genome.fa.s8.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  123  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40638148--40638451	141	2.1	141	80	4	360	27	28	9	33	1.88
40644208--40644279	35	2.1	35	100	0	144	22	9	19	48	1.77
40647590--40647624	18	2.0	18	88	5	54	54	28	0	17	1.43
40649569--40649636	28	2.4	28	90	4	102	27	11	26	33	1.91
40653712--40653870	48	3.3	48	88	1	237	28	18	25	27	1.98
40663734--40663922	89	2.1	89	95	0	335	28	12	22	37	1.90
40663975--40664263	48	6.0	48	75	10	232	27	19	25	26	1.99
40668735--40668779	21	2.1	21	84	8	56	28	17	4	48	1.66
40670311--40670410	46	2.2	45	82	10	116	30	30	11	29	1.91
40681503--40681626	46	2.7	46	82	7	144	25	26	16	31	1.97
40682969--40683321	27	13.1	27	83	1	413	24	19	20	35	1.96
40684868--40684932	28	2.3	28	89	0	103	40	9	21	29	1.84
40685005--40685123	39	3.1	39	81	4	161	18	21	29	30	1.97
40685005--40685219	78	2.8	76	81	7	218	20	22	28	29	1.98
40685090--40685265	39	4.5	40	88	3	225	22	25	26	26	2.00
40690972--40691295	27	12.0	27	87	0	443	24	20	20	34	1.96
40693245--40693427	79	2.3	80	83	7	221	25	27	22	24	2.00
40693243--40693427	40	4.7	40	82	7	225	25	27	22	23	2.00
40699938--40699995	24	2.3	26	80	16	68	55	3	34	6	1.44
40703636--40703682	22	2.2	22	85	11	62	14	6	25	53	1.65
40706445--40706508	26	2.5	26	89	0	101	34	29	15	20	1.94
40712728--40712811	27	3.1	26	81	6	96	38	26	11	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40713215--40713319	42	2.5	42	80	1	129	20	32	25	20	1.98
40714840--40714969	46	2.8	48	76	13	146	30	27	19	22	1.98
40718015--40718077	13	4.9	13	86	1	92	30	7	26	34	1.85
40728686--40728943	40	6.5	40	90	4	364	25	28	22	22	1.99
40732573--40732623	15	3.3	15	70	20	50	52	13	7	25	1.67
40732562--40732626	32	2.0	32	100	0	130	50	15	9	24	1.73
40732562--40732613	17	3.2	17	69	20	56	50	19	7	23	1.73
40735407--40735585	50	3.7	48	82	5	182	24	30	20	25	1.99
40735552--40735678	46	2.8	46	85	9	163	25	29	18	26	1.98
40736544--40736633	45	2.0	45	97	0	171	27	24	16	31	1.97
40743231--40743434	26	7.7	27	80	2	218	33	21	17	27	1.96
40743231--40743429	53	3.8	53	86	2	274	33	21	17	27	1.95
40745639--40745900	40	6.6	40	89	4	363	23	21	27	27	1.99
40753743--40754003	40	6.6	40	94	3	406	22	22	27	26	1.99
40753743--40754010	118	2.2	120	90	5	411	23	22	28	26	1.99
40756710--40756978	46	5.8	48	81	11	267	23	30	17	28	1.97
40756757--40756977	94	2.4	92	84	9	263	22	30	18	28	1.97
40763604--40763704	47	2.1	47	87	3	141	51	2	19	25	1.61
40779581--40779718	27	5.1	27	80	11	167	33	22	25	18	1.97
40779587--40779721	54	2.5	54	91	1	218	32	22	25	18	1.97
40793460--40793485	12	2.2	12	100	0	52	34	42	7	15	1.75
40793562--40793608	19	2.3	20	82	10	60	36	0	14	48	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40793960--40794327	50	7.3	50	79	2	315	25	15	26	32	1.96
40796668--40797180	47	10.7	47	94	3	873	31	8	29	30	1.88
40796668--40797180	194	2.7	188	95	3	882	31	8	29	30	1.88
40797298--40797374	37	2.1	37	92	0	127	24	18	32	24	1.97
40824069--40824393	144	2.3	141	87	3	456	28	31	15	25	1.96
40824076--40824396	48	6.8	48	88	3	411	27	30	15	25	1.96
40826027--40826072	24	1.9	24	81	0	56	45	6	36	10	1.65
40829750--40830037	47	6.1	47	92	1	459	31	9	30	28	1.88
40829750--40830037	96	3.0	94	91	2	459	31	9	30	28	1.88
40829750--40830037	143	2.0	141	91	1	468	31	9	30	28	1.88
40830155--40830233	37	2.1	37	86	9	108	25	20	30	24	1.98
40831725--40831762	19	2.0	20	90	10	62	13	15	47	23	1.81
40832585--40832624	18	2.3	17	86	4	53	15	7	12	65	1.47
40834519--40834762	40	6.2	40	88	4	300	29	28	20	22	1.98
40842616--40842858	40	6.2	40	87	4	298	28	28	19	23	1.98
40842630--40842858	78	2.9	80	86	3	313	27	28	20	23	1.99
40846241--40846318	40	2.0	40	89	0	120	37	1	16	44	1.56
40846478--40846536	30	2.0	30	83	6	75	50	6	10	32	1.62
40852853--40852946	48	2.0	48	95	0	170	24	17	21	37	1.94
40855035--40855131	48	2.0	48	97	0	185	31	12	27	27	1.93
40857607--40857727	42	2.8	43	79	7	131	28	26	19	25	1.98
40857607--40857765	85	1.9	85	82	5	205	27	27	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40859351--40859406	25	2.2	25	96	3	103	33	10	17	37	1.85
40859813--40860044	40	5.8	40	91	2	365	26	21	28	22	1.99
40859805--40860044	82	3.0	81	91	1	383	27	21	27	23	1.99
40863875--40863998	47	2.7	47	80	10	141	27	29	17	25	1.98
40863916--40864087	47	3.7	46	75	14	172	23	31	20	24	1.98
40863822--40864131	94	3.3	94	79	5	324	22	31	20	25	1.98
40886371--40886416	23	2.0	23	84	12	60	45	10	6	36	1.65
40886378--40886422	23	2.0	23	82	8	56	40	13	8	37	1.76
40889148--40889177	14	2.1	14	100	0	60	63	0	0	36	0.95
40890416--40890467	27	1.9	27	81	14	63	63	1	7	26	1.32
40896354--40896416	32	1.9	32	87	3	90	30	25	17	26	1.97
40902828--40902907	15	5.4	14	75	7	61	11	18	12	57	1.64
40905289--40905464	46	3.8	45	75	11	169	19	21	28	30	1.98
40905285--40905457	93	1.9	93	88	2	267	20	21	29	28	1.98
40908384--40908519	48	2.8	48	84	0	164	30	20	22	27	1.98
40914156--40914297	27	5.3	27	86	0	167	24	19	19	36	1.95
40914155--40914378	54	4.1	54	80	2	200	26	16	19	37	1.93
40914155--40914328	81	2.1	80	83	6	215	24	17	20	37	1.94
40914279--40914381	27	3.8	27	92	0	170	29	10	21	38	1.87
40914185--40914381	81	2.4	81	82	5	211	26	15	19	38	1.91
40914413--40914503	25	3.6	25	88	2	130	27	23	26	23	2.00
40914710--40914878	27	6.3	27	84	0	176	26	18	20	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40914714--40914870	81	2.0	80	83	1	197	26	19	19	35	1.95
40914709--40914932	54	4.1	54	79	4	193	27	15	20	37	1.93
40914834--40914934	27	3.7	27	94	0	175	27	6	23	41	1.80
40914845--40914959	54	2.1	54	79	3	124	30	8	23	37	1.85
40914938--40915083	27	5.4	27	95	0	265	38	10	25	26	1.87
40914938--40915102	27	6.1	27	90	0	168	37	10	23	28	1.88
40914938--40915110	81	2.1	81	90	0	229	37	10	24	27	1.88
40917533--40917623	25	3.7	24	91	5	137	26	25	25	23	2.00
40917520--40917623	50	2.1	50	84	8	133	25	25	23	25	2.00
40917830--40917971	27	5.3	27	79	0	149	26	18	18	36	1.94
40917848--40917976	54	2.4	54	84	0	177	26	17	18	37	1.92
40917829--40918002	81	2.1	81	81	6	199	25	17	19	37	1.93
40917954--40918054	27	3.7	27	87	0	148	27	9	22	39	1.86
40918019--40918226	80	2.6	81	82	1	258	36	9	22	32	1.86
40918057--40918201	27	5.4	27	89	1	220	39	8	23	28	1.85
40923404--40923515	46	2.5	45	85	5	147	23	32	20	24	1.98
40926320--40926543	40	5.6	40	87	1	281	28	25	22	23	1.99
40934798--40935021	40	5.6	40	86	1	281	29	25	20	24	1.99
40934799--40935021	80	2.8	80	88	2	315	29	25	21	24	1.99
40938513--40938580	28	2.4	29	85	9	95	29	29	13	27	1.94
40938790--40938835	23	2.0	23	82	0	56	10	23	17	47	1.79
40939877--40939930	27	2.0	27	96	0	99	20	22	5	51	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40947827--40947857	16	1.9	16	93	0	53	41	6	12	38	1.69
40947843--40947886	19	2.3	19	84	7	54	50	2	13	34	1.55
40962300--40962338	21	1.9	20	94	5	69	15	30	41	12	1.85
40964348--40964406	30	2.0	30	93	0	100	40	6	25	27	1.80
40967038--40967150	29	3.9	29	76	7	97	30	15	28	25	1.95
40967038--40967150	58	2.0	57	80	5	129	30	15	28	25	1.95
40967865--40967898	17	2.1	17	88	5	52	50	8	11	29	1.69
40980158--40980240	40	2.1	40	90	4	132	27	19	25	27	1.99
40982980--40983204	40	5.6	40	78	5	204	24	26	23	26	2.00
40982944--40983204	80	3.3	81	77	7	230	24	25	22	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362