38	1.73
41063633--41063661	14	2.0	15	93	6	51	82	0	17	0	0.66
41064193--41064279	44	2.0	44	90	2	140	29	6	13	49	1.68
41068737--41068823	44	2.0	44	90	2	140	29	6	13	49	1.68
41076574--41076615	15	2.6	17	85	7	52	28	0	7	64	1.20
41081495--41081718	40	5.7	40	87	6	280	24	27	22	25	2.00
41081499--41081718	118	1.9	120	83	9	299	23	27	22	25	2.00
41083345--41083526	49	3.7	49	80	2	220	29	25	18	25	1.98
41083344--41083524	100	1.8	100	91	0	299	30	24	18	25	1.98
41085362--41085459	39	2.5	39	79	0	106	31	6	18	43	1.74
41091760--41091881	46	2.7	46	96	0	217	29	27	21	21	1.98
41091762--41091904	46	3.1	45	87	4	137	28	27	21	21	1.99
41093890--41093934	22	2.0	22	100	0	90	51	13	13	22	1.75
41095296--41095329	16	2.1	16	88	0	50	32	5	0	61	1.20
41098195--41098307	41	2.8	40	90	1	172	20	21	7	50	1.73
41098280--41098333	25	2.2	25	86	6	74	18	25	5	50	1.69
41098718--41098820	43	2.4	43	98	1	197	35	23	6	33	1.81
41125349--41125441	40	2.3	41	81	7	111	27	29	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41130342--41130531	47	4.0	47	91	0	290	34	11	28	25	1.90
41130367--41130485	22	5.1	22	62	28	59	31	13	30	24	1.93
41130501--41130634	48	2.7	50	90	6	220	36	6	25	31	1.82
41130784--41130892	37	2.9	37	94	0	182	22	19	32	26	1.97
41141307--41141456	67	2.2	67	81	8	171	32	17	28	21	1.96
41141331--41141514	67	2.8	64	77	8	194	29	17	29	22	1.97
41146618--41146706	40	2.2	40	82	9	103	29	28	14	28	1.95
41152282--41152313	5	6.4	5	100	0	64	40	0	0	59	0.97
41153584--41153640	15	3.9	15	88	2	89	35	0	12	52	1.39
41154025--41154084	21	2.8	22	82	10	70	15	21	26	36	1.93
41154015--41154097	21	3.9	21	73	9	60	15	20	25	38	1.92
41158071--41158236	46	3.6	46	76	18	184	21	18	28	31	1.97
41165695--41165772	39	2.0	39	94	0	138	32	21	19	26	1.97
41168922--41169383	48	9.6	48	87	6	643	30	26	6	37	1.82
41168922--41169383	98	4.8	97	88	4	640	30	26	6	37	1.82
41168922--41169383	146	3.2	146	92	4	735	30	26	6	37	1.82
41172635--41172739	28	3.7	27	76	12	95	31	30	16	21	1.95
41172766--41173180	40	10.4	40	93	0	507	27	27	20	24	1.99
41174671--41175215	48	11.4	48	94	3	949	30	27	6	36	1.81
41180815--41181090	50	5.6	48	79	8	245	24	17	27	30	1.97
41181189--41181240	27	2.0	26	81	11	61	38	1	23	36	1.66
41196133--41196357	49	4.5	49	80	7	265	24	17	27	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41196227--41196313	28	3.3	28	65	23	80	24	14	29	31	1.95
41199579--41199654	37	2.0	38	97	2	145	26	28	18	26	1.98
41199799--41199945	50	3.0	50	90	3	226	29	23	8	37	1.85
41199904--41200095	47	4.1	47	91	1	280	26	28	11	33	1.92
41199995--41200070	22	3.3	22	67	22	66	25	28	13	32	1.93
41202278--41202502	40	5.7	40	87	5	280	25	22	27	25	2.00
41208219--41208444	40	5.7	40	85	6	255	25	23	26	25	2.00
41208219--41208444	120	1.9	120	82	9	291	25	23	26	25	2.00
41208272--41208477	80	2.6	79	81	8	204	27	21	26	24	2.00
41211414--41211535	43	2.9	41	80	11	147	30	16	24	28	1.96
41216865--41217000	48	2.9	48	75	11	145	25	24	20	29	1.99
41216861--41217025	48	3.5	48	74	12	142	26	22	22	29	1.99
41220052--41220217	43	3.9	43	80	1	145	22	17	28	30	1.97
41220667--41220767	50	2.0	50	98	0	193	44	3	17	33	1.68
41227545--41227719	27	6.5	27	86	0	215	32	21	8	38	1.83
41227547--41227719	81	2.1	81	88	0	247	32	21	8	37	1.83
41227562--41227840	27	10.3	27	78	5	161	36	21	8	33	1.83
41227643--41227836	54	3.6	53	76	8	178	41	21	7	30	1.80
41227679--41227900	27	8.1	27	71	11	121	40	17	8	32	1.80
41227945--41228018	27	2.7	27	77	8	71	35	22	20	21	1.96
41228828--41228922	25	3.8	25	84	2	120	27	23	22	27	1.99
41229142--41229220	31	2.5	31	97	0	149	29	18	25	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41230357--41230414	30	1.9	30	86	6	82	18	29	31	20	1.97
41235593--41235624	13	2.5	13	100	0	64	78	0	0	21	0.76
41235720--41235773	16	3.5	16	73	16	60	50	0	5	44	1.25
41236380--41236417	20	2.0	20	89	5	60	42	2	10	44	1.52
41236759--41236910	18	8.4	18	79	1	135	37	13	13	36	1.83
41236759--41236910	36	4.2	36	81	1	153	37	13	13	36	1.83
41236759--41236910	54	2.8	54	82	2	189	37	13	13	36	1.83
41246923--41246977	6	10.8	5	88	11	53	72	7	0	20	1.07
41246935--41246967	6	5.7	6	96	3	59	69	12	0	18	1.18
41250041--41250180	50	2.8	52	85	3	178	27	26	20	25	1.99
41250044--41250184	51	2.8	50	84	4	176	28	26	20	24	1.99
41252530--41252554	11	2.3	11	100	0	50	16	8	8	68	1.38
41262541--41262572	13	2.5	13	100	0	64	37	25	18	18	1.94
41262631--41262678	24	2.0	24	95	0	87	37	27	4	31	1.76
41265277--41265396	28	4.2	28	84	5	143	25	34	14	25	1.94
41265613--41265646	16	2.1	16	88	0	50	11	23	23	41	1.87
41277734--41277778	19	2.3	20	85	7	58	24	17	13	44	1.85
41280665--41280723	14	4.2	14	72	20	52	20	3	1	74	1.05
41280741--41280774	18	1.9	17	94	5	59	26	11	2	58	1.47
41282400--41282460	12	5.2	12	86	7	74	18	0	11	70	1.16
41282400--41282460	18	3.5	18	85	10	74	18	0	11	70	1.16
41290278--41290368	39	2.3	39	92	1	146	58	5	13	23	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41296659--41296690	15	2.0	17	88	11	50	25	0	31	43	1.55
41303849--41303927	36	2.2	36	95	2	140	49	15	5	30	1.66
41304454--41304490	19	1.9	19	94	0	65	45	2	16	35	1.61
41306786--41306837	22	2.4	22	80	6	70	13	26	17	42	1.86
41307435--41307492	29	2.0	29	100	0	116	44	17	10	27	1.81
41308018--41308069	23	2.3	23	93	0	95	32	7	11	48	1.68
41314606--41314777	63	2.7	63	80	0	193	27	7	30	34	1.85
41317581--41317631	25	2.0	25	84	0	66	39	7	11	41	1.71
41318956--41319010	28	2.0	28	85	0	74	52	5	14	27	1.63
41318977--41319033	21	2.8	19	86	10	69	50	5	17	26	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362