Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  110  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30527011--30527056
21
2.3
20
78
14
51
45
17
6
30
1.73
30533664--30533737
36
2.1
36
100
0
148
33
24
10
31
1.90
30536273--30536553
46
6.1
46
85
2
314
42
14
22
20
1.89
30536292--30536504
91
2.3
92
86
2
286
41
15
23
19
1.89
30536292--30536553
137
1.9
137
86
0
371
42
15
22
19
1.89
30536291--30536571
91
3.1
89
78
9
271
43
16
21
19
1.88
30539786--30539833
25
1.9
25
95
0
87
39
14
10
35
1.80
30540357--30540419
3
21.0
3
100
0
126
33
0
0
66
0.92
30542872--30542916
15
3.2
13
87
12
54
73
2
8
15
1.18
30549214--30549255
19
2.2
19
83
8
50
35
11
2
50
1.52
30550404--30550444
8
5.1
8
93
0
73
2
24
21
51
1.60
30551898--30551930
2
16.5
2
100
0
66
48
0
0
51
1.00
30551941--30551972
15
2.2
15
94
5
57
53
0
0
46
1.00
30552058--30552101
19
2.4
18
85
7
54
40
9
0
50
1.34
30554312--30554379
34
2.0
34
91
0
109
63
16
2
17
1.43
30555523--30555730
53
3.9
53
84
3
267
33
11
27
27
1.91
30557430--30557478
21
2.3
21
85
0
71
18
20
16
44
1.86
30557370--30557567
42
4.8
42
77
5
181
20
20
13
45
1.85
30557375--30557559
81
2.2
83
80
4
214
20
20
13
45
1.85
30564267--30564717
27
16.6
27
85
5
552
27
21
9
41
1.84
30564709--30564780
27
2.7
27
77
0
81
40
22
8
29
1.83
30565958--30566005
25
1.9
25
91
0
78
35
25
14
25
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30566049--30566132
20
4.2
20
95
0
150
34
11
21
32
1.90
30566053--30566127
11
7.4
11
68
17
63
36
13
20
30
1.91
30566179--30566320
24
6.0
24
89
4
200
28
22
21
26
1.99
30566178--30566321
47
3.0
47
89
4
218
29
22
21
26
1.99
30567691--30567866
21
8.3
21
78
1
154
18
18
15
47
1.83
30567690--30567866
42
4.2
42
83
1
219
18
19
15
46
1.84
30567694--30567861
85
2.0
85
89
0
255
19
18
16
46
1.84
30574460--30574507
21
2.3
22
79
17
57
47
0
31
20
1.50
30576008--30576037
13
2.2
13
94
5
51
0
20
0
80
0.72
30576002--30576038
17
2.3
16
90
9
58
0
21
0
78
0.75
30576258--30576284
5
5.4
5
100
0
54
59
0
0
40
0.98
30583612--30583664
16
3.3
16
76
10
63
35
24
5
33
1.79
30588029--30588611
293
2.0
293
98
0
1121
34
22
12
30
1.91
30592535--30592582
14
2.9
17
74
25
50
54
0
0
45
0.99
30592539--30592585
16
2.9
16
75
12
51
55
0
0
44
0.99
30598127--30598310
40
4.6
39
75
6
138
26
23
27
22
2.00
30598167--30598355
80
2.4
81
77
4
186
23
24
29
22
1.99
30606288--30606387
39
2.6
39
83
12
125
25
26
27
22
2.00
30606288--30606403
39
3.0
38
79
5
124
25
25
26
22
2.00
30609068--30609214
40
3.8
37
76
11
125
26
23
27
21
1.99
30609110--30609255
77
1.9
77
81
2
177
21
23
30
23
1.99
30617142--30617325
40
4.6
40
82
4
174
28
22
26
23
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30620687--30620731
16
2.8
16
93
0
72
24
11
0
64
1.26
30627523--30627570
17
2.8
17
75
15
53
47
0
0
52
1.00
30627515--30627571
26
2.2
27
81
12
66
49
0
0
50
1.00
30627787--30627829
2
22.0
2
95
4
79
48
0
0
51
1.00
30628438--30628537
41
2.4
41
94
0
173
24
25
24
27
2.00
30628621--30628683
22
2.9
22
76
9
58
38
28
3
30
1.73
30631034--30631114
32
2.6
30
84
7
99
34
12
8
44
1.73
30634989--30635023
11
3.1
11
87
4
52
62
28
0
8
1.24
30637922--30637985
20
3.3
20
70
12
71
28
4
14
53
1.60
30637914--30637988
37
2.0
37
100
0
150
28
5
16
50
1.66
30645101--30645229
40
3.2
40
79
10
138
23
22
27
26
1.99
30647261--30648052
95
8.4
95
85
1
917
38
13
18
29
1.89
30651915--30652044
47
2.8
47
87
0
179
31
27
16
23
1.96
30653589--30653636
21
2.3
21
100
0
96
18
25
22
33
1.97
30657050--30657113
31
2.0
32
81
6
76
34
17
1
46
1.57
30661180--30661234
28
2.0
28
88
0
83
34
30
16
18
1.93
30670647--30670771
45
2.8
45
86
0
169
38
14
24
23
1.92
30678934--30679101
75
2.2
75
87
2
230
22
9
33
34
1.87
30685586--30685644
10
5.9
10
86
9
68
66
1
8
23
1.29
30691829--30692050
124
1.8
122
82
3
284
31
11
23
32
1.91
30692008--30692149
40
3.5
40
82
1
124
27
24
26
21
1.99
30692046--30692175
40
3.3
39
78
11
147
23
24
26
24
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30696957--30697035
28
2.8
28
88
0
113
30
26
8
34
1.87
30708875--30708915
21
1.9
22
85
5
57
31
24
4
39
1.76
30709317--30709376
28
2.2
26
83
11
84
26
26
11
35
1.91
30709324--30709398
28
2.7
28
91
0
123
28
24
13
34
1.93
30723955--30723988
2
17.0
2
100
0
68
50
0
0
50
1.00
30724022--30724060
18
2.3
17
86
8
53
58
0
0
41
0.98
30734492--30734518
14
1.9
14
100
0
54
22
0
0
77
0.76
30734501--30734545
17
2.5
19
82
7
58
28
2
2
66
1.15
30736539--30736770
116
2.0
116
98
0
446
36
11
23
28
1.89
30736710--30736842
33
4.3
32
67
18
93
33
16
23
27
1.96
30737745--30737770
8
3.2
8
100
0
52
23
11
0
65
1.25
30738442--30738475
12
2.8
12
95
0
59
32
44
23
0
1.54
30740351--30740412
31
2.0
31
93
0
106
33
32
19
14
1.92
30743543--30743609
33
2.0
33
100
0
134
40
14
14
29
1.87
30745110--30745140
8
3.9
8
95
0
53
22
9
25
41
1.84
30749559--30749722
71
2.3
71
97
0
310
18
29
17
34
1.94
30749559--30749756
71
2.8
70
90
3
231
20
29
17
32
1.95
30758140--30758325
40
4.7
40
85
5
209
27
27
20
24
1.99
30763475--30763785
46
6.7
46
92
0
444
40
14
23
20
1.90
30765517--30765575
25
2.4
25
100
0
118
35
40
6
16
1.76
30766681--30766718
14
2.9
13
81
11
51
18
13
10
57
1.63
30768086--30768139
20
2.7
20
85
0
72
46
16
7
29
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30773025--30773073
26
2.0
25
88
8
73
65
8
6
20
1.41
30773556--30773602
22
2.2
21
84
3
58
36
21
8
34
1.84
30773573--30773632
17
3.2
19
83
13
79
36
16
10
36
1.82
30773814--30773946
29
4.6
29
85
2
162
33
21
6
39
1.79
30774047--30774095
23
2.1
24
84
3
64
59
26
0
14
1.36
30774077--30774109
14
2.3
15
89
5
50
57
15
0
27
1.38
30778895--30778974
40
2.0
40
97
0
151
46
12
5
36
1.64
30780970--30781025
20
2.7
20
76
15
60
53
3
3
39
1.36
30782490--30782601
55
2.0
55
92
0
188
32
10
10
46
1.73
30784287--30784343
30
1.9
30
82
13
73
47
3
0
49
1.18
30784518--30784568
13
3.9
13
76
0
57
41
17
1
39
1.61
30784768--30784827
18
3.3
18
100
0
120
51
0
0
48
1.00
30784772--30784823
7
8.3
7
76
23
62
48
0
0
51
1.00
30784774--30784824
11
4.4
11
76
13
57
49
0
0
50
1.00
30806656--30806685
15
2.0
15
93
0
51
40
13
16
30
1.87
30807371--30807432
6
10.3
6
100
0
124
64
0
17
17
1.29
30820251--30820307
30
1.9
30
88
0
87
36
19
12
31
1.89
30822012--30822053
21
2.0
21
100
0
84
28
9
28
33
1.88
30824486--30824783
40
7.5
40
90
1
431
27
28
22
22
1.99
30832601--30832895
40
7.5
40
90
4
440
26
28
23
22
1.99
30832601--30832894
117
2.5
115
90
5
428
26
28
22
22
1.99
30832601--30832895
157
1.9
158
88
3
452
26
28
23
22
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30835884--30835941
22
2.6
21
78
10
71
43
18
6
31
1.77
30839888--30839927
21
1.9
21
85
10
55
72
7
0
20
1.08
30842861--30843001
39
3.6
39
92
0
228
30
3
20
45
1.68
30846418--30846443
12
2.2
12
100
0
52
57
15
7
19
1.62
30846633--30846687
27
2.0
27
96
0
101
40
5
14
40
1.69
30848299--30848620
170
1.9
170
85
3
452
36
14
10
38
1.81
30849411--30849516
49
2.2
49
91
0
167
26
26
19
27
1.99
30853826--30853850
2
12.5
2
100
0
50
48
0
0
52
1.00
30853843--30853900
29
1.9
29
83
13
73
46
1
18
32
1.60
30857622--30857716
32
2.9
31
75
12
84
29
25
20
25
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378