genome.fa.s8.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  98  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31688390--31688443	24	2.2	24	83	0	72	35	3	40	20	1.70
31689864--31689974	27	4.1	27	83	1	125	15	25	22	36	1.93
31706728--31706806	18	4.4	18	80	16	76	7	25	2	64	1.33
31716290--31716461	93	1.8	93	96	0	317	27	29	21	20	1.98
31716283--31716458	46	3.8	46	79	12	216	28	29	21	20	1.98
31728298--31728337	19	2.1	19	85	0	53	50	12	10	27	1.72
31728317--31728397	35	2.3	35	91	0	126	41	13	8	35	1.75
31730402--31730441	15	2.7	15	85	11	55	5	15	2	77	1.04
31730417--31730497	36	2.3	35	80	6	83	9	20	2	66	1.32
31732260--31732321	23	2.7	22	78	7	61	33	19	11	35	1.87
31738320--31738580	46	5.6	46	72	16	173	26	18	28	25	1.98
31738322--31738588	94	2.9	92	76	10	267	26	19	28	25	1.99
31740635--31740810	68	2.6	68	79	12	175	33	15	28	21	1.95
31748901--31749078	40	4.5	40	88	2	243	26	28	21	23	1.99
31752823--31752996	46	3.8	46	77	10	183	22	18	28	30	1.98
31752818--31752988	93	1.8	93	91	0	279	22	19	28	29	1.98
31759319--31759352	17	2.0	17	100	0	68	41	5	5	47	1.52
31764041--31764228	40	4.7	40	90	2	245	22	28	25	24	1.99
31768872--31768905	15	2.3	15	89	0	50	11	11	17	58	1.62
31769568--31769596	15	2.0	15	93	6	51	10	13	20	55	1.68
31775641--31775709	31	2.2	31	89	0	102	30	26	7	36	1.83
31778969--31779113	40	3.6	40	82	4	166	24	25	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31782031--31782070	20	2.0	21	90	5	64	7	22	2	67	1.28
31787225--31787449	40	5.7	40	82	6	233	25	28	21	25	1.99
31787381--31787458	40	1.9	41	82	10	97	26	28	20	24	1.99
31795125--31795349	40	5.7	40	81	6	224	25	28	21	24	1.99
31795281--31795358	40	1.9	41	82	10	97	26	28	20	24	1.99
31798421--31798571	27	5.6	26	74	11	108	39	23	8	28	1.84
31798442--31798575	27	5.0	26	77	10	135	38	22	8	29	1.85
31798446--31798698	27	9.4	27	81	5	89	37	22	6	33	1.80
31798416--31798588	81	2.2	80	78	3	186	39	23	8	28	1.83
31798415--31798698	54	5.3	54	78	5	198	36	22	6	33	1.81
31798526--31798698	81	2.1	81	81	0	211	36	22	5	35	1.77
31798567--31798787	27	8.2	27	87	2	309	31	22	4	41	1.75
31799272--31799359	6	14.3	6	74	17	74	19	18	15	46	1.84
31799272--31799353	31	2.6	32	90	5	132	19	18	15	46	1.84
31801306--31801459	27	5.8	25	74	12	119	39	22	8	29	1.83
31801298--31801473	54	3.3	53	77	7	176	40	22	7	29	1.82
31801452--31801753	27	11.2	27	91	0	388	30	23	6	39	1.81
31801990--31802041	27	2.0	26	84	3	68	17	26	21	34	1.95
31802082--31802141	27	2.3	26	85	2	75	21	23	20	35	1.96
31802260--31802332	6	11.8	6	76	11	67	17	19	16	46	1.84
31802260--31802332	31	2.4	31	90	4	112	17	19	16	46	1.84
31812726--31812833	27	4.0	26	83	5	117	37	20	24	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31814021--31814053	16	2.1	16	94	0	57	54	6	33	6	1.50
31814263--31814332	24	3.0	24	91	2	106	22	40	2	34	1.69
31825829--31825861	13	2.5	14	85	14	52	48	6	6	39	1.53
31828353--31828396	21	2.1	21	83	8	54	43	11	9	36	1.72
31831666--31831834	49	3.4	49	79	6	214	30	27	17	24	1.97
31831647--31831841	49	3.9	49	78	5	194	29	27	18	24	1.98
31831647--31831839	100	1.9	100	92	0	323	30	26	18	24	1.98
31839358--31839425	32	2.1	32	100	0	136	45	17	13	23	1.84
31852366--31852416	18	2.7	19	85	11	61	70	5	21	1	1.18
31852402--31852449	18	2.7	18	81	9	55	56	0	33	10	1.34
31858045--31858260	38	5.7	39	80	9	198	25	28	21	24	1.99
31858045--31858208	75	2.2	75	84	5	215	25	28	21	23	1.99
31859231--31859260	11	2.9	10	90	9	51	56	0	33	10	1.32
31865587--31865768	40	4.6	39	77	9	165	27	27	20	24	1.99
31865550--31865717	80	2.1	80	81	5	189	26	27	20	24	1.99
31865590--31865768	80	2.3	78	82	9	204	26	27	21	24	1.99
31868054--31868130	23	3.3	23	63	20	59	29	10	29	29	1.90
31868055--31868192	47	3.0	47	90	3	199	30	13	30	26	1.93
31868084--31868158	23	3.1	25	63	24	61	29	13	33	24	1.93
31868358--31868469	37	3.0	37	93	0	179	22	17	32	27	1.97
31872322--31872466	47	3.1	47	93	2	238	30	11	15	43	1.81
31873244--31873450	45	4.6	45	86	4	271	24	21	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31878542--31878593	27	2.0	26	84	3	68	34	21	26	17	1.95
31879191--31879244	27	2.0	27	85	3	74	35	20	22	22	1.96
31879246--31879390	27	5.4	27	88	1	184	26	20	17	35	1.95
31884967--31885295	48	6.9	48	93	0	550	34	6	27	30	1.83
31886613--31886851	47	5.1	47	89	1	345	31	10	12	45	1.77
31887629--31887762	45	3.0	45	95	0	232	25	23	23	27	2.00
31902115--31902161	24	2.0	24	100	0	94	40	17	8	34	1.79
31902181--31902267	40	2.2	40	87	2	129	47	11	12	28	1.76
31904646--31904680	17	2.0	17	88	5	52	5	31	2	60	1.35
31917336--31917511	49	3.6	49	83	3	246	26	18	27	27	1.98
31917333--31917511	99	1.8	99	93	2	315	26	18	26	27	1.98
31919819--31919911	28	3.3	28	92	0	150	22	12	36	27	1.91
31919819--31919931	56	2.0	56	82	3	138	27	13	33	25	1.93
31922102--31922271	48	3.6	48	79	9	213	24	27	19	29	1.98
31922102--31922316	94	2.3	93	88	4	308	23	26	20	29	1.99
31929155--31929230	39	1.9	39	91	0	125	38	13	27	21	1.90
31937196--31937437	48	5.0	47	73	6	189	27	20	29	22	1.98
31937196--31937438	96	2.5	96	83	1	281	27	20	29	22	1.98
31939653--31939678	13	2.0	13	100	0	52	30	0	23	46	1.53
31940770--31940889	43	2.8	43	75	6	127	25	18	25	30	1.98
31940767--31940888	42	2.9	42	75	6	129	25	18	24	31	1.97
31944982--31945219	27	8.8	27	90	0	332	29	21	7	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31945009--31945261	81	3.1	81	84	0	191	32	20	7	39	1.80
31945212--31945366	27	5.7	27	85	0	193	41	22	7	27	1.81
31945408--31945570	27	6.0	27	91	0	263	34	20	21	23	1.97
31945775--31945844	25	2.8	23	83	12	77	24	27	22	25	2.00
31945992--31946083	42	2.2	42	98	0	175	31	15	20	32	1.94
31946107--31946221	31	3.7	31	89	1	178	30	16	24	28	1.96
31955370--31955551	46	3.8	46	78	14	188	21	19	29	29	1.98
31957364--31957389	13	2.0	13	100	0	52	30	0	23	46	1.53
31980525--31980562	19	2.0	20	85	15	53	39	23	0	36	1.55
31980791--31980956	46	3.6	45	78	11	185	28	28	19	22	1.98
31980792--31980960	92	1.8	92	92	2	286	28	28	20	22	1.98
31994054--31994112	30	2.0	30	82	0	73	38	8	27	25	1.84
31994727--31995262	50	10.7	50	73	10	385	27	17	24	30	1.97
31994874--31995264	101	3.9	97	76	10	385	27	16	24	31	1.96
31994727--31995264	151	3.6	151	94	0	907	27	17	24	30	1.97
31995473--31995504	16	2.0	16	100	0	64	43	0	18	37	1.51
31995806--31996156	180	2.0	180	83	3	456	37	8	20	33	1.83
31996606--31996853	126	2.0	126	97	0	469	31	8	25	34	1.86
32004813--32004943	49	2.7	49	92	0	208	29	27	18	25	1.98
32005246--32005385	60	2.3	60	83	8	169	27	23	19	30	1.98
32016800--32016829	12	2.4	13	94	5	53	30	6	0	63	1.20
32017651--32017712	31	2.0	32	93	3	108	59	11	20	8	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32021709--32021772	27	2.4	27	86	0	83	18	25	18	37	1.94
32023590--32023685	38	2.5	37	85	5	129	37	3	10	48	1.53
32037833--32037890	30	1.9	30	96	0	107	55	12	29	3	1.53
32040313--32040369	26	2.2	26	100	0	114	24	17	28	29	1.97
32040910--32040939	11	2.7	11	89	0	51	66	0	0	33	0.92
32045427--32045485	23	2.5	23	77	2	64	22	11	16	49	1.78
32047486--32047743	27	9.6	27	84	3	304	24	18	20	36	1.95
32047748--32048306	27	20.8	27	81	3	437	37	7	22	31	1.83
32047748--32048310	81	7.0	81	78	4	483	37	7	22	31	1.83
32047898--32047958	26	2.3	27	82	2	70	36	11	13	39	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362