genome.fa.s8.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  132  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43712790--43712945	82	1.9	81	86	3	224	26	16	28	28	1.97
43712786--43712966	82	2.2	81	82	2	220	27	16	28	28	1.97
43712871--43712977	27	3.9	27	81	1	79	26	15	28	28	1.96
43716738--43716789	23	2.3	22	75	21	54	9	23	1	65	1.32
43716747--43716801	12	4.6	12	73	15	51	12	23	0	63	1.29
43721465--43721619	27	5.7	27	84	8	208	27	21	9	41	1.83
43721465--43721619	81	1.9	81	93	2	267	27	21	9	41	1.83
43721598--43721792	27	7.2	27	81	7	184	40	22	8	28	1.83
43721459--43721635	54	3.3	54	79	4	178	29	21	9	39	1.85
43721460--43721635	81	2.2	81	86	2	264	29	21	9	39	1.84
43721498--43721656	81	2.0	81	80	5	178	32	21	8	37	1.84
43721598--43721792	81	2.4	79	80	9	232	40	22	8	28	1.83
43721600--43721873	54	5.0	54	77	5	223	39	21	8	30	1.83
43721639--43721856	27	8.0	27	77	8	167	40	19	8	31	1.82
43722779--43722848	25	2.8	24	89	4	95	25	25	24	24	2.00
43722779--43722861	25	3.4	24	85	8	87	28	22	24	24	1.99
43722996--43723087	42	2.2	42	98	0	175	31	15	20	32	1.94
43723111--43723194	31	2.7	31	98	1	161	27	17	27	27	1.98
43724106--43724136	16	1.9	16	93	0	53	35	22	0	41	1.54
43724103--43724142	20	2.0	20	85	0	53	37	22	0	40	1.54
43724329--43724583	55	4.8	55	80	7	253	22	25	16	35	1.95
43724374--43724576	108	1.9	110	87	4	304	24	25	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43732101--43732305	27	7.6	27	83	3	223	26	15	29	29	1.96
43732102--43732305	54	3.8	54	84	3	257	25	15	29	29	1.96
43734942--43734971	11	2.6	12	89	10	53	36	0	0	63	0.95
43740314--43740378	33	2.0	32	85	5	87	15	40	29	15	1.88
43751677--43751780	35	2.9	35	86	1	136	27	10	19	42	1.84
43756207--43756255	24	2.0	24	100	0	98	46	4	8	40	1.52
43757368--43757407	21	2.0	20	85	5	53	35	0	20	45	1.51
43761403--43761490	34	2.5	35	80	10	101	46	15	6	30	1.72
43765891--43766011	40	3.0	40	86	0	143	33	20	14	31	1.93
43767189--43767225	19	1.9	19	94	0	65	8	32	21	37	1.83
43767193--43767237	19	2.3	19	84	3	54	13	33	17	35	1.89
43768002--43768039	20	1.9	20	94	0	67	47	0	21	31	1.51
43782836--43783019	67	2.8	63	77	7	181	29	16	30	23	1.96
43786399--43786478	29	2.8	29	81	9	101	27	17	28	26	1.98
43790171--43790476	47	6.4	47	89	3	378	34	8	29	27	1.86
43797139--43797166	14	2.0	14	100	0	56	7	28	28	35	1.84
43797569--43797614	23	2.0	23	100	0	92	34	13	13	39	1.83
43802731--43802800	30	2.3	30	80	9	79	21	28	18	31	1.97
43809631--43809688	20	2.9	20	78	0	71	34	34	12	18	1.88
43812836--43812861	8	3.2	8	100	0	52	15	0	61	23	1.33
43813033--43813154	43	2.8	43	84	0	154	34	27	17	20	1.95
43813217--43813263	16	2.9	17	84	6	53	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43818002--43818054	22	2.4	22	81	9	63	22	3	0	73	0.99
43818152--43818197	14	3.5	14	77	17	53	32	0	0	67	0.91
43818152--43818181	7	4.3	7	91	0	51	30	0	0	70	0.88
43819660--43819838	41	4.4	40	78	5	164	25	18	22	32	1.97
43819698--43819829	39	3.3	39	83	5	156	22	21	21	34	1.97
43819666--43819830	80	2.0	81	83	3	208	24	19	21	34	1.96
43821640--43821716	23	3.2	23	72	13	64	38	6	2	51	1.41
43824192--43824255	32	2.0	32	96	0	119	31	1	18	48	1.58
43824888--43825056	43	3.9	43	80	9	191	27	18	21	32	1.97
43826059--43826122	29	2.2	29	97	0	119	14	20	43	21	1.87
43826236--43826314	41	1.9	41	89	0	122	17	22	31	27	1.97
43826241--43826325	41	2.1	41	86	0	116	16	24	30	28	1.96
43829335--43829359	12	2.1	12	100	0	50	44	0	8	48	1.32
43831314--43831360	16	3.2	16	72	25	50	27	0	4	68	1.08
43834872--43834947	31	2.5	31	86	0	107	26	15	11	46	1.81
43838672--43838757	43	2.0	43	97	0	163	26	23	19	30	1.98
43840384--43840444	6	10.0	6	89	3	68	45	16	16	21	1.85
43848472--43848513	14	3.0	14	92	0	75	40	0	9	50	1.35
43848471--43848512	2	21.0	2	90	0	57	42	0	7	50	1.30
43849548--43849600	6	9.7	6	78	17	53	75	7	3	13	1.15
43849554--43849604	16	3.2	16	100	0	102	76	5	5	11	1.14
43849548--43849589	22	2.0	21	90	4	66	76	7	4	11	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43851727--43851784	21	2.8	21	86	5	82	39	10	22	27	1.86
43852166--43852232	34	1.9	35	90	3	109	46	10	8	34	1.70
43853001--43853053	29	1.9	26	85	11	70	60	1	0	37	1.08
43853029--43853084	8	6.6	8	78	17	60	64	0	0	35	0.94
43853029--43853084	17	3.3	17	79	16	62	64	0	0	35	0.94
43852988--43853084	34	2.7	38	80	13	107	62	1	0	36	1.02
43853180--43853254	16	4.3	18	68	14	59	61	4	0	34	1.15
43853372--43853411	20	2.0	21	90	5	64	25	5	10	60	1.49
43854487--43854513	4	6.8	4	100	0	54	77	0	0	22	0.76
43859377--43859429	26	2.0	27	85	7	74	24	15	22	37	1.92
43860915--43861022	26	4.2	26	92	0	180	37	24	6	32	1.81
43866343--43866395	26	2.0	27	85	7	74	24	15	22	37	1.92
43867875--43868022	26	6.0	25	81	10	189	36	20	6	36	1.79
43867875--43868022	51	3.0	49	86	9	196	36	20	6	36	1.79
43867875--43868022	71	2.0	77	85	7	209	36	20	6	36	1.79
43869479--43870052	284	2.0	285	96	3	1064	32	5	20	41	1.76
43870443--43870803	45	7.9	46	76	5	227	43	16	20	19	1.88
43875200--43875718	177	2.9	177	88	1	745	27	26	16	28	1.97
43875232--43875668	44	9.9	44	68	11	203	27	27	16	29	1.97
43890047--43890230	40	4.6	40	83	6	230	25	23	26	25	2.00
43890047--43890266	80	2.8	80	85	5	279	24	23	26	25	2.00
43905164--43905208	22	2.0	22	100	0	90	22	17	8	51	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43906812--43906873	26	2.4	26	80	0	79	27	22	27	22	1.99
43910321--43910398	38	2.1	38	95	0	138	34	12	29	23	1.92
43912600--43912748	46	3.2	45	75	14	135	28	18	30	22	1.97
43913887--43913928	22	2.0	22	90	4	68	16	40	21	21	1.91
43916685--43916737	23	2.2	24	87	9	74	13	32	22	32	1.92
43916883--43916931	26	2.0	25	84	8	64	10	24	26	38	1.87
43920588--43920816	29	7.9	29	73	8	160	36	14	27	21	1.93
43920582--43920805	58	3.8	58	74	5	209	36	14	27	21	1.92
43920551--43920741	87	2.2	87	82	6	217	36	14	25	23	1.93
43920705--43920816	59	1.9	59	83	0	143	37	14	27	20	1.91
43928125--43928161	19	1.9	19	88	0	56	59	5	8	27	1.48
43930244--43930279	18	2.0	18	88	0	54	11	30	8	50	1.67
43934865--43934904	15	2.7	15	88	0	62	62	20	10	7	1.50
43934835--43934903	30	2.3	30	82	2	86	57	17	14	10	1.63
43947085--43947158	29	2.6	29	86	4	96	25	31	16	27	1.96
43953416--43953468	26	2.0	25	86	13	72	35	1	16	45	1.59
43954985--43955009	11	2.3	11	100	0	50	40	0	16	44	1.47
43974860--43974897	10	3.4	11	85	14	51	65	2	0	31	1.06
43979774--43979835	28	2.2	28	82	0	79	33	4	30	30	1.79
43993413--43993469	26	2.2	26	96	0	105	22	35	29	12	1.91
44011032--44011174	56	2.5	54	74	13	130	32	19	22	25	1.97
44014172--44014232	30	2.0	30	83	0	77	40	6	22	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44014942--44015089	64	2.2	68	78	10	160	31	18	28	21	1.97
44014965--44015150	67	2.9	64	77	8	198	28	17	30	23	1.97
44028100--44028199	40	2.4	44	83	8	127	29	27	18	26	1.98
44044810--44045123	27	11.6	27	83	4	362	27	14	27	30	1.96
44044811--44045123	109	2.9	109	93	1	522	26	15	27	30	1.96
44044811--44045123	82	3.8	81	83	2	367	26	15	27	30	1.96
44044810--44045125	136	2.3	136	84	2	402	27	14	27	30	1.95
44052881--44053194	27	11.6	27	84	4	380	27	15	27	29	1.96
44052882--44053194	109	2.9	109	95	1	540	26	15	27	30	1.96
44052882--44053194	82	3.8	81	84	2	385	26	15	27	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362